ONTOLOGY REPORT - ANNOTATIONS


Term:endosomal transport
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Accession:GO:0016197 term browser browse the term
Definition:The directed movement of substances mediated by an endosome, a membrane-bounded organelle that carries materials enclosed in the lumen or located in the endosomal membrane.
Synonyms:exact_synonym: endosome localisation
 related_synonym: endosome localization;   endosome transport
 alt_id: GO:0032439


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endosomal transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca1 ATP binding cassette subfamily A member 1 JBrowse link 5 69,857,717 69,983,042 RGD:1624291
RGD:1600115
G Alms1 ALMS1, centrosome and basal body associated protein JBrowse link 4 117,371,544 117,472,310 RGD:1624291
RGD:1600115
G Als2 alsin Rho guanine nucleotide exchange factor ALS2 JBrowse link 9 65,961,361 66,034,396 RGD:1624291
RGD:1600115
G Ankfy1 ankyrin repeat and FYVE domain containing 1 JBrowse link 10 59,259,955 59,331,669 RGD:1624291
G Anxa8 annexin A8 JBrowse link 16 10,417,174 10,432,388 RGD:1624291
RGD:13792537
G Ap5b1 adaptor related protein complex 5 subunit beta 1 JBrowse link 1 220,948,318 220,952,349 RGD:1624291
RGD:13792537
RGD:1600115
G Ap5m1 adaptor related protein complex 5 subunit mu 1 JBrowse link 15 25,933,483 25,955,745 RGD:1624291
RGD:1600115
G Ap5s1 adaptor related protein complex 5 subunit sigma 1 JBrowse link 3 123,754,035 123,757,349 RGD:1624291
RGD:1600115
G Ap5z1 adaptor related protein complex 5 subunit zeta 1 JBrowse link 12 14,161,998 14,175,997 RGD:1624291
G Arhgap1 Rho GTPase activating protein 1 JBrowse link 3 80,555,196 80,576,881 RGD:1600115
RGD:1624291
G Bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 JBrowse link 7 3,342,630 3,346,238 RGD:13792537
G Bloc1s2 biogenesis of lysosomal organelles complex-1, subunit 2 JBrowse link 1 263,913,901 263,920,989 RGD:13792537
G Caly calcyon neuron-specific vesicular protein JBrowse link 1 212,537,851 212,549,040 RGD:13792537
G Clec16a C-type lectin domain containing 16A JBrowse link 10 5,002,196 5,196,914 RGD:13792537
G Coro1c coronin 1C JBrowse link 12 48,481,741 48,554,054 RGD:1600115
RGD:1624291
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit JBrowse link 6 22,296,128 22,316,894 RGD:1600115
RGD:1624291
G Ehd1 EH-domain containing 1 JBrowse link 1 221,644,867 221,667,242 RGD:1624291
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1624291
G Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 JBrowse link 1 166,991,474 166,997,045 RGD:1600115
RGD:1624291
G LOC100361543 RhoA activator C11orf59-like JBrowse link X 37,261,428 37,262,470 RGD:1600115
G Lrp2 LDL receptor related protein 2 JBrowse link 3 55,665,153 55,822,484 RGD:1641882
G Mx2 MX dynamin like GTPase 2 JBrowse link 11 38,035,306 38,066,185 RGD:1624291
G Myo5b myosin Vb JBrowse link 18 70,426,865 70,729,985 RGD:1600115
RGD:1624291
G Nsg1 neuronal vesicle trafficking associated 1 JBrowse link 14 77,380,264 77,402,007 RGD:9850091
RGD:13792537
G Nsg2 neuronal vesicle trafficking associated 2 JBrowse link 10 15,867,885 15,928,169 RGD:13792537
G Picalm phosphatidylinositol binding clathrin assembly protein JBrowse link 1 154,377,229 154,458,966 RGD:1624291
RGD:1600115
G Rab10 RAB10, member RAS oncogene family JBrowse link 6 27,668,387 27,721,120 RGD:1600115
RGD:1624291
G Rab13 RAB13, member RAS oncogene family JBrowse link 2 189,581,209 189,586,358 RGD:1624291
RGD:1600115
G Rab35 RAB35, member RAS oncogene family JBrowse link 12 46,704,274 46,718,404 RGD:1600115
RGD:1624291
G Rassf9 Ras association domain family member 9 JBrowse link 7 44,146,345 44,178,179 RGD:633607
RGD:1600115
G Snap25 synaptosome associated protein 25 JBrowse link 3 129,697,408 129,788,417 RGD:1581071
G Snx1 sorting nexin 1 JBrowse link 8 71,745,687 71,786,182 RGD:68866
G Snx18 sorting nexin 18 JBrowse link 2 45,454,782 45,480,798 RGD:1624291
RGD:1600115
G Snx27 sorting nexin family member 27 JBrowse link 2 195,738,613 195,821,608 RGD:8554502
RGD:1624291
RGD:1600115
G Snx33 sorting nexin 33 JBrowse link 8 61,584,656 61,596,055 RGD:1624291
RGD:1600115
G Snx9 sorting nexin 9 JBrowse link 1 46,780,142 46,826,250 RGD:1624291
RGD:1600115
G Tmcc1 transmembrane and coiled-coil domain family 1 JBrowse link 4 147,920,987 148,048,852 RGD:1600115
RGD:1624291
G Vps16 VPS16 core subunit of CORVET and HOPS complexes JBrowse link 3 122,947,887 122,969,543 RGD:13792537
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:2290289
RGD:1624291
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
G Was WASP actin nucleation promoting factor JBrowse link X 15,155,246 15,164,099 RGD:1624291
RGD:1600115
G Washc1 WASH complex subunit 1 JBrowse link 9 113,918,914 113,936,861 RGD:1624291
RGD:1600115
G Washc4 WASH complex subunit 4 JBrowse link 7 26,309,279 26,361,221 RGD:1624291
RGD:13792537
G Washc5 WASH complex subunit 5 JBrowse link 7 99,625,379 99,677,237 RGD:1600115
G Zfyve16 zinc finger FYVE-type containing 16 JBrowse link 2 22,060,879 22,105,822 RGD:1624291
RGD:13792537
G Zfyve9 zinc finger FYVE-type containing 9 JBrowse link 5 128,233,096 128,392,675 RGD:13792537
early endosome to Golgi transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ehd3 EH-domain containing 3 JBrowse link 6 25,076,012 25,102,457 RGD:1600115
RGD:1624291
G Lman1 lectin, mannose-binding, 1 JBrowse link 18 61,683,377 61,707,344 RGD:1624291
G Rab6a RAB6A, member RAS oncogene family JBrowse link 1 165,624,973 165,664,201 RGD:1624291
RGD:1600115
G Rbsn rabenosyn, RAB effector JBrowse link 4 124,050,559 124,080,919 RGD:1624291
RGD:1600115
G Snx1 sorting nexin 1 JBrowse link 8 71,745,687 71,786,182 RGD:1624291
RGD:13792537
G Snx2 sorting nexin 2 JBrowse link 18 48,132,386 48,173,974 RGD:13792537
G Snx8 sorting nexin 8 JBrowse link 12 16,340,917 16,389,500 RGD:1624291
RGD:1600115
G Stx5 syntaxin 5 JBrowse link 1 224,939,497 224,955,658 RGD:1624291
RGD:1600115
G Surf4 surfeit 4 JBrowse link 3 5,468,284 5,481,447 RGD:1624291
G Tmed9 transmembrane p24 trafficking protein 9 JBrowse link 17 9,560,735 9,565,249 RGD:1624291
G Trappc10 trafficking protein particle complex 10 JBrowse link 20 11,168,298 11,228,634 RGD:13792537
endocytic recycling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acap2 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 JBrowse link 11 73,078,966 73,193,496 RGD:8554201
G Arf6 ADP-ribosylation factor 6 JBrowse link 6 91,697,109 91,698,257 RGD:1624291
RGD:11554955
G Arl4c ADP ribosylation factor like GTPase 4C JBrowse link 9 95,783,651 95,787,092 RGD:1624291
G Ccdc22 coiled-coil domain containing 22 JBrowse link X 15,742,978 15,754,925 RGD:1600115
RGD:1624291
G Ccdc93 coiled-coil domain containing 93 JBrowse link 13 37,400,455 37,473,973 RGD:1600115
RGD:1624291
G Cmtm6 CKLF-like MARVEL transmembrane domain containing 6 JBrowse link 8 122,789,208 122,807,560 RGD:1600115
RGD:1624291
G Dennd1a DENN domain containing 1A JBrowse link 3 22,061,120 22,501,502 RGD:1624291
RGD:13792537
G Dennd1b DENN domain containing 1B JBrowse link 13 56,015,813 56,242,041 RGD:1624291
RGD:13792537
G Ehd1 EH-domain containing 1 JBrowse link 1 221,644,867 221,667,242 RGD:1600115
RGD:1624291
G Ehd2 EH-domain containing 2 JBrowse link 1 77,847,599 77,865,870 RGD:1624291
RGD:1600115
G Ehd3 EH-domain containing 3 JBrowse link 6 25,076,012 25,102,457 RGD:1600115
RGD:1624291
G Ehd4 EH-domain containing 4 JBrowse link 3 111,877,853 111,941,841 RGD:1624291
RGD:1600115
G Epg5 ectopic P-granules autophagy protein 5 homolog JBrowse link 18 74,299,965 74,397,115 RGD:1624291
RGD:1600115
G Eps15 epidermal growth factor receptor pathway substrate 15 JBrowse link 5 128,923,809 129,022,268 RGD:9685531
G Fcgr2b Fc fragment of IgG receptor IIb JBrowse link 13 89,329,298 89,343,916 RGD:9588617
G Gga3 golgi associated, gamma adaptin ear containing, ARF binding protein 3 JBrowse link 10 104,137,655 104,156,576 RGD:11554955
G Lmtk2 lemur tyrosine kinase 2 JBrowse link 12 12,409,876 12,546,111 RGD:1624291
RGD:1600115
G LOC100911994 coiled-coil domain-containing protein 132-like JBrowse link 4 31,332,759 31,352,476 RGD:1600115
G Micall2 MICAL-like 2 JBrowse link 12 16,988,013 17,016,794 RGD:1600115
RGD:1624291
G Ptpn23 protein tyrosine phosphatase, non-receptor type 23 JBrowse link 8 118,628,777 118,651,238 RGD:1624291
RGD:1600115
G Rab11fip3 RAB11 family interacting protein 3 JBrowse link 10 15,348,356 15,433,384 RGD:1624291
G Rab11fip4 RAB11 family interacting protein 4 JBrowse link 10 66,942,363 67,051,672 RGD:13792537
G Rab13 RAB13, member RAS oncogene family JBrowse link 2 189,581,209 189,586,358 RGD:1624291
RGD:1600115
G Rab14 RAB14, member RAS oncogene family JBrowse link 3 14,373,270 14,395,357 RGD:1600115
RGD:1624291
G Rab17 RAB17, member RAS oncogene family JBrowse link 9 98,118,907 98,131,883 RGD:1624291
RGD:13792537
G Rab35 RAB35, member RAS oncogene family JBrowse link 12 46,704,274 46,718,404 RGD:13792537
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:1624291
G Slc18a2 solute carrier family 18 member A2 JBrowse link 1 280,397,831 280,457,968 RGD:5130935
G Snf8 SNF8 subunit of ESCRT-II JBrowse link 10 83,856,331 83,868,621 RGD:1624291
RGD:1600115
G Snx17 sorting nexin 17 JBrowse link 6 26,541,137 26,546,650 RGD:1600115
RGD:1624291
G Snx4 sorting nexin 4 JBrowse link 11 70,693,381 70,753,620 RGD:1624291
RGD:1600115
G Stx6 syntaxin 6 JBrowse link 13 72,804,218 72,850,757 RGD:1624291
RGD:1600115
G Vps26c VPS26 endosomal protein sorting factor C JBrowse link 11 34,764,053 34,792,446 RGD:1600115
RGD:1624291
G Vps29 VPS29 retromer complex component JBrowse link 12 39,690,069 39,699,114 RGD:1624291
RGD:1600115
G Vps35l VPS35 endosomal protein sorting factor like JBrowse link 1 188,448,517 188,552,268 RGD:1624291
RGD:1600115
G Vps50 VPS50 subunit of EARP/GARPII complex JBrowse link 4 28,441,255 28,551,784 RGD:1624291
RGD:1600115
G Vps51 VPS51 subunit of GARP complex RGD:1624291
G Vps52 VPS52 subunit of GARP complex JBrowse link 20 5,431,997 5,441,736 RGD:1624291
RGD:13792537
RGD:1600115
G Vps53 VPS53 subunit of GARP complex JBrowse link 10 64,218,596 64,341,064 RGD:1624291
RGD:1600115
endosome to lysosome transport via multivesicular body sorting pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lyst lysosomal trafficking regulator JBrowse link 17 90,323,055 90,522,091 RGD:1624291
G Ubxn6 UBX domain protein 6 JBrowse link 9 10,995,516 11,000,643 RGD:1624291
RGD:1600115
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
RGD:1600115
G Vps4b vacuolar protein sorting 4 homolog B JBrowse link 13 26,825,261 26,850,460 RGD:1624291
RGD:1600115
endosome to plasma membrane protein transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snx27 sorting nexin family member 27 JBrowse link 2 195,738,613 195,821,608 RGD:13508597
G Trarg1 trafficking regulator of GLUT4 (SLC2A4) 1 JBrowse link 10 63,471,330 63,491,713 RGD:1600115
RGD:1624291
G Washc1 WASH complex subunit 1 JBrowse link 9 113,918,914 113,936,861 RGD:1624291
RGD:1600115
endosome transport via multivesicular body sorting pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp1a charged multivesicular body protein 1A JBrowse link 19 56,001,724 56,010,004 RGD:13792537
G Chmp2a charged multivesicular body protein 2A JBrowse link 1 65,540,808 65,543,708 RGD:13792537
G Chmp2b charged multivesicular body protein 2B JBrowse link 11 2,666,405 2,692,213 RGD:13792537
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:13792537
G Laptm4b lysosomal protein transmembrane 4 beta JBrowse link 7 72,924,911 72,968,099 RGD:1624291
RGD:1600115
G RGD1566265 similar to RIKEN cDNA 2610002M06 JBrowse link X 78,870,964 78,911,601 RGD:13792537
G Rilp Rab interacting lysosomal protein JBrowse link 10 63,658,451 63,662,428 RGD:1624291
RGD:1600115
G Sort1 sortilin 1 JBrowse link 2 211,078,092 211,156,312 RGD:1624291
RGD:1600115
G Vps36 vacuolar protein sorting 36 homolog JBrowse link 16 74,719,642 74,743,921 RGD:1600115
G Vps37a VPS37A subunit of ESCRT-I JBrowse link 16 54,860,811 54,899,410 RGD:1600115
G Vps37b VPS37B subunit of ESCRT-I JBrowse link 12 37,984,790 38,023,369 RGD:1600115
G Vps37c VPS37C subunit of ESCRT-I JBrowse link 1 226,742,267 226,774,109 RGD:1600115
G Vps37d VPS37D subunit of ESCRT-I JBrowse link 12 24,651,342 24,656,793 RGD:1600115
late endosome to Golgi transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcc2 GRIP and coiled-coil domain containing 2 JBrowse link 20 27,832,960 27,879,764 RGD:1600115
RGD:13792537
RGD:1624291
G Rab7b Rab7b, member RAS oncogene family JBrowse link 13 48,456,143 48,483,714 RGD:1624291
RGD:1600115
G Sgsm2 small G protein signaling modulator 2 JBrowse link 10 61,703,837 61,745,110 RGD:1624291
RGD:1600115
late endosome to vacuole transport via multivesicular body sorting pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Leprot leptin receptor overlapping transcript JBrowse link 5 120,498,910 120,511,011 RGD:13792537
G Leprotl1 leptin receptor overlapping transcript-like 1 JBrowse link 16 61,758,941 61,769,655 RGD:13792537
G Tmem50a transmembrane protein 50A JBrowse link 5 153,233,965 153,252,006 RGD:13792537
G Tmem50b transmembrane protein 50B JBrowse link 11 31,719,441 31,752,276 RGD:13792537
multivesicular body-lysosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:1624291
negative regulation of endocytic recycling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgap1 Rho GTPase activating protein 1 JBrowse link 3 80,555,196 80,576,881 RGD:1624291
RGD:1600115
neurotransmitter receptor transport, endosome to plasma membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Myo5b myosin Vb JBrowse link 18 70,426,865 70,729,985 RGD:11533643
G Vps35 VPS35 retromer complex component JBrowse link 19 27,464,937 27,500,636 RGD:1624291
neurotransmitter receptor transport, endosome to postsynaptic membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgap44 Rho GTPase activating protein 44 JBrowse link 10 51,501,547 51,669,546 RGD:1600115
RGD:13792537
RGD:1624291
G Erbin erbb2 interacting protein JBrowse link 2 33,880,860 33,952,806 RGD:13792537
G Grip1 glutamate receptor interacting protein 1 JBrowse link 7 64,672,723 64,854,939 RGD:1600115
RGD:1624291
G Grip2 glutamate receptor interacting protein 2 JBrowse link 4 123,585,184 123,636,040 RGD:1624291
RGD:1600115
G Gripap1 GRIP1 associated protein 1 JBrowse link X 15,523,929 15,553,702 RGD:12050105
G Lrrc7 leucine rich repeat containing 7 JBrowse link 2 264,910,594 265,300,860 RGD:13792537
G Nsg1 neuronal vesicle trafficking associated 1 JBrowse link 14 77,380,264 77,402,007 RGD:1624291
RGD:1600115
G Rab11a RAB11a, member RAS oncogene family JBrowse link 8 70,192,975 70,215,719 RGD:2306457
RGD:13792537
G Rab8a RAB8A, member RAS oncogene family JBrowse link 16 19,355,047 19,376,776 RGD:2306457
G Scrib scribble planar cell polarity protein JBrowse link 7 117,105,810 117,128,802 RGD:12050130
RGD:13792537
G Vps35 VPS35 retromer complex component JBrowse link 19 27,464,937 27,500,636 RGD:1600115
RGD:1624291
positive regulation of endocytic recycling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actn2 actinin alpha 2 JBrowse link 17 66,304,530 66,397,647 RGD:1624291
RGD:1600115
G Ehd1 EH-domain containing 1 JBrowse link 1 221,644,867 221,667,242 RGD:1624291
RGD:1600115
G Ehd2 EH-domain containing 2 JBrowse link 1 77,847,599 77,865,870 RGD:1624291
RGD:1600115
G Eipr1 EARP complex and GARP complex interacting protein 1 JBrowse link 6 48,021,771 48,135,241 RGD:1600115
RGD:1624291
G Sorl1 sortilin related receptor 1 JBrowse link 8 46,228,077 46,287,171 RGD:1624291
positive regulation of endosome to plasma membrane protein transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Commd1 copper metabolism domain containing 1 JBrowse link 14 107,664,321 107,759,974 RGD:1624291
positive regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Eipr1 EARP complex and GARP complex interacting protein 1 JBrowse link 6 48,021,771 48,135,241 RGD:1600115
RGD:1624291
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snf8 SNF8 subunit of ESCRT-II JBrowse link 10 83,856,331 83,868,621 RGD:13792537
G Vps25 vacuolar protein sorting 25 homolog JBrowse link 10 89,174,684 89,180,165 RGD:13792537
G Vps28 VPS28 subunit of ESCRT-I JBrowse link 7 117,684,339 117,688,187 RGD:1600115
RGD:13792537
G Vps36 vacuolar protein sorting 36 homolog JBrowse link 16 74,719,642 74,743,921 RGD:13792537
recycling endosome to Golgi transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gcc2 GRIP and coiled-coil domain containing 2 JBrowse link 20 27,832,960 27,879,764 RGD:1600115
RGD:13792537
RGD:1624291
G Tbc1d14 TBC1 domain family, member 14 JBrowse link 14 79,172,272 79,438,765 RGD:1600115
RGD:1624291
regulation of endocytic recycling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bves blood vessel epicardial substance JBrowse link 20 50,439,885 50,474,678 RGD:1624291
G Inpp5f inositol polyphosphate-5-phosphatase F JBrowse link 1 200,037,749 200,116,524 RGD:1624291
RGD:13792537
G Ndrg4 NDRG family member 4 JBrowse link 19 9,766,439 9,802,396 RGD:1624291
RGD:1600115
G Rab11b RAB11B, member RAS oncogene family JBrowse link 7 18,598,991 18,612,132 RGD:1624291
RGD:1600115
regulation of multivesicular body size involved in endosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Snf8 SNF8 subunit of ESCRT-II JBrowse link 10 83,856,331 83,868,621 RGD:1624291
RGD:1600115
regulation of neurotransmitter receptor transport, endosome to postsynaptic membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arhgap44 Rho GTPase activating protein 44 JBrowse link 10 51,501,547 51,669,546 RGD:1600115
RGD:1624291
G Grasp general receptor for phosphoinositides 1 associated scaffold protein JBrowse link 7 142,869,785 142,877,551 RGD:1600115
RGD:1624291
G Gripap1 GRIP1 associated protein 1 JBrowse link X 15,523,929 15,553,702 RGD:12050105
regulation of recycling endosome localization within postsynapse term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gripap1 GRIP1 associated protein 1 JBrowse link X 15,523,929 15,553,702 RGD:12050105
regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:1624291
RGD:13792537
G Rab29 RAB29, member RAS oncogene family JBrowse link 13 48,644,575 48,650,229 RGD:8553873
retrograde transport, endosome to Golgi term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankfy1 ankyrin repeat and FYVE domain containing 1 JBrowse link 10 59,259,955 59,331,669 RGD:1624291
RGD:1600115
G Ap1s1 adaptor related protein complex 1 subunit sigma 1 JBrowse link 12 22,665,128 22,676,079 RGD:1624291
RGD:1600115
G Arfrp1 ADP-ribosylation factor related protein 1 JBrowse link 3 176,857,667 176,865,105 RGD:1624291
RGD:1600115
G Arl1 ADP-ribosylation factor like GTPase 1 JBrowse link 7 29,282,411 29,293,455 RGD:1624291
RGD:1600115
G Baiap3 BAI1-associated protein 3 JBrowse link 10 14,601,133 14,613,881 RGD:1624291
RGD:1600115
G Bet1l Bet1 golgi vesicular membrane trafficking protein-like JBrowse link 1 213,602,836 213,606,507 RGD:1624291
RGD:13792537
RGD:1600115
G Cln5 CLN5, intracellular trafficking protein JBrowse link 15 93,634,815 93,644,146 RGD:1624291
G Cltc clathrin heavy chain JBrowse link 10 74,014,560 74,070,578 RGD:1624291
G Dctn1 dynactin subunit 1 JBrowse link 4 114,876,770 114,896,567 RGD:1624291
G Dennd2a DENN domain containing 2A JBrowse link 4 67,242,257 67,342,993 RGD:1624291
RGD:1600115
G Dennd5a DENN domain containing 5A JBrowse link 1 174,524,047 174,588,553 RGD:1624291
RGD:1600115
G Erc1 ELKS/RAB6-interacting/CAST family member 1 JBrowse link 4 152,087,393 152,380,023 RGD:1624291
RGD:1600115
G Evi5 ecotropic viral integration site 5 JBrowse link 14 2,892,738 3,038,237 RGD:1624291
RGD:1600115
G Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 JBrowse link 1 265,904,616 266,033,107 RGD:1624291
RGD:1600115
G Gcc2 GRIP and coiled-coil domain containing 2 JBrowse link 20 27,832,960 27,879,764 RGD:1624291
G Gga1 golgi associated, gamma adaptin ear containing, ARF binding protein 1 JBrowse link 7 120,102,596 120,119,738 RGD:1624291
RGD:1600115
G Gosr1 golgi SNAP receptor complex member 1 JBrowse link 10 63,405,526 63,442,257 RGD:1624291
RGD:1600115
G Gosr2 golgi SNAP receptor complex member 2 JBrowse link 10 91,735,772 91,756,123 RGD:13792537
G Heatr5a HEAT repeat containing 5A JBrowse link 6 72,648,654 72,750,202 RGD:13792537
G Heatr5b HEAT repeat containing 5B JBrowse link 6 1,330,314 1,410,339 RGD:13792537
G LOC100911994 coiled-coil domain-containing protein 132-like JBrowse link 4 31,332,759 31,352,476 RGD:1600115
G Magel2 MAGE family member L2 JBrowse link 1 123,015,404 123,019,945 RGD:1624291
RGD:1600115
G Pheta1 PH domain containing endocytic trafficking adaptor 1 JBrowse link 12 40,225,316 40,230,573 RGD:1624291
RGD:13792537
G Pheta2 PH domain containing endocytic trafficking adaptor 2 JBrowse link 7 123,572,153 123,578,590 RGD:1624291
RGD:13792537
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 9 71,911,744 72,005,816 RGD:1624291
RGD:1600115
G Plekhj1 pleckstrin homology domain containing J1 JBrowse link 7 11,784,314 11,786,476 RGD:13792537
G Pqlc1 PQ loop repeat containing 1 JBrowse link 18 76,768,466 76,805,773 RGD:13792537
G Rab29 RAB29, member RAS oncogene family JBrowse link 13 48,644,575 48,650,229 RGD:1624291
RGD:1600115
G Rab6a RAB6A, member RAS oncogene family JBrowse link 1 165,624,973 165,664,201 RGD:13792537
G Rab6b RAB6B, member RAS oncogene family JBrowse link 8 111,600,375 111,668,817 RGD:13792537
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:1624291
G Rab9a RAB9A, member RAS oncogene family JBrowse link X 29,525,256 29,547,295 RGD:13792537
G Rab9b RAB9B, member RAS oncogene family JBrowse link X 107,531,404 107,542,510 RGD:13792537
G Rgp1 RGP1 homolog, RAB6A GEF complex partner 1 JBrowse link 5 59,080,290 59,088,777 RGD:1624291
RGD:13792537
G Rhobtb3 Rho-related BTB domain containing 3 JBrowse link 2 2,627,655 2,683,305 RGD:1624291
RGD:1600115
G Ric1 RIC1 homolog, RAB6A GEF complex partner 1 JBrowse link 1 247,688,778 247,784,219 RGD:1624291
RGD:13792537
G Rnf126 ring finger protein 126 JBrowse link 7 12,820,796 12,828,325 RGD:1624291
RGD:1600115
G Snx1 sorting nexin 1 JBrowse link 8 71,745,687 71,786,182 RGD:1624291
RGD:1600115
G Snx2 sorting nexin 2 JBrowse link 18 48,132,386 48,173,974 RGD:1624291
G Snx5 sorting nexin 5 JBrowse link 3 138,378,032 138,397,944 RGD:1624291
RGD:1600115
G Snx6 sorting nexin 6 JBrowse link 6 75,626,927 75,670,172 RGD:1624291
G Spag9 sperm associated antigen 9 JBrowse link 10 81,693,736 81,827,562 RGD:1624291
RGD:1600115
G Stx16 syntaxin 16 JBrowse link 3 172,154,739 172,183,699 RGD:1624291
RGD:1600115
G Stx5 syntaxin 5 JBrowse link 1 224,939,497 224,955,658 RGD:1624291
G Stx6 syntaxin 6 JBrowse link 13 72,804,218 72,850,757 RGD:1624291
RGD:13792537
G Tbc1d10a TBC1 domain family, member 10a JBrowse link 14 84,417,320 84,445,034 RGD:1624291
RGD:1600115
G Tbc1d10b TBC1 domain family, member 10b JBrowse link 1 198,641,018 198,652,674 RGD:1624291
RGD:1600115
G Tbc1d10c TBC1 domain family, member 10C JBrowse link 1 219,431,094 219,439,102 RGD:1624291
RGD:1600115
G Tbc1d17 TBC1 domain family, member 17 JBrowse link 1 100,836,993 100,845,216 RGD:1624291
RGD:1600115
G Tbc1d23 TBC1 domain family, member 23 JBrowse link 11 45,401,396 45,459,841 RGD:1624291
RGD:1600115
G Tbc1d5 TBC1 domain family, member 5 JBrowse link 9 1,144,641 1,747,732 RGD:1624291
RGD:1600115
G Tmem87a transmembrane protein 87A JBrowse link 3 112,128,138 112,174,097 RGD:1624291
RGD:1600115
G Tmem87b transmembrane protein 87B JBrowse link 3 121,357,787 121,393,443 RGD:1624291
RGD:1600115
G Trim27 tripartite motif-containing 27 JBrowse link 17 45,613,863 45,626,212 RGD:1624291
RGD:1600115
G Ube2o ubiquitin-conjugating enzyme E2O JBrowse link 10 105,505,721 105,553,167 RGD:1624291
RGD:1600115
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 5 168,126,157 168,136,628 RGD:1624291
RGD:1600115
G Vps26a VPS26 retromer complex component A JBrowse link 20 32,085,465 32,115,310 RGD:1624291
RGD:13792537
RGD:1600115
G Vps26b VPS26 retromer complex component B JBrowse link 8 28,054,407 28,075,514 RGD:1624291
RGD:13792537
G Vps29 VPS29 retromer complex component JBrowse link 12 39,690,069 39,699,114 RGD:1600115
RGD:13792537
G Vps35 VPS35 retromer complex component JBrowse link 19 27,464,937 27,500,636 RGD:8553873
RGD:13792537
RGD:1624291
G Vps50 VPS50 subunit of EARP/GARPII complex JBrowse link 4 28,441,255 28,551,784 RGD:1624291
RGD:1600115
G Vps51 VPS51 subunit of GARP complex RGD:1624291
G Vps52 VPS52 subunit of GARP complex JBrowse link 20 5,431,997 5,441,736 RGD:13792537
G Vps53 VPS53 subunit of GARP complex JBrowse link 10 64,218,596 64,341,064 RGD:1624291
RGD:13792537
G Vps54 VPS54 subunit of GARP complex JBrowse link 14 106,153,407 106,207,715 RGD:1624291
RGD:13792537
RGD:1600115
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:1600115
RGD:13792537
RGD:1624291
G Vti1b vesicle transport through interaction with t-SNAREs 1B JBrowse link 6 102,340,261 102,353,612 RGD:13792537
G Washc1 WASH complex subunit 1 JBrowse link 9 113,918,914 113,936,861 RGD:1600115
RGD:1624291
G Washc2c WASH complex subunit 2C JBrowse link 4 148,139,512 148,197,363 RGD:1624291
RGD:1600115
G Ykt6 YKT6 v-SNARE homolog JBrowse link 14 86,196,018 86,207,057 RGD:1624291
RGD:1600115
retrograde transport, endosome to plasma membrane term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ankrd27 ankyrin repeat domain 27 JBrowse link 1 91,857,048 91,958,763 RGD:1624291
RGD:13792537
G Ankrd50 ankyrin repeat domain 50 JBrowse link 2 125,289,071 125,323,527 RGD:1624291
RGD:1600115
G Ccdc22 coiled-coil domain containing 22 JBrowse link X 15,742,978 15,754,925 RGD:1600115
RGD:1624291
G Ccdc93 coiled-coil domain containing 93 JBrowse link 13 37,400,455 37,473,973 RGD:1600115
RGD:1624291
G Entr1 endosome associated trafficking regulator 1 JBrowse link 3 3,827,498 3,834,219 RGD:1624291
RGD:1600115
G Micall1 MICAL-like 1 JBrowse link 7 120,343,900 120,375,151 RGD:1624291
RGD:1600115
G Rab11b RAB11B, member RAS oncogene family JBrowse link 7 18,598,991 18,612,132 RGD:1624291
RGD:1600115
G Snx17 sorting nexin 17 JBrowse link 6 26,541,137 26,546,650 RGD:13792537
RGD:1624291
RGD:1600115
G Snx27 sorting nexin family member 27 JBrowse link 2 195,738,613 195,821,608 RGD:1600115
RGD:13792537
RGD:1624291
G Snx31 sorting nexin 31 JBrowse link 7 75,308,847 75,364,264 RGD:13792537
G Vps26a VPS26 retromer complex component A JBrowse link 20 32,085,465 32,115,310 RGD:1624291
RGD:1600115
G Vps26c VPS26 endosomal protein sorting factor C JBrowse link 11 34,764,053 34,792,446 RGD:1600115
RGD:1624291
G Vps29 VPS29 retromer complex component JBrowse link 12 39,690,069 39,699,114 RGD:1600115
RGD:1624291
G Vps35 VPS35 retromer complex component JBrowse link 19 27,464,937 27,500,636 RGD:1624291
G Vps35l VPS35 endosomal protein sorting factor like JBrowse link 1 188,448,517 188,552,268 RGD:1624291
RGD:1600115
G Vps39 VPS39 subunit of HOPS complex JBrowse link 3 112,087,213 112,125,307 RGD:1624291
RGD:1600115
G Washc1 WASH complex subunit 1 JBrowse link 9 113,918,914 113,936,861 RGD:1624291
G Washc2c WASH complex subunit 2C JBrowse link 4 148,139,512 148,197,363 RGD:1624291
slow endocytic recycling term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Micall1 MICAL-like 1 JBrowse link 7 120,343,900 120,375,151 RGD:1624291
RGD:1600115
synaptic vesicle budding from endosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 JBrowse link X 32,329,883 32,376,301 RGD:1624291
G Ap3b1 adaptor related protein complex 3 subunit beta 1 JBrowse link 2 24,022,815 24,227,522 RGD:1600115
RGD:1624291
G Ap3d1 adaptor related protein complex 3 subunit delta 1 JBrowse link 7 11,838,639 11,873,992 RGD:12050120
RGD:13792537
RGD:1624291
G Btbd8 BTB domain containing 8 JBrowse link 14 3,282,422 3,351,740 RGD:1624291
synaptic vesicle recycling via endosome term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl2l1 Bcl2-like 1 JBrowse link 3 148,259,594 148,314,191 RGD:12793033
G Btbd8 BTB domain containing 8 JBrowse link 14 3,282,422 3,351,740 RGD:1600115
G Dnm1l dynamin 1-like JBrowse link 11 88,830,968 88,882,271 RGD:12793033
synaptic vesicle to endosome fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Stx12 syntaxin 12 JBrowse link 5 151,044,050 151,072,893 RGD:12050136
G Stx6 syntaxin 6 JBrowse link 13 72,804,218 72,850,757 RGD:12050136
G Vamp4 vesicle-associated membrane protein 4 JBrowse link 13 80,460,699 80,483,597 RGD:12050136
RGD:11058152
G Vti1a vesicle transport through interaction with t-SNAREs 1A JBrowse link 1 276,310,072 276,508,635 RGD:12050136
trans-Golgi network to recycling endosome transport term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rab13 RAB13, member RAS oncogene family JBrowse link 2 189,581,209 189,586,358 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17895
    localization 5951
      cellular localization 2643
        intracellular transport 1556
          endosomal transport 206
            endocytic recycling + 48
            endosome transport via multivesicular body sorting pathway + 24
            retrograde transport, endosome to Golgi + 82
            retrograde transport, endosome to plasma membrane + 32
            synaptic vesicle endosomal processing + 11
            trans-Golgi network to recycling endosome transport 1
Path 2
Term Annotations click to browse term
  biological_process 17895
    localization 5951
      establishment of localization 4561
        transport 4425
          vesicle-mediated transport 1417
            endosomal transport 206
              endocytic recycling + 48
              endosome transport via multivesicular body sorting pathway + 24
              retrograde transport, endosome to Golgi + 82
              retrograde transport, endosome to plasma membrane + 32
              synaptic vesicle endosomal processing + 11
              trans-Golgi network to recycling endosome transport 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.