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ONTOLOGY REPORT - ANNOTATIONS


Term:posttranscriptional gene silencing
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Accession:GO:0016441 term browser browse the term
Definition:The inactivation of gene expression by a posttranscriptional mechanism.
Synonyms:exact_synonym: PTGS;   post-transcriptional gene silencing;   quelling
 related_synonym: cosuppression
 xref: Wikipedia:Post_transcriptional_gene_silencing


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posttranscriptional gene silencing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034923.1 IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr12:491,007...499,601 JBrowse link
G Celf1 CUGBP, Elav-like family member 1 ISO
IMP
(PMID:30508596) RGD PMID:30508596, PMID:30508596 RGD:38501076 NCBI chr 3:79,768,900...79,844,548
Ensembl chr 3:79,823,945...79,842,082
JBrowse link
G Celf2 CUGBP, Elav-like family member 2 IMP PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chr17:75,259,269...75,660,154
Ensembl chr17:75,352,389...75,654,951
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 ISO (PMID:27157137) RGD PMID:27157137 NCBI chr 9:94,425,191...94,550,431
Ensembl chr 9:94,425,252...94,550,431
JBrowse link
G LOC103689943 meiosis arrest female protein 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:28,267...72,912
Ensembl chr10:28,243...72,912
JBrowse link
G Marf1 meiosis regulator and mRNA stability factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:908,806...953,481
Ensembl chr10:908,806...953,474
JBrowse link
G Mir33 microRNA 33 ISO (MGI:MGI:4456895|PMID:20466882) RGD PMID:20466882 MGI:MGI:4456895 NCBI chr 7:123,431,612...123,431,680
Ensembl chr 7:123,431,612...123,431,680
JBrowse link
G Mir34c microRNA 34c ISO (MGI:MGI:4439432|PMID:20212154) RGD PMID:20212154 MGI:MGI:4439432 NCBI chr 8:55,492,024...55,492,100
Ensembl chr 8:55,492,024...55,492,100
JBrowse link
G Pum1 pumilio RNA-binding family member 1 ISO (MGI:MGI:5315177|PMID:22342750), (MGI:MGI:5640939|PMID:24412312) RGD PMID:22342750, PMID:24412312 MGI:MGI:5315177, MGI:MGI:5640939 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Zar1 zygote arrest 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:37,757,579...37,764,389
Ensembl chr14:37,759,776...37,763,712
JBrowse link
conversion of ds siRNA to ss siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002945.1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 Ensembl chr 1:89,967,031...90,000,386 JBrowse link
G Ajuba ajuba LIM protein ISO (PMID:20616046) RGD PMID:20616046 NCBI chr15:33,208,210...33,218,456
Ensembl chr15:33,208,216...33,218,456
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 ISO (PMID:23172285), (PMID:24768540) RGD PMID:23172285, PMID:24768540 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 ISO
ISS
(PMID:17507929)
GO_REF:0000024
RGD
UniProt
PMID:17507929 GO_REF:0000024 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G Limd1 LIM domains containing 1 ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 8:132,553,218...132,598,826
Ensembl chr 8:132,553,218...132,598,812
JBrowse link
G Mir1 microRNA 1 ISO (MGI:MGI:3510301|PMID:15361871), (MGI:MGI:5575655|PMID:17397913) RGD PMID:15361871, PMID:17397913 MGI:MGI:3510301, MGI:MGI:5575655 NCBI chr18:2,054,933...2,055,019 JBrowse link
G Mir100 microRNA 100 ISO (MGI:MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:MGI:4822296 NCBI chr 8:45,746,948...45,747,027
Ensembl chr 8:45,746,948...45,747,027
JBrowse link
G Mir107 microRNA 107 ISO (MGI:MGI:5013695|PMID:21415270) RGD PMID:21415270 MGI:MGI:5013695 NCBI chr 1:253,128,250...253,128,336
Ensembl chr 1:253,128,250...253,128,336
JBrowse link
G Mir10a microRNA 10a ISO (MGI:MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:MGI:3510301 NCBI chr10:84,165,950...84,166,059
Ensembl chr10:84,165,950...84,166,059
JBrowse link
G Mir124-1 microRNA 124-1 ISO (MGI:MGI:3706460|PMID:17403776), (MGI:MGI:4438512|PMID:19898466), (MGI:MGI:5303045|PMID:21857657) RGD PMID:17403776, PMID:19898466, PMID:21857657 MGI:MGI:3706460, MGI:MGI:4438512, MGI:MGI:5303045 NCBI chr15:47,964,298...47,964,382
Ensembl chr15:47,964,298...47,964,382
JBrowse link
G Mir124-2 microRNA 124-2 ISO (MGI:MGI:3706460|PMID:17403776), (MGI:MGI:4438512|PMID:19898466), (MGI:MGI:5303045|PMID:21857657) RGD PMID:17403776, PMID:19898466, PMID:21857657 MGI:MGI:3706460, MGI:MGI:4438512, MGI:MGI:5303045 NCBI chr 2:102,311,603...102,311,711
Ensembl chr 2:102,311,603...102,311,711
JBrowse link
G Mir124-3 microRNA 124-3 ISO (MGI:MGI:3706460|PMID:17403776), (MGI:MGI:4438512|PMID:19898466), (MGI:MGI:5303045|PMID:21857657) RGD PMID:17403776, PMID:19898466, PMID:21857657 MGI:MGI:3706460, MGI:MGI:4438512, MGI:MGI:5303045 NCBI chr 3:176,406,205...176,406,291
Ensembl chr 3:176,406,205...176,406,291
JBrowse link
G Mir125a microRNA 125a ISO (MGI:MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:MGI:4438512 NCBI chr 1:59,704,827...59,704,911
Ensembl chr 1:59,704,827...59,704,911
JBrowse link
G Mir125b1 microRNA 125b-1 ISO (MGI:MGI:5882697|PMID:28281528) RGD PMID:28281528 MGI:MGI:5882697 NCBI chr 8:45,798,260...45,798,346
Ensembl chr 8:45,798,260...45,798,346
JBrowse link
G Mir125b2 microRNA 125b-2 ISO (MGI:MGI:5882697|PMID:28281528) RGD PMID:28281528 MGI:MGI:5882697 NCBI chr11:16,097,346...16,097,433 JBrowse link
G Mir133a1 microRNA 133a-1 ISO MGI:MGI:3822152|MGI:MGI:3822154 (MGI:MGI:3820745|PMID:19015276) RGD PMID:19015276 MGI:MGI:3820745 NCBI chr18:2,052,478...2,052,564 JBrowse link
G Mir137 microRNA 137 ISO (MGI:MGI:4822296|PMID:20439489) RGD PMID:20439489 MGI:MGI:4822296 NCBI chr 2:221,658,106...221,658,207
Ensembl chr 2:221,658,106...221,658,207
JBrowse link
G Mir155 microRNA 155 ISO (MGI:MGI:4833768|PMID:20548288) RGD PMID:20548288 MGI:MGI:4833768 NCBI chr11:24,176,603...24,176,667
Ensembl chr11:24,176,603...24,176,667
JBrowse link
G Mir17 microRNA 17 ISO MGI:MGI:3790968 (MGI:MGI:5140688|PMID:21338882) RGD PMID:21338882 MGI:MGI:5140688 NCBI chr15:100,179,879...100,179,962
Ensembl chr15:100,179,879...100,179,962
JBrowse link
G Mir183 microRNA 183 ISO (MGI:MGI:6108693|PMID:28819115) RGD PMID:28819115 MGI:MGI:6108693 NCBI chr 4:57,463,569...57,463,678
Ensembl chr 4:57,463,569...57,463,678
JBrowse link
G Mir196a microRNA 196a ISO (MGI:MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:MGI:3510301 NCBI chr 7:144,584,235...144,584,344
Ensembl chr 7:144,584,235...144,584,344
JBrowse link
G Mir196c microRNA 196c ISO (MGI:MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:MGI:3510301 NCBI chr10:84,113,578...84,113,657
Ensembl chr10:84,113,578...84,113,657
JBrowse link
G Mir1b microRNA 1b ISO (MGI:MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:MGI:3510301 NCBI chr 3:175,769,716...175,769,800
Ensembl chr 3:175,769,716...175,769,800
JBrowse link
G Mir200b microRNA 200b ISO (MGI:MGI:5013695|PMID:21415270) RGD PMID:21415270 MGI:MGI:5013695 NCBI chr 5:173,490,144...173,490,238
Ensembl chr 5:173,490,144...173,490,238
JBrowse link
G Mir205 microRNA 205 ISO (MGI:MGI:5514438|PMID:23974039) RGD PMID:23974039 MGI:MGI:5514438 NCBI chr13:112,233,283...112,233,390
Ensembl chr13:112,233,283...112,233,390
JBrowse link
G Mir21 microRNA 21 ISO (MGI:MGI:5693365|PMID:19147652), (MGI:MGI:6208917|PMID:29925839) RGD PMID:19147652, PMID:29925839 MGI:MGI:5693365, MGI:MGI:6208917 NCBI chr10:73,902,210...73,902,301
Ensembl chr10:73,902,210...73,902,301
JBrowse link
G Mir223 microRNA 223 ISO MGI:MGI:3811186 (MGI:MGI:3811177|PMID:18278031) RGD PMID:18278031 MGI:MGI:3811177 NCBI chr  X:65,367,812...65,367,921
Ensembl chr  X:65,367,812...65,367,921
JBrowse link
G Mir23a microRNA 23a ISO (MGI:MGI:5516374|PMID:24101522) RGD PMID:24101522 MGI:MGI:5516374 NCBI chr19:25,318,582...25,318,656
Ensembl chr19:25,318,582...25,318,656
JBrowse link
G Mir26a microRNA 26a ISO (MGI:MGI:5494382|PMID:22210897) RGD PMID:22210897 MGI:MGI:5494382 NCBI chr 8:127,714,441...127,714,530
Ensembl chr 8:127,714,441...127,714,530
JBrowse link
G Mir26b microRNA 26b ISO (MGI:MGI:5494382|PMID:22210897) RGD PMID:22210897 MGI:MGI:5494382 NCBI chr 9:81,675,275...81,675,359
Ensembl chr 9:81,675,275...81,675,359
JBrowse link
G Mir301a microRNA 301a ISO (MGI:MGI:5426073|PMID:22517757) RGD PMID:22517757 MGI:MGI:5426073 NCBI chr10:74,417,746...74,417,845
Ensembl chr10:74,417,746...74,417,845
JBrowse link
G Mir30a microRNA 30a ISO (MGI:MGI:3838679|PMID:19185580) RGD PMID:19185580 MGI:MGI:3838679 NCBI chr 9:29,542,635...29,542,705
Ensembl chr 9:29,542,635...29,542,705
JBrowse link
G Mir324 microRNA 324 ISO (MGI:MGI:5576401|PMID:24882011) RGD PMID:24882011 MGI:MGI:5576401 NCBI chr10:56,621,126...56,621,208
Ensembl chr10:56,621,124...56,621,212
JBrowse link
G Mir34a microRNA 34a ISO (MGI:MGI:4822296|PMID:20439489), (MGI:MGI:5613071|PMID:25043055) RGD PMID:20439489, PMID:25043055 MGI:MGI:4822296, MGI:MGI:5613071 NCBI chr 5:167,092,491...167,092,592
Ensembl chr 5:167,092,491...167,092,592
JBrowse link
G Mir3545 microRNA 3545 ISO (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr 6:136,704,947...136,705,061
Ensembl chr 6:136,704,947...136,705,061
JBrowse link
G Mir423 microRNA 423 ISO (MGI:MGI:5922106|PMID:28411267) RGD PMID:28411267 MGI:MGI:5922106 NCBI chr10:63,098,366...63,098,444
Ensembl chr10:63,098,360...63,098,453
JBrowse link
G Mir489 microRNA 489 ISO (MGI:MGI:5312165|PMID:22358842) RGD PMID:22358842 MGI:MGI:5312165 NCBI chr 4:28,659,523...28,659,628
Ensembl chr 4:28,659,523...28,659,628
JBrowse link
G Mir494 microRNA 494 ISO (MGI:MGI:5302482|PMID:20837890) RGD PMID:20837890 MGI:MGI:5302482 NCBI chr 6:133,864,370...133,864,452
Ensembl chr 6:133,864,369...133,864,453
JBrowse link
G Mir7-1 microRNA 7-1 ISO (MGI:MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:MGI:4946569 NCBI chr17:6,675,016...6,675,112
Ensembl chr17:6,675,016...6,675,112
JBrowse link
G Mir873 microRNA 873 ISO (MGI:MGI:6103206|PMID:28837808) RGD PMID:28837808 MGI:MGI:6103206 NCBI chr 5:52,481,076...52,481,152
Ensembl chr 5:52,481,076...52,481,152
JBrowse link
G Mir874 microRNA 874 ISO (MGI:MGI:5551666|PMID:24462679) RGD PMID:24462679 MGI:MGI:5551666 NCBI chr17:7,025,014...7,025,089
Ensembl chr17:7,025,014...7,025,089
JBrowse link
G Mir96 microRNA 96 ISO (MGI:MGI:6108693|PMID:28819115) RGD PMID:28819115 MGI:MGI:6108693 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471
JBrowse link
G Mirlet7a1 microRNA let-7a-1 ISO MGI:MGI:3619049 (MGI:MGI:4438512|PMID:19898466), (MGI:MGI:5461254|PMID:23152446) RGD PMID:19898466, PMID:23152446 MGI:MGI:4438512, MGI:MGI:5461254 NCBI chr17:16,417,853...16,417,946
Ensembl chr17:16,417,855...16,417,954
JBrowse link
G Mirlet7b microRNA let-7b ISO (MGI:MGI:5461254|PMID:23152446) RGD PMID:23152446 MGI:MGI:5461254 NCBI chr 7:126,590,627...126,590,711
Ensembl chr 7:126,590,627...126,590,711
JBrowse link
G Mirlet7c1 microRNA let-7c-1 ISO (MGI:MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:MGI:3510301 NCBI chr11:16,052,873...16,052,966
Ensembl chr11:16,052,868...16,052,975
JBrowse link
G Mirlet7c2 microRNA let-7c-2 ISO (MGI:MGI:3510301|PMID:15361871) RGD PMID:15361871 MGI:MGI:3510301 NCBI chr 7:126,590,212...126,590,306
Ensembl chr 7:126,590,212...126,590,306
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase ISO (PMID:17507929) RGD PMID:17507929 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A ISO
IBA
(PMID:23172285)
PMID:21873635
RGD PMID:23172285, PMID:21873635 RGD:13792537 NCBI chr 1:192,991,584...193,146,403
Ensembl chr 1:193,076,430...193,146,394
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C ISO
IBA
UniProtKB:Q8SY33 (PMID:23172285)
PMID:21873635
RGD PMID:23172285, PMID:21873635 RGD:13792537 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Wtip WT1 interacting protein ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 1:89,966,496...89,999,892 JBrowse link
miRNA loading onto RISC involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific ISO
IEA
(PMID:23622242)
GO_REF:0000107
RGD
Ensembl
PMID:23622242 GO_REF:0000107 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Ago1 argonaute RISC component 1 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IEA
ISO
GO_REF:0000107
(PMID:18178619), (PMID:19966796)
Ensembl
RGD
PMID:18178619, PMID:19966796 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:18178619) RGD PMID:18178619 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO (PMID:18178619) RGD PMID:18178619 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
miRNA mediated inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 ISS
ISO
IEA
GO_REF:0000024
(PMID:17671087), (PMID:18771919), (PMID:19801630)
GO_REF:0000104
UniProt
RGD
PMID:17671087, PMID:18771919, PMID:19801630 GO_REF:0000024, GO_REF:0000104 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 ISO (PMID:18771919) RGD PMID:18771919 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Eif6 eukaryotic translation initiation factor 6 ISO
IEA
ISS
(PMID:17507929)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17507929 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:151,356,867...151,363,201
Ensembl chr 3:151,356,868...151,363,115
JBrowse link
G Mir125a microRNA 125a ISO (MGI:MGI:5465045|PMID:22751012) RGD PMID:22751012 MGI:MGI:5465045 NCBI chr 1:59,704,827...59,704,911
Ensembl chr 1:59,704,827...59,704,911
JBrowse link
G Mir143 microRNA 143 ISO (MGI:MGI:5289772|PMID:21441927) RGD PMID:21441927 MGI:MGI:5289772 NCBI chr18:56,971,273...56,971,377
Ensembl chr18:56,971,273...56,971,377
JBrowse link
G Mir186 microRNA 186 ISO (MGI:MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:MGI:6402838 NCBI chr 2:263,873,759...263,873,844
Ensembl chr 2:263,873,759...263,873,844
JBrowse link
G Mirlet7b microRNA let-7b ISO (MGI:MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:MGI:6402838 NCBI chr 7:126,590,627...126,590,711
Ensembl chr 7:126,590,627...126,590,711
JBrowse link
G Mirlet7g microRNA let-7g ISO (MGI:MGI:6402838|PMID:32109384) RGD PMID:32109384 MGI:MGI:6402838 NCBI chr 8:114,874,457...114,874,544
Ensembl chr 8:114,874,454...114,874,550
JBrowse link
G Rbm4 RNA binding motif protein 4 ISO (PMID:19801630) RGD PMID:19801630 NCBI chr 1:220,038,403...220,049,756
Ensembl chr 1:220,039,734...220,048,966
JBrowse link
G Tnrc6a trinucleotide repeat containing adaptor 6A ISO (PMID:17671087) RGD PMID:17671087 NCBI chr 1:192,991,584...193,146,403
Ensembl chr 1:193,076,430...193,146,394
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Trim71 tripartite motif containing 71 ISO
ISS
(MGI:MGI:5448492|PMID:22735451)
GO_REF:0000024
RGD
UniProt
PMID:22735451 GO_REF:0000024, MGI:MGI:5448492 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Zfp36 zinc finger protein 36 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5487524|PMID:21278420)
Ensembl
UniProt
RGD
PMID:21278420 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5487524 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
mRNA cleavage involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 ISO
IEA
ISS
(MGI:MGI:5616320|PMID:16357216)
(PMID:15260970), (PMID:17524464), (PMID:18771919)
GO_REF:0000104
GO_REF:0000024
RGD
UniProt
PMID:15260970, PMID:16357216, PMID:17524464, PMID:18771919 GO_REF:0000024, GO_REF:0000104, MGI:MGI:5616320 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Mir196a microRNA 196a ISO (MGI:MGI:3042528|PMID:15105502), (MGI:MGI:3510301|PMID:15361871) RGD PMID:15105502, PMID:15361871 MGI:MGI:3042528, MGI:MGI:3510301 NCBI chr 7:144,584,235...144,584,344
Ensembl chr 7:144,584,235...144,584,344
JBrowse link
G Mir196b microRNA 196b ISO (MGI:MGI:3042528|PMID:15105502) RGD PMID:15105502 MGI:MGI:3042528 NCBI chr 4:82,199,056...82,199,140
Ensembl chr 4:82,199,056...82,199,140
JBrowse link
G Mir196c microRNA 196c ISO (MGI:MGI:3042528|PMID:15105502), (MGI:MGI:3510301|PMID:15361871) RGD PMID:15105502, PMID:15361871 MGI:MGI:3042528, MGI:MGI:3510301 NCBI chr10:84,113,578...84,113,657
Ensembl chr10:84,113,578...84,113,657
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase ISO (PMID:16289642) RGD PMID:16289642 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
mRNA cleavage involved in gene silencing by siRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IEA
ISO
GO_REF:0000107
(PMID:15260970), (PMID:22795694)
Ensembl
RGD
PMID:15260970, PMID:22795694 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
negative regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnd1 DND microRNA-mediated repression inhibitor 1 ISO
IBA
(PMID:18155131)
PMID:21873635
RGD PMID:18155131, PMID:21873635 RGD:13792537 NCBI chr18:29,608,588...29,611,212
Ensembl chr18:29,608,588...29,611,212
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISS
ISO
GO_REF:0000024
RNAcentral:URS000024463E_9606 (PMID:26595526), (PMID:27089893)
UniProt
RGD
PMID:26595526, PMID:27089893 GO_REF:0000024 NCBI chr12:2,461,502...2,502,432
Ensembl chr12:2,461,502...2,502,432
JBrowse link
G Pou5f1 POU class 5 homeobox 1 ISO (PMID:19409607) RGD PMID:19409607 NCBI chr20:3,747,231...3,751,994
Ensembl chr20:3,747,221...3,751,994
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO (PMID:28522568) RGD PMID:28522568 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO RNAcentral:URS000024463E_9606 (PMID:22269326) RGD PMID:22269326 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
negative regulation of pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcdin3d BCDIN3 domain containing RNA methyltransferase ISO
IBA
ISS
(PMID:23063121)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23063121, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 7:141,132,106...141,136,700
Ensembl chr 7:141,132,133...141,136,700
JBrowse link
G Lin28b lin-28 homolog B ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
negative regulation of primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Il6 interleukin 6 ISO UniProtKB:P40763 (PMID:31507089) RGD PMID:31507089 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Lin28b lin-28 homolog B ISO (PMID:18951094) RGD PMID:18951094 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:24636259 RGD:12789709 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (PMID:31507089) RGD PMID:31507089 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
negative regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esr1 estrogen receptor 1 ISO
IEA
(PMID:20388878)
GO_REF:0000107
RGD
Ensembl
PMID:20388878 GO_REF:0000107 NCBI chr 1:41,192,029...41,594,799
Ensembl chr 1:41,192,824...41,594,796
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO
IEA
(PMID:20388878)
GO_REF:0000107
RGD
Ensembl
PMID:20388878 GO_REF:0000107 NCBI chr10:48,629,121...48,772,890
Ensembl chr10:48,629,121...48,772,890
JBrowse link
G Ncor2 nuclear receptor co-repressor 2 ISO (PMID:20388878) RGD PMID:20388878 NCBI chr12:36,871,917...37,033,701
Ensembl chr12:36,871,999...37,033,701
JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha ISO (MGI:MGI:5562625|PMID:24161931) RGD PMID:24161931 MGI:MGI:5562625 NCBI chr 2:241,909,332...242,186,861
Ensembl chr 2:241,909,832...242,184,854
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO RNAcentral:URS000024463E_9606 (PMID:22269326) RGD PMID:22269326 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:31124343), (PMID:31824476) RGD PMID:31124343, PMID:31824476 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Tp53 tumor protein p53 ISO MGI:MGI:1890508 (MGI:MGI:5013521|PMID:21522133) RGD PMID:21522133 MGI:MGI:5013521 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Zc3h10 zinc finger CCCH type containing 10 ISO (PMID:28431233) RGD PMID:28431233 NCBI chr 7:2,968,428...2,972,521
Ensembl chr 7:2,968,435...2,972,521
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO
ISS
(PMID:22055188)
GO_REF:0000024
RGD
UniProt
PMID:22055188 GO_REF:0000024 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 ISO MGI:MGI:2180033|MGI:MGI:98834 (MGI:MGI:5013521|PMID:21522133) RGD PMID:21522133 MGI:MGI:5013521 NCBI chr 5:139,982,404...140,015,541
Ensembl chr 5:139,983,680...140,015,541
JBrowse link
negative regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tert telomerase reverse transcriptase ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
negative regulation of RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific ISO
IEA
(MGI:MGI:3573853|PMID:15556947)
GO_REF:0000107
RGD
Ensembl
PMID:15556947 GO_REF:0000107, MGI:MGI:3573853 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
positive regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002945.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:89,967,031...90,000,386 JBrowse link
G Ajuba ajuba LIM protein ISO
IBA
ISS
(PMID:20616046)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20616046, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:33,208,210...33,218,456
Ensembl chr15:33,208,216...33,218,456
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Fmr1 FMRP translational regulator 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:4868681|PMID:20159450)
(PMID:17057366)
Ensembl
UniProt
RGD
PMID:17057366, PMID:20159450 GO_REF:0000024, GO_REF:0000107, MGI:MGI:4868681 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Fxr1 FMR1 autosomal homolog 1 ISO
IEA
ISS
(PMID:17057366)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:17057366 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:120,529,716...120,570,356
Ensembl chr 2:120,512,899...120,570,355
JBrowse link
G Limd1 LIM domains containing 1 ISO
IBA
ISS
(PMID:20616046)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20616046, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:132,553,218...132,598,826
Ensembl chr 8:132,553,218...132,598,812
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 IMP PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chr 2:240,773,520...240,890,053
Ensembl chr 2:240,773,456...240,866,689
JBrowse link
G Pum1 pumilio RNA-binding family member 1 ISO (PMID:20818387), (PMID:22345517) RGD PMID:20818387, PMID:22345517 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Pum2 pumilio RNA-binding family member 2 ISO (PMID:22345517) RGD PMID:22345517 NCBI chr 6:33,786,184...33,865,693
Ensembl chr 6:33,786,197...33,865,687
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (PMID:23820254) RGD PMID:23820254 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Trim71 tripartite motif containing 71 ISO (MGI:MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:MGI:4438512 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Wtip WT1 interacting protein ISO (PMID:20616046) RGD PMID:20616046 NCBI chr 1:89,966,496...89,999,892 JBrowse link
G Zfp36 zinc finger protein 36 ISO
ISS
(PMID:15766526)
GO_REF:0000024
RGD
UniProt
PMID:15766526 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
positive regulation of miRNA mediated inhibition of translation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 IEA
ISO
GO_REF:0000107
(PMID:23409027)
Ensembl
RGD
PMID:23409027 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ddx6 DEAD-box helicase 6 ISO (PMID:27342281) RGD PMID:27342281 NCBI chr 8:48,924,768...48,961,394
Ensembl chr 8:48,925,604...48,958,026
JBrowse link
G Eif4e2 eukaryotic translation initiation factor 4E family member 2 ISO (PMID:28487484) RGD PMID:28487484 NCBI chr 9:94,310,476...94,325,445
Ensembl chr 9:94,307,852...94,336,831
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:24335285), (PMID:27342281), (PMID:28487484), (PMID:32354837) RGD PMID:24335285, PMID:27342281, PMID:28487484, PMID:32354837 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
G Eif4g1 eukaryotic translation initiation factor 4 gamma, 1 ISO (PMID:23409027) RGD PMID:23409027 NCBI chr11:83,907,659...83,927,683
Ensembl chr11:83,908,109...83,926,524
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO
IEA
(PMID:23820254)
GO_REF:0000107
RGD
Ensembl
PMID:23820254 GO_REF:0000107 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B ISO (PMID:32354837) RGD PMID:32354837 NCBI chr 7:121,930,610...122,147,934
Ensembl chr 7:121,930,615...122,147,934
JBrowse link
positive regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
(PMID:18548003)
Ensembl
RGD
PMID:18548003 GO_REF:0000107 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Ddx5 DEAD-box helicase 5 ISO (PMID:18548003) RGD PMID:18548003 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Egfr epidermal growth factor receptor ISO (PMID:21673316) RGD PMID:21673316 NCBI chr14:99,919,485...100,104,136
Ensembl chr14:99,919,485...100,098,796
JBrowse link
G Il6 interleukin 6 ISO (PMID:27252421) RGD PMID:27252421 NCBI chr 4:3,043,231...3,047,807
Ensembl chr 4:3,043,231...3,047,807
JBrowse link
G Lin28a lin-28 homolog A ISO (MGI:MGI:5294254|PMID:21962509) RGD PMID:21962509 MGI:MGI:5294254 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 ISO
IEA
(PMID:24375836)
GO_REF:0000107
RGD
Ensembl
PMID:24375836 GO_REF:0000107 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 ISO (PMID:24375836) RGD PMID:24375836 NCBI chr 7:11,458,971...11,478,520
Ensembl chr 7:11,458,967...11,478,489
JBrowse link
G Myocd myocardin ISO
IEA
(MGI:MGI:6414695|PMID:28342807)
GO_REF:0000107
RGD
Ensembl
PMID:28342807 GO_REF:0000107, MGI:MGI:6414695 NCBI chr10:51,682,053...51,781,458
Ensembl chr10:51,683,540...51,778,986
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 ISO MGI:MGI:2385930 (MGI:MGI:5574156|PMID:24349493) RGD PMID:24349493 MGI:MGI:5574156 NCBI chr 2:5,569,954...5,579,894
Ensembl chr 2:5,569,935...5,579,894
JBrowse link
G Ripk1 receptor interacting serine/threonine kinase 1 ISO (PMID:26020802) RGD PMID:26020802 NCBI chr17:31,537,580...31,569,904
Ensembl chr17:31,537,591...31,569,904
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (PMID:18548003) RGD PMID:18548003 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tp53 tumor protein p53 ISO (PMID:22578566), (PMID:26100857) RGD PMID:22578566, PMID:26100857 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
positive regulation of RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 ISO (PMID:15613540) RGD PMID:15613540 NCBI chr 9:17,125,201...17,163,170
Ensembl chr 9:17,125,201...17,163,170
JBrowse link
post-transcriptional gene silencing by RNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Helz helicase with zinc finger IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:95,767,754...95,911,025
Ensembl chr10:95,770,154...95,906,927
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
G Mov10l1 Mov10 like RISC complex RNA helicase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:129,973,391...130,039,306
Ensembl chr 7:129,973,480...130,037,344
JBrowse link
pre-miRNA export from nucleus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Xpo5 exportin 5 ISO (PMID:14681208), (PMID:15613540) RGD PMID:14681208, PMID:15613540 NCBI chr 9:17,125,201...17,163,170
Ensembl chr 9:17,125,201...17,163,170
JBrowse link
pre-miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific ISO
IEA
(PMID:23622242)
GO_REF:0000107
RGD
Ensembl
PMID:23622242 GO_REF:0000107 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Ago1 argonaute RISC component 1 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 ISO
IEA
ISS
(MGI:MGI:5616320|PMID:16357216)
(PMID:16424907), (PMID:17671087), (PMID:18178619), (PMID:19966796)
GO_REF:0000104
GO_REF:0000024
RGD
UniProt
PMID:16357216, PMID:16424907, PMID:17671087, PMID:18178619, PMID:19966796 GO_REF:0000024, GO_REF:0000104, MGI:MGI:5616320 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 ISO (PMID:19966796) RGD PMID:19966796 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO
IBA
(MGI:MGI:4359358|PMID:18604195)
PMID:21873635
(PMID:15973356), (PMID:16357216), (PMID:18178619), (PMID:23661684), (PMID:25549615)
RGD PMID:15973356, PMID:16357216, PMID:18178619, PMID:18604195, PMID:23661684, PMID:25549615, PMID:21873635 MGI:MGI:4359358, RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Drosha drosha ribonuclease III ISO
IBA
(MGI:MGI:4359358|PMID:18604195)
PMID:21873635
RGD PMID:18604195, PMID:21873635 MGI:MGI:4359358, RGD:13792537 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Lin28a lin-28 homolog A ISO (PMID:18951094), (PMID:19703396)
(MGI:MGI:4359358|PMID:18604195), (MGI:MGI:4359360|PMID:18292307)
RGD PMID:18292307, PMID:18604195, PMID:18951094, PMID:19703396 MGI:MGI:4359358, MGI:MGI:4359360 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Lin28b lin-28 homolog B ISO (PMID:19703396) RGD PMID:19703396 NCBI chr20:50,482,536...50,580,273
Ensembl chr20:50,486,809...50,564,987
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 IEA
ISO
GO_REF:0000107
(PMID:16424907), (PMID:23661684)
Ensembl
RGD
PMID:16424907, PMID:23661684 GO_REF:0000107 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISS
ISO
GO_REF:0000024
(PMID:15973356), (PMID:16357216), (PMID:16424907), (PMID:18178619), (PMID:23661684)
UniProt
RGD
PMID:15973356, PMID:16357216, PMID:16424907, PMID:18178619, PMID:23661684 GO_REF:0000024 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
G Tut4 terminal uridylyl transferase 4 ISO
IBA
(PMID:19703396), (PMID:25979828)
PMID:21873635
RGD PMID:19703396, PMID:25979828, PMID:21873635 RGD:13792537 NCBI chr 5:128,063,880...128,168,726
Ensembl chr 5:128,083,118...128,168,207
JBrowse link
G Tut7 terminal uridylyl transferase 7 ISO
IBA
(PMID:25979828)
PMID:21873635
RGD PMID:25979828, PMID:21873635 RGD:13792537 NCBI chr17:5,225,854...5,279,674
Ensembl chr17:5,225,835...5,271,794
JBrowse link
primary miRNA methylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl3 methyltransferase-like 3 ISO
IBA
(PMID:25799998)
PMID:21873635
RGD PMID:25799998, PMID:21873635 RGD:13792537 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
primary miRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07035787.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr12:22,466,601...22,470,972 JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked ISO (MGI:MGI:6108693|PMID:28819115) RGD PMID:28819115 MGI:MGI:6108693 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Dgcr8 DGCR8 microprocessor complex subunit ISO
IBA
(PMID:15531877), (PMID:15574589), (PMID:24449907), (PMID:24910438)
PMID:21873635
RGD PMID:15531877, PMID:15574589, PMID:24449907, PMID:24910438, PMID:21873635 RGD:13792537 NCBI chr11:86,852,682...86,885,233
Ensembl chr11:86,852,711...86,885,224
JBrowse link
G Drosha drosha ribonuclease III ISO
IBA
(PMID:14508493), (PMID:15574589)
PMID:21873635
RGD PMID:14508493, PMID:15574589, PMID:21873635 RGD:13792537 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26321680)
Ensembl
UniProt
RGD
PMID:26321680 GO_REF:0000024, GO_REF:0000107 NCBI chr 4:81,237,496...81,241,281
Ensembl chr 4:81,237,496...81,241,282
JBrowse link
G Mettl3 methyltransferase-like 3 ISO (PMID:25799998) RGD PMID:25799998 NCBI chr15:28,710,299...28,721,491
Ensembl chr15:28,710,300...28,721,127
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Pus10 pseudouridine synthase 10 ISO (PMID:31819270) RGD PMID:31819270 NCBI chr14:108,411,941...108,479,696
Ensembl chr14:108,412,152...108,479,781
JBrowse link
G Srrt serrate, RNA effector molecule ISO (PMID:19632182)
(MGI:MGI:4359572|PMID:19632182)
RGD PMID:19632182 MGI:MGI:4359572 NCBI chr12:22,457,898...22,471,090 JBrowse link
production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific ISO MGI:MGI:3032487 (MGI:MGI:5495061|PMID:23622242) RGD PMID:23622242 MGI:MGI:5495061 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Ago1 argonaute RISC component 1 ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 ISO MGI:MGI:3056454 (MGI:MGI:4462112|PMID:20424607)
(PMID:19966796), (PMID:23661684)
RGD PMID:19966796, PMID:20424607, PMID:23661684 MGI:MGI:4462112 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 ISO (PMID:22795694) RGD PMID:22795694 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:1926500|MGI:MGI:3589209|MGI:MGI:3589287|MGI:MGI:3622169 (MGI:MGI:3528782|PMID:15713842), (MGI:MGI:3588609|PMID:16040801), (MGI:MGI:3619610|PMID:16462742), (MGI:MGI:4454581|PMID:20463238), (MGI:MGI:4830414|PMID:20805985), (MGI:MGI:5527004|PMID:24209619)
(PMID:15973356), (PMID:23322395), (PMID:23661684), (PMID:26435691)
RGD PMID:15713842, PMID:15973356, PMID:16040801, PMID:16462742, PMID:20463238, PMID:20805985, PMID:23322395, PMID:23661684, PMID:24209619, PMID:26435691 MGI:MGI:3528782, MGI:MGI:3588609, MGI:MGI:3619610, MGI:MGI:4454581, MGI:MGI:4830414, MGI:MGI:5527004 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G NEWGENE_1359268 Smad nuclear interacting protein 1 ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 5:143,063,206...143,070,899
Ensembl chr 5:143,063,099...143,070,884
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 ISO (PMID:23661684) RGD PMID:23661684 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926
JBrowse link
G Pum1 pumilio RNA-binding family member 1 ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635 RGD:13792537 NCBI chr 5:148,781,239...148,911,776
Ensembl chr 5:148,781,222...148,911,803
JBrowse link
G Pum2 pumilio RNA-binding family member 2 ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635 RGD:13792537 NCBI chr 6:33,786,184...33,865,693
Ensembl chr 6:33,786,197...33,865,687
JBrowse link
G Rbm3 RNA binding motif protein 3 ISO (MGI:MGI:3530692|PMID:15684048) RGD PMID:15684048 MGI:MGI:3530692 NCBI chr  X:15,098,880...15,102,344
Ensembl chr  X:15,098,904...15,102,340
JBrowse link
G Snip1 Smad nuclear interacting protein 1 ISO
IBA
ISS
(PMID:18632581)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:18632581, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr15:19,275,273...19,282,753
Ensembl chr 5:143,063,099...143,070,884
JBrowse link
G Spout1 SPOUT domain containing methyltransferase 1 ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635 RGD:13792537 NCBI chr 3:8,743,890...8,751,634
Ensembl chr 3:8,743,882...8,751,324
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO (PMID:15973356), (PMID:23661684) RGD PMID:15973356, PMID:23661684 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
G Trim71 tripartite motif containing 71 ISO
ISS
(PMID:28431233)
GO_REF:0000024
RGD
UniProt
PMID:28431233 GO_REF:0000024 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
G Zc3h7a zinc finger CCCH type containing 7 A ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635 RGD:13792537 NCBI chr10:4,535,651...4,575,643
Ensembl chr10:4,536,180...4,575,646
JBrowse link
G Zc3h7b zinc finger CCCH-type containing 7B ISO
IBA
(PMID:28431233)
PMID:21873635
RGD PMID:28431233, PMID:21873635 RGD:13792537 NCBI chr 7:122,978,999...123,027,166
Ensembl chr 7:122,979,021...123,027,150
JBrowse link
production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07012856.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 2:211,740,637...211,753,297 JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO
IBA
(PMID:15973356), (PMID:17452327), (PMID:23661684)
PMID:21873635
(MGI:MGI:2679763|PMID:14528307), (MGI:MGI:5527004|PMID:24209619)
RGD PMID:14528307, PMID:15973356, PMID:17452327, PMID:23661684, PMID:24209619, PMID:21873635 MGI:MGI:2679763, MGI:MGI:5527004, RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Drosha drosha ribonuclease III IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Henmt1 HEN methyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:211,740,571...211,753,718 JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:17452327)
Ensembl
UniProt
RGD
PMID:17452327 GO_REF:0000024, GO_REF:0000107 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISS
ISO
GO_REF:0000024
(PMID:15973356), (PMID:17452327)
UniProt
RGD
PMID:15973356, PMID:17452327 GO_REF:0000024 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
G Tert telomerase reverse transcriptase ISO (PMID:19701182) RGD PMID:19701182 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
regulation of gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 ISO
ISS
(PMID:25464849)
GO_REF:0000024
RGD
UniProt
PMID:25464849 GO_REF:0000024 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Lin28a lin-28 homolog A ISO MGI:MGI:2685973 (MGI:MGI:4438512|PMID:19898466) RGD PMID:19898466 MGI:MGI:4438512 NCBI chr 5:152,230,343...152,247,873
Ensembl chr 5:152,230,343...152,247,332
JBrowse link
G Mael maelstrom spermatogenic transposon silencer IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr13:84,412,569...84,452,140
Ensembl chr13:84,383,670...84,452,181
JBrowse link
G Mir154 microRNA 154 ISO (MGI:MGI:5705446|PMID:25959411) RGD PMID:25959411 MGI:MGI:5705446 NCBI chr 6:133,888,586...133,888,669
Ensembl chr 6:133,888,586...133,888,669
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C ISO MGI:MGI:4124681 (MGI:MGI:5315650|PMID:22187428) RGD PMID:22187428 MGI:MGI:5315650 NCBI chr10:106,698,359...106,763,639
Ensembl chr10:106,712,127...106,762,043
JBrowse link
G Trim71 tripartite motif containing 71 ISS
ISO
GO_REF:0000024
MGI:MGI:1890546 (MGI:MGI:4438512|PMID:19898466), (MGI:MGI:5448492|PMID:22735451)
UniProt
RGD
PMID:19898466, PMID:22735451 GO_REF:0000024, MGI:MGI:4438512, MGI:MGI:5448492 NCBI chr 8:122,553,015...122,604,787
Ensembl chr 8:122,553,015...122,604,787
JBrowse link
regulation of production of miRNAs involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 TARBP2 subunit of RISC loading complex ISO MGI:MGI:2135565|MGI:MGI:5645258 (MGI:MGI:6094668|PMID:27159388) RGD PMID:27159388 MGI:MGI:6094668 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
regulation of production of siRNA involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tarbp2 TARBP2 subunit of RISC loading complex IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589287 (MGI:MGI:3528782|PMID:15713842) RGD PMID:15713842 MGI:MGI:3528782 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Nrde2 NRDE-2, necessary for RNA interference, domain containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:124,136,949...124,177,426
Ensembl chr 6:124,142,395...124,177,404
JBrowse link
siRNA loading onto RISC involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 ISO
IEA
(PMID:19966796)
GO_REF:0000107
RGD
Ensembl
PMID:19966796 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO (PMID:15973356) RGD PMID:15973356 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
targeting of mRNA for destruction involved in RNA interference term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 ISO
ISS
(PMID:17495927)
GO_REF:0000024
RGD
UniProt
PMID:17495927 GO_REF:0000024 NCBI chr 3:72,125,269...72,137,122
Ensembl chr 3:72,125,273...72,128,973
JBrowse link
G Dhx9 DExH-box helicase 9 ISO (PMID:17531811) RGD PMID:17531811 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:15973356), (PMID:17452327) RGD PMID:15973356, PMID:17452327 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO
ISS
(PMID:15973356)
GO_REF:0000024
RGD
UniProt
PMID:15973356 GO_REF:0000024 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      gene silencing 256
        posttranscriptional gene silencing 140
          host gene silencing in virus induced gene silencing 0
          long-distance posttranscriptional gene silencing 0
          negative regulation of posttranscriptional gene silencing + 21
          positive regulation of posttranscriptional gene silencing + 32
          post-transcriptional gene silencing by RNA + 131
          regulation of posttranscriptional gene silencing + 53
          viral gene silencing in virus induced gene silencing 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        macromolecule metabolic process 10081
          regulation of macromolecule metabolic process 6492
            regulation of gene expression 4799
              negative regulation of gene expression 2157
                gene silencing 256
                  posttranscriptional gene silencing 140
                    host gene silencing in virus induced gene silencing 0
                    long-distance posttranscriptional gene silencing 0
                    negative regulation of posttranscriptional gene silencing + 21
                    positive regulation of posttranscriptional gene silencing + 32
                    post-transcriptional gene silencing by RNA + 131
                    regulation of posttranscriptional gene silencing + 53
                    viral gene silencing in virus induced gene silencing 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.