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ONTOLOGY REPORT - ANNOTATIONS


Term:histone ubiquitination
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Accession:GO:0016574 term browser browse the term
Definition:The modification of histones by addition of ubiquitin groups.
Synonyms:exact_synonym: histone ubiquitinylation;   histone ubiquitylation


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histone ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmi1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 17 85,360,439 85,370,283 RGD:1624291
G Cbx8 chromobox 8 JBrowse link 10 108,148,073 108,150,511 RGD:1624291
G Huwe1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 JBrowse link X 21,474,627 21,603,348 RGD:1600115
RGD:1624291
G Phc1 polyhomeotic homolog 1 JBrowse link 4 155,093,947 155,118,838 RGD:1624291
G Ring1 ring finger protein 1 JBrowse link 20 3,812,287 3,815,834 RGD:1624291
G Rnf2 ring finger protein 2 JBrowse link 13 68,829,714 68,859,920 RGD:1624291
G Rnf20 ring finger protein 20 JBrowse link 5 64,892,996 64,920,397 RGD:1624291
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 10 67,325,101 67,371,588 RGD:1624291
RGD:1600115
G Ube2a ubiquitin-conjugating enzyme E2A JBrowse link X 123,486,988 123,497,726 RGD:13792537
G Ube2b ubiquitin-conjugating enzyme E2B JBrowse link 10 37,439,947 37,454,867 RGD:13792537
G Ube2n ubiquitin-conjugating enzyme E2N JBrowse link 7 36,610,147 36,640,190 RGD:1624291
G Ube2u ubiquitin conjugating enzyme E2 U JBrowse link 5 118,574,647 118,642,810 RGD:13792537
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:1624291
RGD:1600115
G Usp22 ubiquitin specific peptidase 22 JBrowse link 10 47,429,201 47,453,298 RGD:1624291
histone H2A K63-linked ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rnf168 ring finger protein 168 JBrowse link 11 71,721,242 71,743,421 RGD:1600115
RGD:1624291
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1600115
RGD:13792537
RGD:1624291
histone H2A monoubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcor BCL6 co-repressor JBrowse link X 11,570,155 11,692,022 RGD:1624291
G Cul4b cullin 4B JBrowse link X 124,831,391 124,870,329 RGD:1624291
G Ddb1 damage-specific DNA binding protein 1 JBrowse link 1 226,657,561 226,683,356 RGD:1600115
RGD:1624291
G Ddb2 damage specific DNA binding protein 2 JBrowse link 3 80,030,437 80,052,984 RGD:1624291
G Kdm2b lysine demethylase 2B JBrowse link 12 39,021,924 39,161,954 RGD:1624291
G Pcgf1 polycomb group ring finger 1 JBrowse link 4 113,911,129 113,913,718 RGD:1624291
G Ring1 ring finger protein 1 JBrowse link 20 3,812,287 3,815,834 RGD:1624291
RGD:1600115
RGD:13792537
G Rnf168 ring finger protein 168 JBrowse link 11 71,721,242 71,743,421 RGD:1600115
RGD:1624291
G Rnf2 ring finger protein 2 JBrowse link 13 68,829,714 68,859,920 RGD:1624291
RGD:13792537
G Rybp RING1 and YY1 binding protein JBrowse link 4 132,689,623 132,740,823 RGD:1624291
G Skp1 S-phase kinase-associated protein 1 JBrowse link 10 37,594,578 37,609,498 RGD:1624291
RGD:1600115
G Trim37 tripartite motif-containing 37 JBrowse link 10 74,436,165 74,568,636 RGD:1624291
histone H2A ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dtx3l deltex E3 ubiquitin ligase 3L JBrowse link 11
11
67,758,093
67,768,542
67,767,623
67,772,428
RGD:1624291
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1600115
RGD:1624291
G Ube2a ubiquitin-conjugating enzyme E2A JBrowse link X 123,486,988 123,497,726 RGD:1624291
G Ube2b ubiquitin-conjugating enzyme E2B JBrowse link 10 37,439,947 37,454,867 RGD:1624291
G Ubr2 ubiquitin protein ligase E3 component n-recognin 2 JBrowse link 9 16,003,058 16,080,152 RGD:1624291
RGD:13792537
histone H2A-K119 monoubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmi1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 17 85,360,439 85,370,283 RGD:1624291
RGD:13792537
G LOC103692167 polycomb group RING finger protein 1 JBrowse link 4 114,776,680 114,779,447 RGD:13792537
G Pcgf1 polycomb group ring finger 1 JBrowse link 4 113,911,129 113,913,718 RGD:1624291
RGD:13792537
RGD:1600115
G Pcgf2 polycomb group ring finger 2 JBrowse link 10 85,631,829 85,642,591 RGD:1624291
RGD:13792537
G Pcgf3 polycomb group ring finger 3 JBrowse link 14 2,247,805 2,297,155 RGD:1624291
RGD:13792537
G Pcgf5 polycomb group ring finger 5 JBrowse link 1 254,974,688 255,090,925 RGD:1624291
RGD:13792537
G Pcgf6 polycomb group ring finger 6 JBrowse link 1 266,811,418 266,831,022 RGD:1624291
RGD:13792537
RGD:1600115
G RGD1562871 similar to BMI1-like protein JBrowse link X 79,546,624 79,547,767 RGD:13792537
G Rnf2 ring finger protein 2 JBrowse link 13 68,829,714 68,859,920 RGD:1600115
RGD:1624291
G Scml2 Scm polycomb group protein like 2 JBrowse link X 35,305,235 35,431,271 RGD:1624291
G Trim37 tripartite motif-containing 37 JBrowse link 10 74,436,165 74,568,636 RGD:1624291
RGD:13792537
histone H2A-K13 ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rnf168 ring finger protein 168 JBrowse link 11 71,721,242 71,743,421 RGD:1624291
RGD:1600115
histone H2A-K15 ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rnf168 ring finger protein 168 JBrowse link 11 71,721,242 71,743,421 RGD:1600115
RGD:1624291
histone H2B conserved C-terminal lysine ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wac WW domain containing adaptor with coiled-coil JBrowse link 17 60,887,606 60,946,630 RGD:1624291
histone H2B ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:1624291
RGD:1600115
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:1624291
G Dtx3l deltex E3 ubiquitin ligase 3L JBrowse link 11
11
67,758,093
67,768,542
67,767,623
67,772,428
RGD:1624291
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:1624291
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1624291
G Rnf20 ring finger protein 20 JBrowse link 5 64,892,996 64,920,397 RGD:1624291
G Rnf40 ring finger protein 40 JBrowse link 1 199,037,472 199,052,823 RGD:1624291
G Rnf8 ring finger protein 8 JBrowse link 20 8,285,380 8,309,858 RGD:1600115
RGD:1624291
G Ube2e1 ubiquitin-conjugating enzyme E2E 1 JBrowse link 15 8,124,869 8,178,252 RGD:1624291
RGD:13792537
histone monoubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atxn7l3 ataxin 7-like 3 JBrowse link 10 90,234,749 90,241,757 RGD:1624291
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:1624291
RGD:1600115
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:1624291
G Dtx3l deltex E3 ubiquitin ligase 3L JBrowse link 11
11
67,758,093
67,768,542
67,767,623
67,772,428
RGD:1624291
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:1624291
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1624291
G Rag1 recombination activating 1 JBrowse link 3 91,206,394 91,217,491 RGD:1624291
RGD:13792537
G Rnf20 ring finger protein 20 JBrowse link 5 64,892,996 64,920,397 RGD:1624291
G Rnf40 ring finger protein 40 JBrowse link 1 199,037,472 199,052,823 RGD:1624291
G Ube2e1 ubiquitin-conjugating enzyme E2E 1 JBrowse link 15 8,124,869 8,178,252 RGD:1624291
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:1624291
RGD:13792537
RGD:1600115
G Wac WW domain containing adaptor with coiled-coil JBrowse link 17 60,887,606 60,946,630 RGD:1624291
negative regulation of histone H2A K63-linked ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 JBrowse link 1 222,451,674 222,459,952 RGD:1624291
RGD:13792537
RGD:1600115
G Otub2 OTU deubiquitinase, ubiquitin aldehyde binding 2 JBrowse link 6 127,282,445 127,301,086 RGD:13792537
G Trip12 thyroid hormone receptor interactor 12 JBrowse link 9 92,305,059 92,435,388 RGD:1600115
RGD:13792537
RGD:1624291
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 JBrowse link 7
7
76,789,110
76,839,661
76,835,517
76,907,441
RGD:1600115
RGD:13792537
RGD:1624291
positive regulation of histone H2B ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:1624291
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:1624291
G Rnf20 ring finger protein 20 JBrowse link 5 64,892,996 64,920,397 RGD:1624291
G Rnf40 ring finger protein 40 JBrowse link 1 199,037,472 199,052,823 RGD:1624291
positive regulation of histone ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:1624291
G Kdm2a lysine demethylase 2A JBrowse link 1 219,566,130 219,642,294 RGD:1624291
regulation of histone H2B conserved C-terminal lysine ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wdr70 WD repeat domain 70 JBrowse link 2 56,944,462 57,196,522 RGD:13792537
regulation of histone ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Park7 Parkinsonism associated deglycase JBrowse link 5 167,982,438 168,004,724 RGD:1600115
RGD:1624291
G Ube2n ubiquitin-conjugating enzyme E2N JBrowse link 7 36,610,147 36,640,190 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    cellular process 18617
      cellular component organization or biogenesis 6706
        cellular component organization 6456
          chromatin organization 834
            covalent chromatin modification 507
              histone modification 492
                histone ubiquitination 52
                  histone H2A ubiquitination + 29
                  histone H2B ubiquitination + 12
                  histone H3 ubiquitination + 0
                  histone monoubiquitination + 32
                  negative regulation of histone ubiquitination + 4
                  positive regulation of histone ubiquitination + 6
                  regulation of histone ubiquitination + 13
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12096
      organic substance metabolic process 11494
        organonitrogen compound metabolic process 7094
          protein metabolic process 6185
            cellular protein metabolic process 5521
              cellular protein modification process 3901
                protein modification by small protein conjugation or removal 934
                  protein modification by small protein conjugation 798
                    protein ubiquitination 751
                      histone ubiquitination 52
                        histone H2A ubiquitination + 29
                        histone H2B ubiquitination + 12
                        histone H3 ubiquitination + 0
                        histone monoubiquitination + 32
                        negative regulation of histone ubiquitination + 4
                        positive regulation of histone ubiquitination + 6
                        regulation of histone ubiquitination + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.