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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deacetylation
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Accession:GO:0016575 term browser browse the term
Definition:The modification of histones by removal of acetyl groups.


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histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A ISS UniProtKB GO_REF:0000024 NCBI chr12:56,595,596...56,636,816
Ensembl chr12:56,595,596...56,636,816
JBrowse link
G BRMS1 BRMS1 transcriptional repressor and anoikis regulator IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:66,337,333...66,345,125
Ensembl chr11:66,337,333...66,345,125
JBrowse link
G BRMS1L BRMS1 like transcriptional repressor IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:35,825,596...35,871,963
Ensembl chr14:35,826,338...35,932,325
JBrowse link
G HDAC1 histone deacetylase 1 IMP (PMID:19182791) UniProtKB PMID:19182791 NCBI chr 1:32,292,083...32,333,628
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HDAC10 histone deacetylase 10 IDA (PMID:11739383), (PMID:11861901) UniProtKB PMID:11739383, PMID:11861901 NCBI chr22:50,245,183...50,251,265
Ensembl chr22:50,245,183...50,251,405
JBrowse link
G HDAC11 histone deacetylase 11 IDA (PMID:11948178) UniProtKB PMID:11948178 NCBI chr 3:13,478,903...13,506,416
Ensembl chr 3:13,479,724...13,506,424
JBrowse link
G HDAC2 histone deacetylase 2 IMP
IEA
(PMID:19372552) BHF-UCL
InterPro
PMID:19372552 GO_REF:0000002 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
JBrowse link
G HDAC3 histone deacetylase 3 ISO (MGI:MGI:3580040|PMID:15832170)
(MGI:MGI:3807603|PMID:17464331)
MGI PMID:15832170, PMID:17464331 MGI:MGI:3580040, MGI:MGI:3807603 NCBI chr 5:141,620,881...141,636,849
Ensembl chr 5:141,620,876...141,636,849
JBrowse link
G HDAC4 histone deacetylase 4 IDA
IMP
(PMID:10869435)
(PMID:18850004)
BHF-UCL PMID:10869435, PMID:18850004 NCBI chr 2:239,048,168...239,401,649
Ensembl chr 2:239,048,168...239,401,654
JBrowse link
G HDAC5 histone deacetylase 5 IDA (PMID:10869435) BHF-UCL PMID:10869435 NCBI chr17:44,076,753...44,123,651
Ensembl chr17:44,076,746...44,123,702
JBrowse link
G HDAC6 histone deacetylase 6 IDA
ISS
(PMID:10220385)
(PMID:11861901)
BHF-UCL
UniProtKB
PMID:10220385, PMID:11861901 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982
JBrowse link
G HDAC8 histone deacetylase 8 IEA InterPro GO_REF:0000002 NCBI chr  X:72,329,516...72,573,099
Ensembl chr  X:72,329,516...72,573,101
JBrowse link
G HDAC9 histone deacetylase 9 IDA
IEA
(PMID:11535832) BHF-UCL
GOC
PMID:11535832 GO_REF:0000108 NCBI chr 7:18,086,825...19,002,416
Ensembl chr 7:18,086,949...19,002,416
JBrowse link
G HOPX HOP homeobox ISO (MGI:MGI:3712793|PMID:12975471) MGI PMID:12975471 MGI:MGI:3712793 NCBI chr 4:56,647,992...56,681,866
Ensembl chr 4:56,647,988...56,681,899
JBrowse link
G MIDEAS mitotic deacetylase associated SANT domain protein IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:73,715,122...73,790,285
Ensembl chr14:73,715,122...73,790,285
JBrowse link
G MIER1 MIER1 transcriptional regulator IDA
IBA
(PMID:28046085)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:28046085 NCBI chr 1:66,924,900...66,988,619
Ensembl chr 1:66,924,895...66,988,619
JBrowse link
G MIER2 MIER family member 2 IDA
IBA
(PMID:28046085)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:28046085 NCBI chr19:305,573...344,841
Ensembl chr19:301,444...344,815
JBrowse link
G MIER3 MIER family member 3 NOT IDA (PMID:28046085) UniProtKB PMID:28046085 NCBI chr 5:56,919,602...56,952,123
Ensembl chr 5:56,919,602...56,971,675
JBrowse link
G MORF4L1 mortality factor 4 like 1 IDA
IBA
(PMID:14966270)
(PMID:21873635)
UniProtKB
GO_Central
PMID:14966270, PMID:21873635 NCBI chr15:78,872,890...78,898,139
Ensembl chr15:78,810,487...78,898,139
JBrowse link
G MORF4L2 mortality factor 4 like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:103,675,498...103,688,047
Ensembl chr  X:103,675,496...103,688,158
JBrowse link
G MSL3 MSL complex subunit 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:11,758,159...11,775,772
Ensembl chr  X:11,758,159...11,775,772
JBrowse link
G MSL3P1 MSL complex subunit 3 pseudogene 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:233,865,437...233,868,409
Ensembl chr 2:233,865,437...233,868,444
JBrowse link
G MTA1 metastasis associated 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:105,419,827...105,470,729
Ensembl chr14:105,419,820...105,470,729
JBrowse link
G MTA2 metastasis associated 1 family member 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:62,593,214...62,601,865
Ensembl chr11:62,593,214...62,601,865
JBrowse link
G MTA3 metastasis associated 1 family member 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:42,494,110...42,802,118
Ensembl chr 2:42,494,569...42,756,947
JBrowse link
G PHB prohibitin IDA (PMID:12466959) UniProtKB PMID:12466959 NCBI chr17:49,404,052...49,414,882
Ensembl chr17:49,404,049...49,414,905
JBrowse link
G PRDM5 PR/SET domain 5 IMP
IBA
(PMID:17636019)
(PMID:21873635)
UniProtKB
GO_Central
PMID:17636019, PMID:21873635 NCBI chr 4:120,684,906...120,922,849
Ensembl chr 4:120,684,919...120,922,870
JBrowse link
G RBM14 RNA binding motif protein 14 IPI (PMID:11443112) UniProtKB PMID:11443112 NCBI chr11:66,616,630...66,629,934
Ensembl chr11:66,616,582...66,627,347
Ensembl chr11:66,616,582...66,627,347
JBrowse link
G RBM14-RBM4 RBM14-RBM4 readthrough IPI (PMID:11443112) UniProtKB PMID:11443112 NCBI chr11:66,616,630...66,646,468
Ensembl chr11:66,616,626...66,646,469
JBrowse link
G RCOR1 REST corepressor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:102,592,593...102,730,572
Ensembl chr14:102,592,649...102,730,561
JBrowse link
G RCOR2 REST corepressor 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr11:63,911,230...63,917,164
Ensembl chr11:63,911,230...63,917,164
JBrowse link
G RCOR3 REST corepressor 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:211,259,366...211,316,385
Ensembl chr 1:211,258,377...211,316,385
JBrowse link
G SIN3A SIN3 transcription regulator family member A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:75,369,379...75,455,819
Ensembl chr15:75,369,379...75,455,842
JBrowse link
G SIN3B SIN3 transcription regulator family member B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:16,829,398...16,880,355
Ensembl chr19:16,829,400...16,880,353
JBrowse link
G SIRT1 sirtuin 1 IDA (PMID:12006491), (PMID:15469825), (PMID:16079181), (PMID:17172643) BHF-UCL PMID:12006491, PMID:15469825, PMID:16079181, PMID:17172643 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SIRT2 sirtuin 2 NOT TAS
IDA
(PMID:12697818)
(PMID:24177535)
UniProtKB PMID:12697818, PMID:24177535 NCBI chr19:38,878,555...38,899,733
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G SIRT3 sirtuin 3 IEA GOC GO_REF:0000108 NCBI chr11:215,030...236,931
Ensembl chr11:215,030...236,931
JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component IDA
IBA
(PMID:21239494)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21239494, PMID:21873635 NCBI chr12:118,373,189...118,418,033
Ensembl chr12:118,376,555...118,418,033
JBrowse link
G TBL1X transducin beta like 1 X-linked IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:9,463,295...9,719,740
Ensembl chr  X:9,463,295...9,741,037
JBrowse link
G TBL1XR1 TBL1X receptor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:177,019,344...177,197,482
Ensembl chr 3:177,019,340...177,228,000
JBrowse link
G TBL1Y transducin beta like 1 Y-linked IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  Y:6,908,594...7,107,154
Ensembl chr  Y:6,910,686...7,101,970
JBrowse link
G TRERF1 transcriptional regulating factor 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:42,224,931...42,452,224
Ensembl chr 6:42,224,931...42,452,051
JBrowse link
G ZNF541 zinc finger protein 541 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:47,520,685...47,573,248
Ensembl chr19:47,520,685...47,555,856
JBrowse link
histone H3 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AL133500.1 novel protein IEA GOC GO_REF:0000108 Ensembl chr  X:72,301,691...72,572,843 JBrowse link
G ATXN3 ataxin 3 ISO RGD PMID:17079677 RGD:5688291 NCBI chr14:92,058,552...92,106,582
Ensembl chr14:92,044,496...92,106,621
JBrowse link
G ELK4 ETS transcription factor ELK4 IDA (PMID:22722849) UniProtKB PMID:22722849 NCBI chr 1:205,607,943...205,632,872
Ensembl chr 1:205,597,556...205,632,011
Ensembl chr 1:205,597,556...205,632,011
JBrowse link
G HDAC1 histone deacetylase 1 IDA
IEA
IBA
(PMID:12590135)
(PMID:21873635)
BHF-UCL
GOC
GO_Central
PMID:12590135, PMID:21873635 GO_REF:0000108 NCBI chr 1:32,292,083...32,333,628
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HDAC11 histone deacetylase 11 IEA GOC GO_REF:0000108 NCBI chr 3:13,478,903...13,506,416
Ensembl chr 3:13,479,724...13,506,424
JBrowse link
G HDAC2 histone deacetylase 2 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
JBrowse link
G HDAC3 histone deacetylase 3 IBA
IEA
(PMID:21873635) GO_Central
GOC
PMID:21873635 GO_REF:0000108 NCBI chr 5:141,620,881...141,636,849
Ensembl chr 5:141,620,876...141,636,849
JBrowse link
G HDAC4 histone deacetylase 4 IDA
IEA
(PMID:12590135) BHF-UCL
GOC
PMID:12590135 GO_REF:0000108 NCBI chr 2:239,048,168...239,401,649
Ensembl chr 2:239,048,168...239,401,654
JBrowse link
G HDAC5 histone deacetylase 5 IEA GOC GO_REF:0000108 NCBI chr17:44,076,753...44,123,651
Ensembl chr17:44,076,746...44,123,702
JBrowse link
G HDAC6 histone deacetylase 6 IEA GOC GO_REF:0000108 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982
JBrowse link
G HDAC7 histone deacetylase 7 IEA GOC GO_REF:0000108 NCBI chr12:47,782,722...47,820,612
Ensembl chr12:47,782,722...47,833,132
JBrowse link
G HDAC8 histone deacetylase 8 IEA
IBA
(PMID:21873635) GOC
GO_Central
PMID:21873635 GO_REF:0000108 NCBI chr  X:72,329,516...72,573,099
Ensembl chr  X:72,329,516...72,573,101
JBrowse link
G HDAC9 histone deacetylase 9 IDA
IEA
(PMID:12590135) BHF-UCL
GOC
PMID:12590135 GO_REF:0000108 NCBI chr 7:18,086,825...19,002,416
Ensembl chr 7:18,086,949...19,002,416
JBrowse link
G PER1 period circadian regulator 1 ISS UniProtKB GO_REF:0000024 NCBI chr17:8,140,470...8,156,360
Ensembl chr17:8,140,472...8,156,506
JBrowse link
G PER2 period circadian regulator 2 ISS UniProtKB GO_REF:0000024 NCBI chr 2:238,244,038...238,290,102
Ensembl chr 2:238,244,044...238,290,102
JBrowse link
G SFPQ splicing factor proline and glutamine rich ISS UniProtKB GO_REF:0000024 NCBI chr 1:35,176,380...35,193,174
Ensembl chr 1:35,176,378...35,193,145
JBrowse link
G SIRT1 sirtuin 1 IMP
IBA
IDA
(PMID:17505061)
(PMID:21873635)
(PMID:20027304)
BHF-UCL
GO_Central
PMID:17505061, PMID:20027304, PMID:21873635 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SIRT2 sirtuin 2 IMP (PMID:23908241) UniProtKB PMID:23908241 NCBI chr19:38,878,555...38,899,733
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G SIRT6 sirtuin 6 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:4,174,109...4,182,563
Ensembl chr19:4,174,109...4,182,566
JBrowse link
G SIRT7 sirtuin 7 IDA
IBA
(PMID:22722849), (PMID:26907567), (PMID:28655758), (PMID:30420520), (PMID:30653310)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635, PMID:22722849, PMID:26907567, PMID:28655758, PMID:30420520, PMID:30653310 NCBI chr17:81,911,939...81,918,176
Ensembl chr17:81,911,939...81,921,323
JBrowse link
G SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 IMP (PMID:21549307) UniProtKB PMID:21549307 NCBI chr 4:94,207,608...94,291,292
Ensembl chr 4:94,207,611...94,291,292
JBrowse link
histone H3-K9 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIRT1 sirtuin 1 IEA GOC GO_REF:0000108 NCBI chr10:67,884,656...67,918,390
Ensembl chr10:67,884,656...67,918,390
JBrowse link
G SIRT6 sirtuin 6 IEA GOC GO_REF:0000108 NCBI chr19:4,174,109...4,182,563
Ensembl chr19:4,174,109...4,182,566
JBrowse link
histone H4 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAZ2A bromodomain adjacent to zinc finger domain 2A ISO (MGI:MGI:3653583|PMID:16678107) MGI PMID:16678107 MGI:MGI:3653583 NCBI chr12:56,595,596...56,636,816
Ensembl chr12:56,595,596...56,636,816
JBrowse link
G HDAC1 histone deacetylase 1 IDA
IBA
(PMID:12590135)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:12590135, PMID:21873635 NCBI chr 1:32,292,083...32,333,628
Ensembl chr 1:32,292,083...32,333,635
JBrowse link
G HDAC2 histone deacetylase 2 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
JBrowse link
G HDAC3 histone deacetylase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:141,620,881...141,636,849
Ensembl chr 5:141,620,876...141,636,849
JBrowse link
G HDAC4 histone deacetylase 4 IDA (PMID:12590135) BHF-UCL PMID:12590135 NCBI chr 2:239,048,168...239,401,649
Ensembl chr 2:239,048,168...239,401,654
JBrowse link
G HDAC8 histone deacetylase 8 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:72,329,516...72,573,099
Ensembl chr  X:72,329,516...72,573,101
JBrowse link
G HDAC9 histone deacetylase 9 IDA (PMID:12590135) BHF-UCL PMID:12590135 NCBI chr 7:18,086,825...19,002,416
Ensembl chr 7:18,086,949...19,002,416
JBrowse link
G RCOR1 REST corepressor 1 IDA (PMID:17555596) UniProtKB PMID:17555596 NCBI chr14:102,592,593...102,730,572
Ensembl chr14:102,592,649...102,730,561
JBrowse link
G REST RE1 silencing transcription factor IDA (PMID:17555596) UniProtKB PMID:17555596 NCBI chr 4:56,907,900...56,935,847
Ensembl chr 4:56,907,876...56,966,808
Ensembl chr 4:56,907,876...56,966,808
JBrowse link
G SIRT2 sirtuin 2 IDA (PMID:16648462), (PMID:17488717) UniProtKB PMID:16648462, PMID:17488717 NCBI chr19:38,878,555...38,899,733
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G SIRT7 sirtuin 7 IEA GOC GO_REF:0000108 NCBI chr17:81,911,939...81,918,176
Ensembl chr17:81,911,939...81,921,323
JBrowse link
G SMARCAD1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 IMP (PMID:21549307) UniProtKB PMID:21549307 NCBI chr 4:94,207,608...94,291,292
Ensembl chr 4:94,207,611...94,291,292
JBrowse link
histone H4-K12 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC3 histone deacetylase 3 ISO (MGI:MGI:5902654|PMID:27798112) MGI PMID:27798112 MGI:MGI:5902654 NCBI chr 5:141,620,881...141,636,849
Ensembl chr 5:141,620,876...141,636,849
JBrowse link
histone H4-K16 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC9 histone deacetylase 9 IDA (PMID:28855441) ARUK-UCL PMID:28855441 NCBI chr 7:18,086,825...19,002,416
Ensembl chr 7:18,086,949...19,002,416
JBrowse link
negative regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KDM5A lysine demethylase 5A ISS UniProtKB GO_REF:0000024 NCBI chr12:280,057...389,320
Ensembl chr12:280,057...389,320
JBrowse link
G SPHK2 sphingosine kinase 2 IDA (PMID:19729656) UniProt PMID:19729656 NCBI chr19:48,619,409...48,630,407
Ensembl chr19:48,619,291...48,630,717
JBrowse link
negative regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP3 forkhead box P3 IGI (PMID:19276356) BHF-UCL PMID:19276356 NCBI chr  X:49,250,436...49,264,932
Ensembl chr  X:49,250,438...49,270,477
Ensembl chr  X:49,250,438...49,270,477
JBrowse link
G PRMT6 protein arginine methyltransferase 6 IDA (PMID:30420520) UniProt PMID:30420520 NCBI chr 1:107,056,674...107,059,294
Ensembl chr 1:107,056,674...107,067,636
JBrowse link
G SKI SKI proto-oncogene IEA GOC GO_REF:0000108 NCBI chr 1:2,228,319...2,310,213
Ensembl chr 1:2,228,319...2,310,213
JBrowse link
G SPHK2 sphingosine kinase 2 IDA (PMID:19729656) UniProt PMID:19729656 NCBI chr19:48,619,409...48,630,407
Ensembl chr19:48,619,291...48,630,717
JBrowse link
G UCN urocortin IEA GOC GO_REF:0000108 NCBI chr 2:27,307,400...27,308,445
Ensembl chr 2:27,307,400...27,308,445
JBrowse link
G USP17L2 ubiquitin specific peptidase 17 like family member 2 IMP (PMID:21239494) UniProtKB PMID:21239494 NCBI chr 8:12,137,168...12,138,760
Ensembl chr 8:12,137,168...12,139,077
JBrowse link
positive regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C6orf89 chromosome 6 open reading frame 89 IDA
IBA
(PMID:23460338)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:23460338 NCBI chr 6:36,834,886...36,928,964
Ensembl chr 6:36,871,870...36,928,964
JBrowse link
G LRRK2 leucine rich repeat kinase 2 IEA Ensembl GO_REF:0000107 NCBI chr12:40,224,890...40,369,285
Ensembl chr12:40,196,744...40,369,285
JBrowse link
G PINK1 PTEN induced kinase 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:20,633,458...20,651,511
Ensembl chr 1:20,633,458...20,651,511
JBrowse link
G PRKD1 protein kinase D1 IGI (PMID:20497126) BHF-UCL PMID:20497126 NCBI chr14:29,576,479...29,927,847
Ensembl chr14:29,576,479...30,191,898
JBrowse link
G PRKD2 protein kinase D2 IGI (PMID:20497126) BHF-UCL PMID:20497126 NCBI chr19:46,674,316...46,717,114
Ensembl chr19:46,674,275...46,717,127
JBrowse link
G VEGFA vascular endothelial growth factor A IDA (PMID:20497126) BHF-UCL PMID:20497126 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
positive regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP8 A-kinase anchoring protein 8 IMP (PMID:16980585) UniProtKB PMID:16980585 NCBI chr19:15,353,385...15,379,787
Ensembl chr19:15,353,385...15,379,798
JBrowse link
G AKAP8L A-kinase anchoring protein 8 like IMP (PMID:16980585) UniProtKB PMID:16980585 NCBI chr19:15,380,050...15,418,988
Ensembl chr19:15,380,050...15,419,141
JBrowse link
G BCL6 BCL6 transcription repressor IEA Ensembl GO_REF:0000107 NCBI chr 3:187,721,377...187,745,472
Ensembl chr 3:187,721,377...187,745,725
JBrowse link
G CTBP1 C-terminal binding protein 1 IMP (PMID:21102443) BHF-UCL PMID:21102443 NCBI chr 4:1,211,444...1,250,355
Ensembl chr 4:1,211,445...1,249,953
Ensembl chr 4:1,211,445...1,249,953
JBrowse link
G ING2 inhibitor of growth family member 2 ISS (PMID:21124965) BHF-UCL PMID:21124965 NCBI chr 4:183,505,058...183,512,429
Ensembl chr 4:183,505,058...183,512,429
JBrowse link
G JDP2 Jun dimerization protein 2 IEA Ensembl GO_REF:0000107 NCBI chr14:75,426,692...75,474,107
Ensembl chr14:75,427,716...75,474,111
JBrowse link
G LPIN1 lipin 1 ISO (MGI:MGI:4819323|PMID:20385772) MGI PMID:20385772 MGI:MGI:4819323 NCBI chr 2:11,677,544...11,827,409
Ensembl chr 2:11,677,595...11,827,409
JBrowse link
G NCOR1 nuclear receptor corepressor 1 ISO (MGI:MGI:3821398|PMID:19037247) MGI PMID:19037247 MGI:MGI:3821398 NCBI chr17:16,029,157...16,216,475
Ensembl chr17:16,029,157...16,218,185
JBrowse link
G NIPBL NIPBL cohesin loading factor IDA (PMID:18854353) BHF-UCL PMID:18854353 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413
JBrowse link
G PML PML nuclear body scaffold IDA (PMID:11259576) UniProtKB PMID:11259576 NCBI chr15:73,994,716...74,047,827
Ensembl chr15:73,994,673...74,047,827
JBrowse link
G SDR16C5 short chain dehydrogenase/reductase family 16C member 5 IDA (PMID:16691198) CAFA PMID:16691198 NCBI chr 8:56,300,005...56,320,560
Ensembl chr 8:56,300,010...56,320,776
JBrowse link
G SREBF1 sterol regulatory element binding transcription factor 1 IEA Ensembl GO_REF:0000107 NCBI chr17:17,811,334...17,837,017
Ensembl chr17:17,810,399...17,837,011
JBrowse link
G TGFB1 transforming growth factor beta 1 IEA Ensembl GO_REF:0000107 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TP53 tumor protein p53 IEA Ensembl GO_REF:0000107 NCBI chr17:7,668,402...7,687,550
Ensembl chr17:7,661,779...7,687,538
Ensembl chr17:7,661,779...7,687,538
JBrowse link
G ZBTB7B zinc finger and BTB domain containing 7B ISS UniProtKB GO_REF:0000024 NCBI chr 1:155,002,628...155,018,523
Ensembl chr 1:155,002,630...155,018,522
JBrowse link
regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAMK2D calcium/calmodulin dependent protein kinase II delta TAS (PMID:23283722) BHF-UCL PMID:23283722 NCBI chr 4:113,451,032...113,762,177
Ensembl chr 4:113,451,032...113,761,927
JBrowse link
regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JDP2 Jun dimerization protein 2 IEA InterPro GO_REF:0000002 NCBI chr14:75,426,692...75,474,107
Ensembl chr14:75,427,716...75,474,111
JBrowse link
G MAPK8 mitogen-activated protein kinase 8 IEA GOC GO_REF:0000108 NCBI chr10:48,306,673...48,439,360
Ensembl chr10:48,306,639...48,439,360
JBrowse link
G TADA2A transcriptional adaptor 2A IEA Ensembl GO_REF:0000107 NCBI chr17:37,406,877...37,479,725
Ensembl chr17:37,406,886...37,479,725
JBrowse link
G TADA3 transcriptional adaptor 3 IEA Ensembl GO_REF:0000107 NCBI chr 3:9,779,964...9,793,011
Ensembl chr 3:9,779,860...9,793,011
JBrowse link
G ZNHIT1 zinc finger HIT-type containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:101,218,165...101,224,191
Ensembl chr 7:101,218,165...101,224,190
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18626
    cellular process 17648
      cellular component organization or biogenesis 7120
        cellular component organization 6929
          chromatin organization 879
            covalent chromatin modification 523
              histone modification 509
                histone deacetylation 87
                  histone H3 deacetylation + 21
                  histone H4 deacetylation + 12
                  histone deacetylation at centromere + 0
                  negative regulation of histone deacetylation + 7
                  positive regulation of histone deacetylation + 21
                  regulation of histone deacetylation + 33
Path 2
Term Annotations click to browse term
  biological_process 18626
    metabolic process 12276
      organic substance metabolic process 11712
        macromolecule metabolic process 10177
          macromolecule modification 4667
            protein modification process 4435
              cellular protein modification process 4435
                protein deacylation 119
                  protein deacetylation 109
                    histone deacetylation 87
                      histone H3 deacetylation + 21
                      histone H4 deacetylation + 12
                      histone deacetylation at centromere + 0
                      negative regulation of histone deacetylation + 7
                      positive regulation of histone deacetylation + 21
                      regulation of histone deacetylation + 33
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.