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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deacetylation
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Accession:GO:0016575 term browser browse the term
Definition:The modification of histones by removal of acetyl groups.


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histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A IDA (MGI:MGI:3852313|PMID:12198165) UniProtKB PMID:12198165 MGI:MGI:3852313 NCBI chr10:128,091,370...128,129,303
Ensembl chr10:128,091,577...128,129,303
JBrowse link
G Brms1 breast cancer metastasis-suppressor 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:5,041,363...5,049,912
Ensembl chr19:5,041,354...5,049,917
JBrowse link
G Brms1l breast cancer metastasis-suppressor 1-like IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr12:55,836,324...55,869,736
Ensembl chr12:55,836,324...55,869,736
JBrowse link
G Gm21992 predicted gene 21992 ISO (PMID:11443112) UniProtKB PMID:11443112 NCBI chr19:4,742,913...4,811,634
Ensembl chr19:4,742,913...4,811,612
JBrowse link
G Hdac1 histone deacetylase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hdac10 histone deacetylase 10 ISO (MGI:MGI:2156133|PMID:11677242) MGI PMID:11677242 GO_REF:0000096, MGI:MGI:2156133, MGI:MGI:4834177 NCBI chr15:89,123,303...89,128,700
Ensembl chr15:89,123,307...89,128,700
JBrowse link
G Hdac11 histone deacetylase 11 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:91,156,670...91,174,692
Ensembl chr 6:91,156,665...91,174,692
JBrowse link
G Hdac2 histone deacetylase 2 IGI
ISO
(MGI:MGI:3712793|PMID:12975471) MGI PMID:12975471 GO_REF:0000096, MGI:MGI:3712793, MGI:MGI:4834177 NCBI chr10:36,974,297...37,001,889
Ensembl chr10:36,974,544...37,001,889
JBrowse link
G Hdac3 histone deacetylase 3 IMP
IGI
(MGI:MGI:3580040|PMID:15832170)
(MGI:MGI:3807603|PMID:17464331)
MGI PMID:15832170, PMID:17464331 MGI:MGI:3580040, MGI:MGI:3807603 NCBI chr18:37,936,971...37,955,015
Ensembl chr18:37,935,844...37,955,016
JBrowse link
G Hdac4 histone deacetylase 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:91,928,779...92,195,702
Ensembl chr 1:91,928,779...92,195,699
JBrowse link
G Hdac5 histone deacetylase 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:102,195,747...102,230,172
Ensembl chr11:102,194,432...102,230,166
JBrowse link
G Hdac6 histone deacetylase 6 ISO
IMP
(MGI:MGI:5605128|PMID:24882211) MGI
CACAO
PMID:24882211 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5605128 NCBI chr  X:7,930,116...7,948,047
Ensembl chr  X:7,930,120...7,947,889
JBrowse link
G Hdac7 histone deacetylase 7 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr15:97,792,661...97,844,502
Ensembl chr15:97,792,664...97,844,502
JBrowse link
G Hdac8 histone deacetylase 8 IEA UniProt GO_REF:0000002, MGI:MGI:2152098 NCBI chr  X:102,284,638...102,505,381
Ensembl chr  X:102,284,639...102,505,359
JBrowse link
G Hdac9 histone deacetylase 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:34,047,580...34,917,095
Ensembl chr12:34,047,580...34,917,095
JBrowse link
G Hopx HOP homeobox IGI (MGI:MGI:3712793|PMID:12975471) MGI PMID:12975471 MGI:MGI:3712793 NCBI chr 5:77,086,986...77,115,123
Ensembl chr 5:77,086,988...77,115,121
JBrowse link
G Mideas mitotic deacetylase associated SANT domain protein IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr12:84,149,168...84,218,881
Ensembl chr12:84,149,176...84,218,881
JBrowse link
G Mier1 MEIR1 treanscription regulator ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 4:103,114,324...103,165,754
Ensembl chr 4:103,114,390...103,165,754
JBrowse link
G Mier2 MIER family member 2 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr10:79,540,245...79,557,042
Ensembl chr10:79,540,245...79,555,199
JBrowse link
G Mier3 MIER family member 3 NOT ISO (PMID:28046085) UniProtKB PMID:28046085 NCBI chr13:111,686,073...111,718,596
Ensembl chr13:111,680,979...111,718,596
JBrowse link
G Morf4l1 mortality factor 4 like 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 9:90,091,669...90,114,820
Ensembl chr 9:90,091,665...90,114,774
JBrowse link
G Morf4l2 mortality factor 4 like 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:136,732,942...136,743,686
Ensembl chr  X:136,732,942...136,743,690
JBrowse link
G Msl3 MSL complex subunit 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:168,651,267...168,674,354
Ensembl chr  X:168,654,117...168,673,898
JBrowse link
G Msl3l2 MSL3 like 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:56,083,835...56,116,880
Ensembl chr10:56,106,917...56,116,880
JBrowse link
G Mta1 metastasis associated 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr12:113,098,248...113,137,206
Ensembl chr12:113,098,278...113,137,206
JBrowse link
G Mta2 metastasis-associated gene family, member 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:8,941,920...8,952,300
Ensembl chr19:8,941,875...8,952,303
JBrowse link
G Mta3 metastasis associated 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr17:83,706,163...83,823,715
Ensembl chr17:83,706,163...83,821,516
JBrowse link
G Phb prohibitin ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:95,666,957...95,680,773
Ensembl chr11:95,666,957...95,680,773
JBrowse link
G Prdm5 PR domain containing 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:65,777,656...65,937,622
Ensembl chr 6:65,778,988...65,937,010
JBrowse link
G Rbm14 RNA binding motif protein 14 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr19:4,800,566...4,811,634
Ensembl chr19:4,800,569...4,811,634
JBrowse link
G Rcor1 REST corepressor 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr12:111,039,367...111,115,902
Ensembl chr12:111,039,351...111,115,901
JBrowse link
G Rcor2 REST corepressor 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr19:7,267,394...7,275,225
Ensembl chr19:7,267,325...7,275,225
JBrowse link
G Rcor3 REST corepressor 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 1:192,098,546...192,138,074
Ensembl chr 1:192,098,546...192,138,062
JBrowse link
G Sin3a transcriptional regulator, SIN3A (yeast) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 9:57,071,991...57,128,368
Ensembl chr 9:57,072,040...57,128,366
JBrowse link
G Sin3b transcriptional regulator, SIN3B (yeast) IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 8:72,723,270...72,758,203
Ensembl chr 8:72,723,285...72,758,201
JBrowse link
G Sirt1 sirtuin 1 IGI
IDA
ISO
(MGI:MGI:5493185|PMID:23160044)
(MGI:MGI:1891853|PMID:10693811), (MGI:MGI:4887284|PMID:20972425)
MGI PMID:10693811, PMID:20972425, PMID:23160044 GO_REF:0000096, MGI:MGI:1891853, MGI:MGI:4834177, MGI:MGI:4887284, MGI:MGI:5493185 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
G Sirt2 sirtuin 2 NOT IGI
ISO
(MGI:MGI:4462728|PMID:20562830)
(PMID:24177535)
MGI
UniProtKB
PMID:20562830, PMID:24177535 MGI:MGI:4462728 NCBI chr 7:28,766,752...28,788,665
Ensembl chr 7:28,766,735...28,788,661
JBrowse link
G Suds3 suppressor of defective silencing 3 homolog (S. cerevisiae) ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 5:117,091,678...117,115,993
Ensembl chr 5:117,091,680...117,116,113
JBrowse link
G Tbl1x transducin (beta)-like 1 X-linked IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:77,509,549...77,662,722
Ensembl chr  X:77,511,013...77,662,983
JBrowse link
G Tbl1xr1 transducin (beta)-like 1X-linked receptor 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 3:22,076,253...22,216,594
Ensembl chr 3:22,076,652...22,216,594
JBrowse link
G Trerf1 transcriptional regulating factor 1 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr17:47,140,942...47,362,325
Ensembl chr17:47,140,875...47,361,958
JBrowse link
G Zfp541 zinc finger protein 541 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 7:16,061,775...16,096,340
Ensembl chr 7:16,061,814...16,096,334
JBrowse link
histone H3 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 ISO RGD PMID:17079677 RGD:5688291 NCBI chr12:101,918,901...101,959,121
Ensembl chr12:101,918,901...101,958,246
JBrowse link
G Elk4 ELK4, member of ETS oncogene family ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:132,007,577...132,026,448
Ensembl chr 1:132,007,607...132,032,612
JBrowse link
G Hdac1 histone deacetylase 1 IDA
IBA
ISO
(MGI:MGI:5567917|PMID:15226430)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
MGI
RGD
PMID:15226430, PMID:21873635 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:4834177, MGI:MGI:5567917, MGI:MGI:6201960 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hdac2 histone deacetylase 2 IDA
IBA
ISO
(MGI:MGI:5567917|PMID:15226430)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
RGD
PMID:15226430, PMID:21873635 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:5567917, MGI:MGI:6201960 NCBI chr10:36,974,297...37,001,889
Ensembl chr10:36,974,544...37,001,889
JBrowse link
G Hdac3 histone deacetylase 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr18:37,936,971...37,955,015
Ensembl chr18:37,935,844...37,955,016
JBrowse link
G Hdac4 histone deacetylase 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:91,928,779...92,195,702
Ensembl chr 1:91,928,779...92,195,699
JBrowse link
G Hdac8 histone deacetylase 8 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:102,284,638...102,505,381
Ensembl chr  X:102,284,639...102,505,359
JBrowse link
G Hdac9 histone deacetylase 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:34,047,580...34,917,095
Ensembl chr12:34,047,580...34,917,095
JBrowse link
G Per1 period circadian clock 1 IMP (MGI:MGI:5014424|PMID:21680841) UniProtKB PMID:21680841 MGI:MGI:5014424 NCBI chr11:69,095,108...69,109,965
Ensembl chr11:69,095,217...69,109,960
JBrowse link
G Per2 period circadian clock 2 IMP (MGI:MGI:5014424|PMID:21680841) UniProtKB PMID:21680841 MGI:MGI:5014424 NCBI chr 1:91,415,977...91,459,351
Ensembl chr 1:91,415,982...91,459,324
JBrowse link
G Sfpq splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) IMP (MGI:MGI:5014424|PMID:21680841) UniProtKB PMID:21680841 MGI:MGI:5014424 NCBI chr 4:127,020,716...127,051,101
Ensembl chr 4:127,021,324...127,037,013
JBrowse link
G Sirt1 sirtuin 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) RGD
GO_Central
MGI
PMID:21873635 GO_REF:0000096, MGI:MGI:4417868, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
G Sirt2 sirtuin 2 IMP
ISO
(MGI:MGI:5502462|PMID:23908241) UniProtKB
MGI
PMID:23908241 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5502462 NCBI chr 7:28,766,752...28,788,665
Ensembl chr 7:28,766,735...28,788,661
JBrowse link
G Sirt6 sirtuin 6 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:81,621,787...81,627,792
Ensembl chr10:81,621,785...81,627,797
JBrowse link
G Sirt7 sirtuin 7 ISO
IBA
IMP
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:5789069|PMID:27225932), (MGI:MGI:6377981|PMID:31226208), (MGI:MGI:6378020|PMID:31256246)
MGI
GO_Central
UniProt
PMID:21873635, PMID:27225932, PMID:31226208, PMID:31256246 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5789069, MGI:MGI:6201960, MGI:MGI:6377981, MGI:MGI:6378020 NCBI chr11:120,618,371...120,625,014
Ensembl chr11:120,618,372...120,625,240
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:65,042,591...65,116,061
Ensembl chr 6:65,042,583...65,116,061
JBrowse link
histone H3-K9 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt6 sirtuin 6 IBA (MGI:MGI:6201960|PMID:21873635) GOC PMID:21873635 MGI:MGI:6201960 NCBI chr10:81,621,787...81,627,792
Ensembl chr10:81,621,785...81,627,797
JBrowse link
histone H4 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A IDA (MGI:MGI:3653583|PMID:16678107) MGI PMID:16678107 MGI:MGI:3653583 NCBI chr10:128,091,370...128,129,303
Ensembl chr10:128,091,577...128,129,303
JBrowse link
G Hdac1 histone deacetylase 1 IDA
IBA
ISO
(MGI:MGI:5567917|PMID:15226430)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
MGI
PMID:15226430, PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5567917, MGI:MGI:6201960 NCBI chr 4:129,516,104...129,542,646
Ensembl chr 4:129,516,104...129,542,713
JBrowse link
G Hdac2 histone deacetylase 2 IDA
IBA
(MGI:MGI:5567917|PMID:15226430)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
GO_Central
PMID:15226430, PMID:21873635 MGI:MGI:5567917, MGI:MGI:6201960 NCBI chr10:36,974,297...37,001,889
Ensembl chr10:36,974,544...37,001,889
JBrowse link
G Hdac3 histone deacetylase 3 IDA
IBA
(MGI:MGI:5902654|PMID:27798112)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:27798112 MGI:MGI:5902654, MGI:MGI:6201960 NCBI chr18:37,936,971...37,955,015
Ensembl chr18:37,935,844...37,955,016
JBrowse link
G Hdac4 histone deacetylase 4 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 1:91,928,779...92,195,702
Ensembl chr 1:91,928,779...92,195,699
JBrowse link
G Hdac8 histone deacetylase 8 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:102,284,638...102,505,381
Ensembl chr  X:102,284,639...102,505,359
JBrowse link
G Hdac9 histone deacetylase 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:34,047,580...34,917,095
Ensembl chr12:34,047,580...34,917,095
JBrowse link
G Rcor1 REST corepressor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:111,039,367...111,115,902
Ensembl chr12:111,039,351...111,115,901
JBrowse link
G Rest RE1-silencing transcription factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:77,265,494...77,286,432
Ensembl chr 5:77,265,491...77,286,432
JBrowse link
G Sirt2 sirtuin 2 IMP
ISO
(MGI:MGI:5567889|PMID:24334550) UniProtKB
MGI
PMID:24334550 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5567889 NCBI chr 7:28,766,752...28,788,665
Ensembl chr 7:28,766,735...28,788,661
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 6:65,042,591...65,116,061
Ensembl chr 6:65,042,583...65,116,061
JBrowse link
histone H4-K12 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac3 histone deacetylase 3 IDA (MGI:MGI:5902654|PMID:27798112) MGI PMID:27798112 MGI:MGI:5902654 NCBI chr18:37,936,971...37,955,015
Ensembl chr18:37,935,844...37,955,016
JBrowse link
histone H4-K16 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac9 histone deacetylase 9 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:34,047,580...34,917,095
Ensembl chr12:34,047,580...34,917,095
JBrowse link
negative regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm5a lysine (K)-specific demethylase 5A IDA (MGI:MGI:5288521|PMID:21960634) UniProtKB PMID:21960634 MGI:MGI:5288521 NCBI chr 6:120,364,099...120,444,574
Ensembl chr 6:120,364,124...120,444,574
JBrowse link
G Sphk2 sphingosine kinase 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:45,709,463...45,718,002
Ensembl chr 7:45,709,467...45,718,002
JBrowse link
negative regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:7,579,676...7,595,243
Ensembl chr  X:7,573,644...7,595,245
JBrowse link
G Prmt6 protein arginine N-methyltransferase 6 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 3:110,246,104...110,250,999
Ensembl chr 3:110,246,109...110,250,998
JBrowse link
G Sphk2 sphingosine kinase 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:45,709,463...45,718,002
Ensembl chr 7:45,709,467...45,718,002
JBrowse link
positive regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BC004004 cDNA sequence BC004004 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr17:29,268,788...29,302,888
Ensembl chr17:29,268,788...29,314,065
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 IMP (MGI:MGI:5902654|PMID:27798112) MGI PMID:27798112 MGI:MGI:5902654 NCBI chr15:91,672,791...91,816,124
Ensembl chr15:91,673,175...91,816,120
JBrowse link
G Pink1 PTEN induced putative kinase 1 IMP (MGI:MGI:5617128|PMID:25305081) MGI PMID:25305081 MGI:MGI:5617128 NCBI chr 4:138,313,409...138,326,296
Ensembl chr 4:138,313,409...138,326,307
JBrowse link
G Prkd1 protein kinase D1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr12:50,341,226...50,649,271
Ensembl chr12:50,341,231...50,649,098
JBrowse link
G Prkd2 protein kinase D2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:16,842,902...16,870,461
Ensembl chr 7:16,842,902...16,870,464
JBrowse link
G Vegfa vascular endothelial growth factor A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
positive regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A kinase (PRKA) anchor protein 8 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:32,303,672...32,321,238
Ensembl chr17:32,303,672...32,321,238
JBrowse link
G Akap8l A kinase (PRKA) anchor protein 8-like ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:32,321,424...32,350,616
Ensembl chr17:32,321,424...32,350,607
JBrowse link
G Bcl6 B cell leukemia/lymphoma 6 IGI (MGI:MGI:5493185|PMID:23160044) MGI PMID:23160044 MGI:MGI:5493185 NCBI chr16:23,965,050...23,988,866
Ensembl chr16:23,965,052...23,988,852
JBrowse link
G Ctbp1 C-terminal binding protein 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:33,247,723...33,275,004
Ensembl chr 5:33,247,723...33,274,994
JBrowse link
G Ing2 inhibitor of growth family, member 2 IMP (MGI:MGI:4867787|PMID:21124965) BHF-UCL PMID:21124965 MGI:MGI:4867787 NCBI chr 8:47,667,178...47,675,159
Ensembl chr 8:47,667,178...47,675,556
JBrowse link
G Jdp2 Jun dimerization protein 2 IGI (MGI:MGI:3807603|PMID:17464331) MGI PMID:17464331 MGI:MGI:3807603 NCBI chr12:85,598,656...85,639,878
Ensembl chr12:85,599,027...85,639,878
JBrowse link
G Lpin1 lipin 1 IMP (MGI:MGI:4819323|PMID:20385772) MGI PMID:20385772 MGI:MGI:4819323 NCBI chr12:16,535,669...16,653,903
Ensembl chr12:16,535,669...16,646,966
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 IDA (MGI:MGI:3821398|PMID:19037247) MGI PMID:19037247 MGI:MGI:3821398 NCBI chr11:62,315,663...62,457,414
Ensembl chr11:62,316,426...62,458,541
JBrowse link
G Nipbl NIPBL cohesin loading factor ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
G Pml promyelocytic leukemia ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:58,217,179...58,249,796
Ensembl chr 9:58,218,076...58,249,786
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:3,995,942...4,019,663
Ensembl chr 4:3,995,936...4,019,663
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 IDA (MGI:MGI:3760208|PMID:17636037) MGI PMID:17636037 MGI:MGI:3760208 NCBI chr11:60,199,084...60,224,186
Ensembl chr11:60,199,089...60,222,581
JBrowse link
G Tgfb1 transforming growth factor, beta 1 IDA (MGI:MGI:3528807|PMID:15657445), (MGI:MGI:3584056|PMID:15990875) MGI PMID:15657445, PMID:15990875 MGI:MGI:3528807, MGI:MGI:3584056 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Trp53 transformation related protein 53 IDA (MGI:MGI:3528807|PMID:15657445) MGI PMID:15657445 MGI:MGI:3528807 NCBI chr11:69,580,348...69,591,873
Ensembl chr11:69,580,359...69,591,873
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B IMP (MGI:MGI:5446998|PMID:22730529) UniProtKB PMID:22730529 MGI:MGI:5446998 NCBI chr 3:89,377,644...89,393,673
Ensembl chr 3:89,377,644...89,394,776
JBrowse link
regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jdp2 Jun dimerization protein 2 IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr12:85,598,656...85,639,878
Ensembl chr12:85,599,027...85,639,878
JBrowse link
G Tada2a transcriptional adaptor 2A IGI (MGI:MGI:4462728|PMID:20562830) MGI PMID:20562830 MGI:MGI:4462728 NCBI chr11:84,078,920...84,129,644
Ensembl chr11:84,078,920...84,129,600
JBrowse link
G Tada3 transcriptional adaptor 3 IGI (MGI:MGI:4462728|PMID:20562830) MGI PMID:20562830 MGI:MGI:4462728 NCBI chr 6:113,366,633...113,377,838
Ensembl chr 6:113,366,025...113,377,883
JBrowse link
G Tcf21 transcription factor 21 IC (MGI:MGI:3588448|PMID:15919722) BHF-UCL PMID:15919722 MGI:MGI:3588448 NCBI chr10:22,817,263...22,820,143
Ensembl chr10:22,817,281...22,820,174
JBrowse link
G Znhit1 zinc finger, HIT domain containing 1 IDA
IBA
(MGI:MGI:3851280|PMID:19501046)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:19501046, PMID:21873635 MGI:MGI:3851280, MGI:MGI:6201960 NCBI chr 5:136,982,194...136,987,959
Ensembl chr 5:136,982,164...136,988,021
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23360
    cellular process 17360
      cellular component organization or biogenesis 6385
        cellular component organization 6197
          chromatin organization 791
            covalent chromatin modification 479
              histone modification 465
                histone deacetylation 80
                  histone H3 deacetylation + 16
                  histone H4 deacetylation + 11
                  histone deacetylation at centromere + 0
                  negative regulation of histone deacetylation + 4
                  positive regulation of histone deacetylation + 21
                  regulation of histone deacetylation + 29
Path 2
Term Annotations click to browse term
  biological_process 23360
    metabolic process 11269
      organic substance metabolic process 10739
        macromolecule metabolic process 9262
          macromolecule modification 3848
            protein modification process 3656
              cellular protein modification process 3656
                protein deacylation 114
                  protein deacetylation 104
                    histone deacetylation 80
                      histone H3 deacetylation + 16
                      histone H4 deacetylation + 11
                      histone deacetylation at centromere + 0
                      negative regulation of histone deacetylation + 4
                      positive regulation of histone deacetylation + 21
                      regulation of histone deacetylation + 29
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.