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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deacetylation
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Accession:GO:0016575 term browser browse the term
Definition:The modification of histones by removal of acetyl groups.


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histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A ISO (MGI:MGI:3852313|PMID:12198165) RGD PMID:12198165 MGI:MGI:3852313 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Brms1 BRMS1, transcriptional repressor and anoikis regulator IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,325,352...220,334,616 JBrowse link
G Brms1l BRMS1 like transcriptional repressor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:76,675,399...76,708,261
NCBI chr 6:76,743,243...76,753,950
Ensembl chr 6:76,675,418...76,708,261
Ensembl chr 6:76,675,418...76,708,261
JBrowse link
G Hdac1 histone deacetylase 1 ISO (PMID:19182791) RGD PMID:19182791 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac10 histone deacetylase 10 ISO (PMID:11739383), (PMID:11861901) RGD PMID:11739383, PMID:11861901 NCBI chr 7:130,102,335...130,109,036
Ensembl chr 7:130,102,347...130,107,437
JBrowse link
G Hdac11 histone deacetylase 11 ISO (PMID:11948178) RGD PMID:11948178 NCBI chr 4:122,781,095...122,798,355
Ensembl chr 4:122,781,095...122,798,353
JBrowse link
G Hdac2 histone deacetylase 2 ISO (PMID:19372552)
MGI:MGI:1916782 (MGI:MGI:3712793|PMID:12975471)
RGD PMID:12975471, PMID:19372552 MGI:MGI:3712793 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hdac3 histone deacetylase 3 ISO MGI:MGI:1932093 (MGI:MGI:3580040|PMID:15832170), (MGI:MGI:3807603|PMID:17464331) RGD PMID:15832170, PMID:17464331 MGI:MGI:3580040, MGI:MGI:3807603 NCBI chr18:31,073,057...31,094,347
Ensembl chr18:31,073,058...31,094,303
JBrowse link
G Hdac4 histone deacetylase 4 ISO (PMID:10869435), (PMID:18850004) RGD PMID:10869435, PMID:18850004 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hdac5 histone deacetylase 5 NAS
ISO
(PMID:10869435) RGD PMID:10869435, PMID:12896970 RGD:1304416 NCBI chr10:90,140,183...90,169,853
Ensembl chr10:90,140,183...90,151,042
JBrowse link
G Hdac6 histone deacetylase 6 ISO (PMID:10220385)
(MGI:MGI:5605128|PMID:24882211)
RGD PMID:10220385, PMID:24882211 MGI:MGI:5605128 NCBI chr  X:15,295,372...15,316,673
Ensembl chr  X:15,295,473...15,316,671
JBrowse link
G Hdac9 histone deacetylase 9 ISO (PMID:11535832) RGD PMID:11535832 NCBI chr 6:53,487,367...54,358,694
Ensembl chr 6:53,488,883...54,059,119
JBrowse link
G Hopx HOP homeobox ISO MGI:MGI:1097691 (MGI:MGI:3712793|PMID:12975471) RGD PMID:12975471 MGI:MGI:3712793 NCBI chr14:33,354,803...33,362,547
Ensembl chr14:33,354,807...33,362,551
JBrowse link
G LOC102552640 REST corepressor 2-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:19,603,294...19,609,393
Ensembl chr15:19,603,288...19,609,382
JBrowse link
G LOC108348098 breast cancer metastasis-suppressor 1 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,418,455...220,427,785
Ensembl chr 1:220,325,352...220,334,615
JBrowse link
G Mideas mitotic deacetylase associated SANT domain protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:107,633,762...107,703,462
Ensembl chr 6:107,633,716...107,678,156
JBrowse link
G Mier1 MIER1 transcriptional regulator ISO
IBA
(PMID:28046085)
PMID:21873635
RGD PMID:28046085, PMID:21873635 RGD:13792537 NCBI chr 5:122,642,065...122,693,642
Ensembl chr 5:122,641,885...122,693,635
JBrowse link
G Mier2 MIER family member 2 ISO
IBA
(PMID:28046085)
PMID:21873635
RGD PMID:28046085, PMID:21873635 RGD:13792537 NCBI chr 7:13,039,759...13,055,632
Ensembl chr 7:13,039,781...13,055,632
JBrowse link
G Mier3 MIER family member 3 NOT ISO (PMID:28046085) RGD PMID:28046085 NCBI chr 2:43,266,301...43,295,175
Ensembl chr 2:43,266,739...43,294,889
JBrowse link
G Morf4l1 mortality factor 4 like 1 ISO
IBA
ISS
(PMID:14966270)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:14966270, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 8:97,473,454...97,494,974
Ensembl chr 8:97,474,092...97,494,834
JBrowse link
G Morf4l2 mortality factor 4 like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:107,394,468...107,405,564
Ensembl chr  X:107,394,486...107,405,564
JBrowse link
G Msl3 MSL complex subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:27,015,826...27,033,562
Ensembl chr  X:27,015,884...27,033,555
JBrowse link
G Msl3l2 male-specific lethal 3-like 2 (Drosophila) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:37,580,002...37,590,015
Ensembl chr20:37,587,687...37,589,198
JBrowse link
G Mta1 metastasis associated 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:137,911,302...137,950,066
Ensembl chr 6:137,924,293...137,950,075
JBrowse link
G Mta2 metastasis associated 1 family, member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:225,140,863...225,149,584
Ensembl chr 1:225,140,863...225,149,583
JBrowse link
G Mta3 metastasis associated 1 family, member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:6,904,449...7,036,929
Ensembl chr 6:6,908,684...7,031,828
JBrowse link
G Phb prohibitin ISO (PMID:12466959) RGD PMID:12466959 NCBI chr10:83,476,107...83,488,878
Ensembl chr10:83,476,107...83,488,878
JBrowse link
G Prdm5 PR/SET domain 5 ISO (PMID:17636019) RGD PMID:17636019 NCBI chr 4:96,659,062...96,810,816
Ensembl chr 4:96,659,084...96,812,263
JBrowse link
G Rbm14 RNA binding motif protein 14 ISO UniProtKB:Q92793 (PMID:11443112) RGD PMID:11443112 NCBI chr 1:220,048,740...220,067,124
Ensembl chr 1:220,048,873...220,067,124
JBrowse link
G Rcor1 REST corepressor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:135,475,470...135,552,155
Ensembl chr 6:135,513,650...135,548,201
Ensembl chr 6:135,513,650...135,548,201
JBrowse link
G Rcor2 REST corepressor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:222,513,970...222,525,356
Ensembl chr 1:222,519,615...222,524,779
JBrowse link
G Rcor2l1 REST corepressor 2-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:222,519,615...222,524,779
Ensembl chr15:222,519,615...222,524,779
JBrowse link
G Rcor3 REST corepressor 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:110,822,149...110,864,469
Ensembl chr13:110,822,150...110,864,469
JBrowse link
G Sin3a SIN3 transcription regulator family member A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:61,748,590...61,803,314
Ensembl chr 8:61,762,768...61,803,099
JBrowse link
G Sin3b SIN3 transcription regulator family member B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:18,842,456...18,860,086
Ensembl chr16:18,842,456...18,860,086
JBrowse link
G Sirt1 sirtuin 1 ISO (PMID:12006491), (PMID:15469825), (PMID:16079181), (PMID:17172643)
MGI:MGI:107187 (MGI:MGI:1891853|PMID:10693811), (MGI:MGI:4887284|PMID:20972425), (MGI:MGI:5493185|PMID:23160044)
RGD PMID:10693811, PMID:12006491, PMID:15469825, PMID:16079181, PMID:17172643, PMID:20972425, PMID:23160044 MGI:MGI:1891853, MGI:MGI:4887284, MGI:MGI:5493185 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Sirt2 sirtuin 2 NOT ISO MGI:MGI:1915724|MGI:MGI:2144471 (MGI:MGI:4462728|PMID:20562830)
(PMID:24177535)
RGD PMID:20562830, PMID:24177535 MGI:MGI:4462728 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component ISO
IBA
(PMID:21239494)
PMID:21873635
RGD PMID:21239494, PMID:21873635 RGD:13792537 NCBI chr12:45,199,012...45,221,507
Ensembl chr12:45,199,577...45,221,512
JBrowse link
G Tbl1x transducin (beta)-like 1 X-linked IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:44,959,883...44,988,551
Ensembl chr  X:44,830,849...44,988,551
JBrowse link
G Tbl1xr1 TBL1X receptor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:107,221,913...107,359,229
Ensembl chr 2:107,233,054...107,359,229
JBrowse link
G Trerf1 transcriptional regulating factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:15,653,230...15,881,695
Ensembl chr 9:15,655,735...15,700,312
JBrowse link
G Zfp541 zinc finger protein 541 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:77,957,188...77,993,816
Ensembl chr 1:77,967,755...77,992,027
JBrowse link
histone H3 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn3 ataxin 3 IEP RGD PMID:17079677 RGD:5688291 NCBI chr 6:125,817,420...125,853,461
Ensembl chr 6:125,819,640...125,853,461
JBrowse link
G Elk4 ETS transcription factor ELK4 ISO (PMID:22722849) RGD PMID:22722849 NCBI chr13:48,788,262...48,813,267
Ensembl chr13:48,790,509...48,813,260
JBrowse link
G Hdac1 histone deacetylase 1 IMP
IBA
ISO
PMID:21873635
(MGI:MGI:5567917|PMID:15226430)
(PMID:12590135)
RGD PMID:12590135, PMID:15226430, PMID:19765194, PMID:21873635 MGI:MGI:5567917, RGD:2316171, RGD:13792537 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac1l histone deacetylase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:84,893,145...84,894,599
Ensembl chr 9:84,893,145...84,894,599
JBrowse link
G Hdac2 histone deacetylase 2 IMP
IBA
ISO
PMID:21873635
(MGI:MGI:5567917|PMID:15226430)
RGD PMID:15226430, PMID:24441681, PMID:21873635 MGI:MGI:5567917, RGD:9590255, RGD:13792537 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hdac3 histone deacetylase 3 IEP
IBA
IEA
PMID:21873635
GO_REF:0000108
GOC PMID:17079677, PMID:21873635 GO_REF:0000108, RGD:5688291, RGD:13792537 NCBI chr18:31,073,057...31,094,347
Ensembl chr18:31,073,058...31,094,303
JBrowse link
G Hdac4 histone deacetylase 4 ISO (PMID:12590135) RGD PMID:12590135 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hdac5 histone deacetylase 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:90,140,183...90,169,853
Ensembl chr10:90,140,183...90,151,042
JBrowse link
G Hdac7 histone deacetylase 7 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:139,280,396...139,319,108
Ensembl chr 7:139,281,187...139,318,455
JBrowse link
G Hdac8 histone deacetylase 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:72,163,777...72,370,058
Ensembl chr  X:72,163,777...72,370,044
JBrowse link
G Hdac9 histone deacetylase 9 ISO (PMID:12590135) RGD PMID:12590135 NCBI chr 6:53,487,367...54,358,694
Ensembl chr 6:53,488,883...54,059,119
JBrowse link
G Per1 period circadian regulator 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5014424|PMID:21680841)
Ensembl
UniProt
RGD
PMID:21680841 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5014424 NCBI chr10:55,681,761...55,696,557
Ensembl chr10:55,687,050...55,695,994
JBrowse link
G Per2 period circadian regulator 2 ISO
ISS
(MGI:MGI:5014424|PMID:21680841)
GO_REF:0000024
RGD
UniProt
PMID:21680841 GO_REF:0000024, MGI:MGI:5014424 NCBI chr 9:98,555,154...98,597,362
Ensembl chr 9:98,555,169...98,597,359
JBrowse link
G Sfpq splicing factor proline and glutamine rich ISO (MGI:MGI:5014424|PMID:21680841) RGD PMID:21680841 MGI:MGI:5014424 NCBI chr 5:145,079,803...145,088,517
Ensembl chr 5:145,079,803...145,088,498
JBrowse link
G Sirt1 sirtuin 1 IMP
IBA
ISO
PMID:21873635
(PMID:17505061), (PMID:20027304)
RGD PMID:17505061, PMID:20027304, PMID:20089851, PMID:21873635, PMID:21873635 RGD:2316169, RGD:13792537, RGD:13792537 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Sirt2 sirtuin 2 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5502462|PMID:23908241)
(PMID:23908241)
Ensembl
UniProt
RGD
PMID:23908241 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5502462 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Sirt3 sirtuin 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:213,613,502...213,636,061
Ensembl chr 1:213,613,513...213,635,546
JBrowse link
G Sirt6 sirtuin 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
G Sirt7 sirtuin 7 ISS
ISO
IBA
GO_REF:0000024
(MGI:MGI:5789069|PMID:27225932), (MGI:MGI:6377981|PMID:31226208), (MGI:MGI:6378020|PMID:31256246)
PMID:21873635
(PMID:22722849), (PMID:26907567), (PMID:28655758), (PMID:30420520), (PMID:30653310)
UniProt
RGD
PMID:22722849, PMID:26907567, PMID:27225932, PMID:28655758, PMID:30420520, PMID:30653310, PMID:31226208, PMID:31256246, PMID:21873635 GO_REF:0000024, MGI:MGI:5789069, MGI:MGI:6377981, MGI:MGI:6378020, RGD:13792537 NCBI chr10:109,796,046...109,802,821
Ensembl chr10:109,796,020...109,802,739
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` ISO
ISS
(PMID:21549307)
GO_REF:0000024
RGD
UniProt
PMID:21549307 GO_REF:0000024 NCBI chr 4:95,884,020...95,945,248
Ensembl chr 4:95,884,743...95,945,248
JBrowse link
histone H3-K9 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sirt1 sirtuin 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:26,831,971...26,851,587
Ensembl chr20:26,833,357...26,852,199
JBrowse link
G Sirt6 sirtuin 6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:10,937,622...10,943,048
Ensembl chr 7:10,937,599...10,943,063
JBrowse link
histone H4 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A ISO (MGI:MGI:3653583|PMID:16678107) RGD PMID:16678107 MGI:MGI:3653583 NCBI chr 7:2,518,267...2,548,840
Ensembl chr 7:2,529,077...2,547,062
JBrowse link
G Hdac1 histone deacetylase 1 ISO
IBA
ISS
(PMID:12590135)
PMID:21873635
GO_REF:0000024
(MGI:MGI:5567917|PMID:15226430)
RGD
UniProt
PMID:12590135, PMID:15226430, PMID:21873635 GO_REF:0000024, MGI:MGI:5567917, RGD:13792537 NCBI chr 5:147,716,664...147,743,723
Ensembl chr 5:147,716,664...147,743,723
JBrowse link
G Hdac1l histone deacetylase 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:84,893,145...84,894,599
Ensembl chr 9:84,893,145...84,894,599
JBrowse link
G Hdac2 histone deacetylase 2 ISO
IBA
(MGI:MGI:5567917|PMID:15226430)
PMID:21873635
RGD PMID:15226430, PMID:21873635 MGI:MGI:5567917, RGD:13792537 NCBI chr20:43,084,870...43,108,198
Ensembl chr20:43,084,870...43,108,198
JBrowse link
G Hdac3 histone deacetylase 3 ISO
IBA
(MGI:MGI:5902654|PMID:27798112)
PMID:21873635
RGD PMID:27798112, PMID:21873635 MGI:MGI:5902654, RGD:13792537 NCBI chr18:31,073,057...31,094,347
Ensembl chr18:31,073,058...31,094,303
JBrowse link
G Hdac4 histone deacetylase 4 ISO (PMID:12590135) RGD PMID:12590135 NCBI chr 9:99,052,945...99,299,715
Ensembl chr 9:99,057,089...99,299,715
JBrowse link
G Hdac8 histone deacetylase 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:72,163,777...72,370,058
Ensembl chr  X:72,163,777...72,370,044
JBrowse link
G Hdac9 histone deacetylase 9 ISO (PMID:12590135) RGD PMID:12590135 NCBI chr 6:53,487,367...54,358,694
Ensembl chr 6:53,488,883...54,059,119
JBrowse link
G Rcor1 REST corepressor 1 ISO (PMID:17555596) RGD PMID:17555596 NCBI chr 6:135,475,470...135,552,155
Ensembl chr 6:135,513,650...135,548,201
Ensembl chr 6:135,513,650...135,548,201
JBrowse link
G Rest RE1-silencing transcription factor ISO
ISS
(PMID:17555596)
GO_REF:0000024
RGD
UniProt
PMID:17555596 GO_REF:0000024 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141
JBrowse link
G Sirt2 sirtuin 2 IEA
ISO
ISS
GO_REF:0000107
(PMID:16648462), (PMID:17488717)
GO_REF:0000024
(MGI:MGI:5567889|PMID:24334550)
Ensembl
RGD
UniProt
PMID:16648462, PMID:17488717, PMID:24334550 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5567889 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Sirt7 sirtuin 7 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:109,796,046...109,802,821
Ensembl chr10:109,796,020...109,802,739
JBrowse link
G Smarcad1 SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1` ISO
ISS
(PMID:21549307)
GO_REF:0000024
RGD
UniProt
PMID:21549307 GO_REF:0000024 NCBI chr 4:95,884,020...95,945,248
Ensembl chr 4:95,884,743...95,945,248
JBrowse link
histone H4-K12 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac3 histone deacetylase 3 ISO (MGI:MGI:5902654|PMID:27798112) RGD PMID:27798112 MGI:MGI:5902654 NCBI chr18:31,073,057...31,094,347
Ensembl chr18:31,073,058...31,094,303
JBrowse link
histone H4-K16 deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdac9 histone deacetylase 9 ISO (PMID:28855441) RGD PMID:28855441 NCBI chr 6:53,487,367...54,358,694
Ensembl chr 6:53,488,883...54,059,119
JBrowse link
negative regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm5a lysine demethylase 5A ISO (MGI:MGI:5288521|PMID:21960634) RGD PMID:21960634 MGI:MGI:5288521 NCBI chr 4:152,892,388...152,972,196
Ensembl chr 4:152,892,388...152,972,201
JBrowse link
G Sphk2 sphingosine kinase 2 ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
negative regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp3 forkhead box P3 ISO UniProtKB:P56524 (PMID:19276356) RGD PMID:19276356 NCBI chr  X:15,753,175...15,768,648
Ensembl chr  X:15,753,175...15,768,522
JBrowse link
G LOC100910107 ubiquitin carboxyl-terminal hydrolase DUB-1-like ISO (PMID:21239494) RGD PMID:21239494 NCBI chr 1:169,720,247...169,721,788
Ensembl chr 1:169,720,253...169,721,758
JBrowse link
G Prmt6 protein arginine methyltransferase 6 ISO (PMID:30420520) RGD PMID:30420520 NCBI chr 2:213,173,403...213,180,721
Ensembl chr 2:213,173,403...213,178,632
Ensembl chr 2:213,173,403...213,178,632
JBrowse link
G Ski SKI proto-oncogene IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Sphk2 sphingosine kinase 2 ISO (PMID:19729656) RGD PMID:19729656 NCBI chr 1:101,692,972...101,700,604
Ensembl chr 1:101,692,973...101,697,277
JBrowse link
G Ucn urocortin IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:26,602,144...26,602,974
Ensembl chr 6:26,602,144...26,602,974
JBrowse link
positive regulation of histone deacetylase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 ISO (MGI:MGI:5902654|PMID:27798112) RGD PMID:27798112 MGI:MGI:5902654 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Pink1 PTEN induced kinase 1 ISO (MGI:MGI:5617128|PMID:25305081) RGD PMID:25305081 MGI:MGI:5617128 NCBI chr 5:156,677,146...156,689,258
Ensembl chr 5:156,677,146...156,689,415
JBrowse link
G Prkd1 protein kinase D1 ISO UniProtKB:Q9BZL6 (PMID:20497126) RGD PMID:20497126 NCBI chr 6:71,035,017...71,349,531
Ensembl chr 6:71,035,332...71,349,249
JBrowse link
G Prkd2 protein kinase D2 ISO UniProtKB:Q15139 (PMID:20497126) RGD PMID:20497126 NCBI chr 1:78,767,911...78,796,223
Ensembl chr 1:78,767,911...78,796,231
JBrowse link
G RGD735065 similar to GI:13385412-like protein splice form I ISO
IBA
ISS
(PMID:23460338)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23460338, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr20:6,869,870...6,910,022
Ensembl chr20:6,869,767...6,905,194
JBrowse link
G Vegfa vascular endothelial growth factor A ISO (PMID:20497126) RGD PMID:20497126 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
positive regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akap8 A-kinase anchoring protein 8 ISO (PMID:16980585) RGD PMID:16980585 NCBI chr 7:14,323,298...14,339,953
Ensembl chr 7:14,324,104...14,351,918
JBrowse link
G Akap8l A-kinase anchoring protein 8 like ISO (PMID:16980585) RGD PMID:16980585 NCBI chr 7:14,340,168...14,369,835
Ensembl chr 7:14,340,170...14,369,821
JBrowse link
G Bcl6 BCL6, transcription repressor ISO MGI:MGI:2135607 (MGI:MGI:5493185|PMID:23160044) RGD PMID:23160044 MGI:MGI:5493185 NCBI chr11:80,255,790...80,279,075
Ensembl chr11:80,255,790...80,279,075
JBrowse link
G Ctbp1 C-terminal binding protein 1 ISO
IEA
(PMID:21102443)
GO_REF:0000107
RGD
Ensembl
PMID:21102443 GO_REF:0000107 NCBI chr14:82,762,109...82,789,350
Ensembl chr14:82,762,190...82,789,319
JBrowse link
G Ing2 inhibitor of growth family, member 2 ISO (MGI:MGI:4867787|PMID:21124965) RGD PMID:21124965 MGI:MGI:4867787 NCBI chr16:47,714,756...47,725,836
Ensembl chr16:47,717,951...47,725,836
JBrowse link
G Jdp2 Jun dimerization protein 2 ISO MGI:MGI:1343091 (MGI:MGI:3807603|PMID:17464331) RGD PMID:17464331 MGI:MGI:3807603 NCBI chr 6:109,464,910...109,505,591
Ensembl chr 6:109,466,060...109,505,161
JBrowse link
G Lpin1 lipin 1 ISO (MGI:MGI:4819323|PMID:20385772) RGD PMID:20385772 MGI:MGI:4819323 NCBI chr 6:41,796,214...41,905,149
Ensembl chr 6:41,799,749...41,870,046
JBrowse link
G Ncor1 nuclear receptor co-repressor 1 ISO (MGI:MGI:3821398|PMID:19037247) RGD PMID:19037247 MGI:MGI:3821398 NCBI chr10:48,629,121...48,772,890
Ensembl chr10:48,629,121...48,772,890
JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:18854353) RGD PMID:18854353 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820
JBrowse link
G Pml PML nuclear body scaffold ISO (PMID:11259576) RGD PMID:11259576 NCBI chr 8:63,002,515...63,034,310
Ensembl chr 8:63,004,870...63,034,226
JBrowse link
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 ISO (PMID:16691198) RGD PMID:16691198 NCBI chr 5:16,904,926...16,930,111
Ensembl chr 5:16,904,926...16,930,075
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 ISO (MGI:MGI:3760208|PMID:17636037) RGD PMID:17636037 MGI:MGI:3760208 NCBI chr10:46,570,996...46,593,021
Ensembl chr10:46,570,996...46,593,009
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (MGI:MGI:3528807|PMID:15657445), (MGI:MGI:3584056|PMID:15990875) RGD PMID:15657445, PMID:15990875 MGI:MGI:3528807, MGI:MGI:3584056 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tp53 tumor protein p53 ISO (MGI:MGI:3528807|PMID:15657445) RGD PMID:15657445 MGI:MGI:3528807 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Zbtb7b zinc finger and BTB domain containing 7B ISO (MGI:MGI:5446998|PMID:22730529) RGD PMID:22730529 MGI:MGI:5446998 NCBI chr 2:188,704,989...188,719,674
Ensembl chr 2:188,704,687...188,718,704
JBrowse link
regulation of histone deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk8 mitogen-activated protein kinase 8 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:9,620,854...9,709,342
Ensembl chr16:9,625,177...9,709,347
JBrowse link
G Tada2a transcriptional adaptor 2A ISO MGI:MGI:1927664 (MGI:MGI:4462728|PMID:20562830) RGD PMID:20562830 MGI:MGI:4462728 NCBI chr10:71,393,701...71,441,435
Ensembl chr10:71,393,692...71,441,389
JBrowse link
G Tada3 transcriptional adaptor 3 ISO MGI:MGI:1927664 (MGI:MGI:4462728|PMID:20562830) RGD PMID:20562830 MGI:MGI:4462728 NCBI chr 4:145,318,417...145,330,291
Ensembl chr 4:145,318,435...145,329,878
JBrowse link
G Znhit1 zinc finger, HIT-type containing 1 ISO
IBA
(MGI:MGI:3851280|PMID:19501046)
PMID:21873635
RGD PMID:19501046, PMID:21873635 MGI:MGI:3851280, RGD:13792537 NCBI chr12:22,726,643...22,732,917
Ensembl chr12:22,726,643...22,732,943
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    cellular process 18788
      cellular component organization or biogenesis 6766
        cellular component organization 6510
          chromatin organization 847
            covalent chromatin modification 513
              histone modification 498
                histone deacetylation 87
                  histone H3 deacetylation + 20
                  histone H4 deacetylation + 13
                  histone deacetylation at centromere + 0
                  negative regulation of histone deacetylation + 7
                  positive regulation of histone deacetylation + 21
                  regulation of histone deacetylation + 32
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      organic substance metabolic process 11636
        macromolecule metabolic process 10081
          macromolecule modification 4142
            protein modification process 3937
              cellular protein modification process 3937
                protein deacylation 121
                  protein deacetylation 109
                    histone deacetylation 87
                      histone H3 deacetylation + 20
                      histone H4 deacetylation + 13
                      histone deacetylation at centromere + 0
                      negative regulation of histone deacetylation + 7
                      positive regulation of histone deacetylation + 21
                      regulation of histone deacetylation + 32
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.