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ONTOLOGY REPORT - ANNOTATIONS


Term:histone demethylation
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Accession:GO:0016577 term browser browse the term
Definition:The modification of histones by removal of methyl groups.


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histone demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:1624291
G Kdm6b lysine demethylase 6B JBrowse link 10 56,000,494 56,009,582 RGD:1624291
histone H3-K27 demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm6a lysine demethylase 6A JBrowse link X 4,805,493 4,945,788 RGD:1624291
G Kdm6b lysine demethylase 6B JBrowse link 10 56,000,494 56,009,582 RGD:1624291
G Kdm7a lysine demethylase 7A JBrowse link 4 66,915,603 66,957,971 RGD:1624291
RGD:1600115
G Pagr1 Paxip1-associated glutamate-rich protein 1 JBrowse link 1 198,448,790 198,451,078 RGD:1624291
G Phf8 PHD finger protein 8 JBrowse link X 21,063,487 21,168,750 RGD:1624291
histone H3-K36 demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm2a lysine demethylase 2A JBrowse link 1 219,566,130 219,642,294 RGD:1624291
G Kdm2b lysine demethylase 2B JBrowse link 12 39,021,924 39,161,954 RGD:1624291
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:1624291
G Kdm4b lysine demethylase 4B JBrowse link 9 10,656,035 10,734,127 RGD:1624291
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:1624291
G Kdm7a lysine demethylase 7A JBrowse link 4 66,915,603 66,957,971 RGD:1624291
RGD:1600115
G Kdm8 lysine demethylase 8 JBrowse link 1 196,838,460 196,854,192 RGD:1600115
RGD:13792537
RGD:1624291
G Phf8 PHD finger protein 8 JBrowse link X 21,063,487 21,168,750 RGD:1624291
G Riox1 ribosomal oxygenase 1 JBrowse link 6 107,428,508 107,431,126 RGD:1624291
G Riox2 ribosomal oxygenase 2 JBrowse link 11 43,006,190 43,028,722 RGD:1600115
histone H3-K4 demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:9588312
RGD:1624291
RGD:9588315
G Kdm1b lysine demethylase 1B JBrowse link 17 17,987,972 18,028,808 RGD:1624291
G Kdm5a lysine demethylase 5A JBrowse link 4 152,892,388 152,972,196 RGD:9588526
RGD:1624291
G Kdm5b lysine demethylase 5B JBrowse link 13 51,384,371 51,455,392 RGD:1624291
G Kdm5c lysine demethylase 5C JBrowse link X 22,302,664 22,349,298 RGD:1624291
G Kdm5d lysine demethylase 5D JBrowse link Y 501,058 589,267 RGD:1624291
G Riox1 ribosomal oxygenase 1 JBrowse link 6 107,428,508 107,431,126 RGD:1624291
G Riox2 ribosomal oxygenase 2 JBrowse link 11 43,006,190 43,028,722 RGD:1600115
histone H3-K4 demethylation, trimethyl-H3-K4-specific term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jarid2 jumonji and AT-rich interaction domain containing 2 JBrowse link 17 20,183,440 20,365,219 RGD:1600115
G Kdm1b lysine demethylase 1B JBrowse link 17 17,987,972 18,028,808 RGD:1600115
G Kdm5a lysine demethylase 5A JBrowse link 4 152,892,388 152,972,196 RGD:1600115
G Kdm5b lysine demethylase 5B JBrowse link 13 51,384,371 51,455,392 RGD:1600115
G Kdm5c lysine demethylase 5C JBrowse link X 22,302,664 22,349,298 RGD:1600115
G Kdm5d lysine demethylase 5D JBrowse link Y 501,058 589,267 RGD:1600115
histone H3-K9 demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hr HR, lysine demethylase and nuclear receptor corepressor JBrowse link 15 52,241,801 52,261,276 RGD:13792537
G Hsf4 heat shock transcription factor 4 JBrowse link 19 37,225,800 37,232,048 RGD:1624291
G Jmjd1c jumonji domain containing 1C JBrowse link 20 22,751,743 22,914,080 RGD:13792537
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:1624291
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:1624291
RGD:13792537
RGD:1600115
G Kdm3b lysine demethylase 3B JBrowse link 18 27,593,823 27,631,129 RGD:13792537
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:1624291
G Kdm4b lysine demethylase 4B JBrowse link 9 10,656,035 10,734,127 RGD:1624291
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:1624291
G Kdm4d lysine demethylase 4D JBrowse link 8 12,968,192 12,993,651 RGD:1624291
G Kdm7a lysine demethylase 7A JBrowse link 4 66,915,603 66,957,971 RGD:1624291
RGD:1600115
G Phf2 PHD finger protein 2 JBrowse link 17 16,240,458 16,274,626 RGD:1624291
G Phf8 PHD finger protein 8 JBrowse link X 21,063,487 21,168,750 RGD:1624291
histone H3-R2 demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1624291
histone H4-K20 demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm7a lysine demethylase 7A JBrowse link 4 66,915,603 66,957,971 RGD:1624291
RGD:1600115
G Phf8 PHD finger protein 8 JBrowse link X 21,063,487 21,168,750 RGD:1624291
histone H4-R3 demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1600115
RGD:1624291
histone lysine demethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ube2b ubiquitin-conjugating enzyme E2B JBrowse link 10 37,439,947 37,454,867 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19337
    metabolic process 11555
      demethylation 69
        protein demethylation 31
          histone demethylation 29
            histone arginine demethylation + 1
            histone lysine demethylation + 28
Path 2
Term Annotations click to browse term
  biological_process 19337
    metabolic process 11555
      organic substance metabolic process 10949
        organonitrogen compound metabolic process 6852
          protein metabolic process 5973
            cellular protein metabolic process 5293
              cellular protein modification process 3851
                protein dealkylation 31
                  protein demethylation 31
                    histone demethylation 29
                      histone arginine demethylation + 1
                      histone lysine demethylation + 28
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.