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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deubiquitination
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Accession:GO:0016578 term browser browse the term
Definition:The modification of histones by removal of ubiquitin groups.
Synonyms:exact_synonym: histone deubiquitinylation;   histone deubiquitylation


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histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7 ataxin 7 IEA Ensembl GO_REF:0000107 NCBI chr20:27,226,957...27,335,327
Ensembl chr20:27,224,375...27,333,445
JBrowse link
G ATXN7L3 ataxin 7 like 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:19,196,688...19,204,724
Ensembl chr 9:19,196,693...19,202,447
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit IEA UniProt GO_REF:0000104 NCBI chr13:9,895,537...9,905,081
Ensembl chr13:9,895,630...9,905,301
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr26:5,027,305...5,027,595 JBrowse link
G KAT2A lysine acetyltransferase 2A IEA Ensembl GO_REF:0000107 NCBI chr 9:20,778,434...20,787,057
Ensembl chr 9:20,779,042...20,787,067
JBrowse link
G LOC100688271 transcription and mRNA export factor ENY2 pseudogene IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr26:5,027,290...5,027,643 JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component IEA Ensembl GO_REF:0000107 NCBI chr12:13,083,084...13,684,090
Ensembl chr12:13,154,955...13,670,397
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 IEA Ensembl GO_REF:0000107 NCBI chr21:29,917,941...29,919,347
Ensembl chr21:29,917,947...29,919,330
JBrowse link
G TRRAP transformation/transcription domain associated protein IEA Ensembl GO_REF:0000107 NCBI chr 6:10,519,734...10,635,175
Ensembl chr 6:10,519,711...10,632,776
JBrowse link
G USP16 ubiquitin specific peptidase 16 IEA UniProt GO_REF:0000104 NCBI chr31:24,034,399...24,060,268
Ensembl chr31:24,034,448...24,059,874
JBrowse link
G USP21 ubiquitin specific peptidase 21 ISO (MGI:MGI:3846030|PMID:18172164) UniProtKB PMID:18172164 MGI:MGI:3846030 NCBI chr38:21,311,859...21,318,414
Ensembl chr38:21,311,859...21,320,106
JBrowse link
G USP22 ubiquitin specific peptidase 22 IEA Ensembl GO_REF:0000107 NCBI chr 5:42,493,776...42,519,740
Ensembl chr 5:42,496,472...42,540,378
JBrowse link
G USP3 ubiquitin specific peptidase 3 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr30:28,073,484...28,184,121
Ensembl chr30:28,072,655...28,181,749
JBrowse link
G USP36 ubiquitin specific peptidase 36 IEA Ensembl GO_REF:0000107 NCBI chr 9:2,547,316...2,587,360
Ensembl chr 9:2,550,452...2,585,108
JBrowse link
G USP51 ubiquitin specific peptidase 51 ISO (PMID:27083998) UniProtKB PMID:27083998 NCBI chr  X:47,199,583...47,203,909 JBrowse link
histone H2A K63-linked deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:123,081,262...123,143,509 JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:36,339,711...36,467,035
Ensembl chr 4:36,354,922...36,466,880
JBrowse link
G USP16 ubiquitin specific peptidase 16 IEA Ensembl GO_REF:0000107 NCBI chr31:24,034,399...24,060,268
Ensembl chr31:24,034,448...24,059,874
JBrowse link
histone H2B conserved C-terminal lysine deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPOP elongin BC and polycomb repressive complex 2 associated protein IEA Ensembl GO_REF:0000107 NCBI chr 9:23,549,088...23,552,433
Ensembl chr 9:23,549,615...23,550,754
JBrowse link
G USP15 ubiquitin specific peptidase 15 IEA Ensembl GO_REF:0000107 NCBI chr10:5,510,759...5,634,954
Ensembl chr10:5,510,022...5,634,202
JBrowse link
G USP49 ubiquitin specific peptidase 49 IEA Ensembl GO_REF:0000107 NCBI chr12:10,474,873...10,556,900
Ensembl chr12:10,479,733...10,577,918
JBrowse link
G USP7 ubiquitin specific peptidase 7 ISO (MGI:MGI:5822935|PMID:27863226) UniProtKB PMID:27863226 MGI:MGI:5822935 NCBI chr 6:33,277,328...33,315,601
Ensembl chr 6:33,277,444...33,314,491
JBrowse link
monoubiquitinated histone H2A deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASXL1 ASXL transcriptional regulator 1 ISO (PMID:20436459) UniProtKB PMID:20436459 NCBI chr24:21,725,126...21,804,745
Ensembl chr24:21,661,059...21,802,815
JBrowse link
G BAP1 BRCA1 associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr20:37,355,499...37,364,298
Ensembl chr20:37,355,494...37,511,125
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 5:51,037,222...51,079,229
Ensembl chr 5:51,036,874...51,075,259
JBrowse link
G USP16 ubiquitin specific peptidase 16 IEA Ensembl GO_REF:0000107 NCBI chr31:24,034,399...24,060,268
Ensembl chr31:24,034,448...24,059,874
JBrowse link
positive regulation of histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SART3 spliceosome associated factor 3, U4/U6 recycling protein IEA Ensembl GO_REF:0000107 NCBI chr26:18,308,065...18,345,903
Ensembl chr26:18,308,733...18,345,353
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10639
      organic substance metabolic process 10116
        macromolecule metabolic process 8792
          macromolecule modification 3923
            covalent chromatin modification 487
              histone modification 473
                histone deubiquitination 25
                  histone H2A K63-linked deubiquitination 3
                  histone H2B conserved C-terminal lysine deubiquitination 4
                  monoubiquitinated histone deubiquitination + 4
                  negative regulation of histone deubiquitination 0
                  positive regulation of histone deubiquitination 1
                  regulation of histone deubiquitination + 1
Path 2
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10639
      organic substance metabolic process 10116
        organonitrogen compound metabolic process 6194
          protein metabolic process 5375
            protein modification process 3736
              cellular protein modification process 3736
                protein modification by small protein conjugation or removal 900
                  protein modification by small protein removal 143
                    protein deubiquitination 125
                      histone deubiquitination 25
                        histone H2A K63-linked deubiquitination 3
                        histone H2B conserved C-terminal lysine deubiquitination 4
                        monoubiquitinated histone deubiquitination + 4
                        negative regulation of histone deubiquitination 0
                        positive regulation of histone deubiquitination 1
                        regulation of histone deubiquitination + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.