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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deubiquitination
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Accession:GO:0016578 term browser browse the term
Definition:The modification of histones by removal of ubiquitin groups.
Synonyms:exact_synonym: histone deubiquitinylation;   histone deubiquitylation


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histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7 ataxin 7 IDA (PMID:18206972) UniProtKB PMID:18206972 NCBI chr 3:63,863,144...64,003,462
Ensembl chr 3:63,863,155...64,003,462
Ensembl chr 3:63,863,155...64,003,462
Ensembl chr 3:63,863,155...64,003,462
Ensembl chr 3:63,863,155...64,003,462
JBrowse link
G ATXN7L3 ataxin 7 like 3 IDA
IBA
(PMID:18206972)
(PMID:21873635)
UniProtKB
GO_Central
PMID:18206972, PMID:21873635 NCBI chr17:44,191,805...44,199,884
Ensembl chr17:44,191,805...44,200,113
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit IDA
IBA
IEA
(PMID:18206972)
(PMID:21873635)
UniProtKB
GO_Central
PMID:18206972, PMID:21873635 GO_REF:0000104 NCBI chr 8:109,334,347...109,345,954
Ensembl chr 8:109,334,324...109,345,954
JBrowse link
G KAT2A lysine acetyltransferase 2A IDA (PMID:18206972) UniProtKB PMID:18206972 NCBI chr17:42,113,111...42,121,367
Ensembl chr17:42,113,111...42,121,367
JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component IDA (PMID:18206972) UniProtKB PMID:18206972 NCBI chr 6:44,809,057...45,378,051
Ensembl chr 6:44,809,317...45,377,953
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 IDA (PMID:18206972) UniProtKB PMID:18206972 NCBI chr11:6,606,294...6,612,216
Ensembl chr11:6,606,294...6,612,539
JBrowse link
G TRRAP transformation/transcription domain associated protein IDA (PMID:18206972) UniProtKB PMID:18206972 NCBI chr 7:98,878,532...99,013,241
Ensembl chr 7:98,877,933...99,050,831
JBrowse link
G USP16 ubiquitin specific peptidase 16 IDA (PMID:17914355) UniProtKB PMID:17914355 NCBI chr21:29,024,651...29,054,488
Ensembl chr21:29,024,629...29,054,488
JBrowse link
G USP21 ubiquitin specific peptidase 21 ISS UniProtKB GO_REF:0000024 NCBI chr 1:161,159,487...161,165,752
Ensembl chr 1:161,159,450...161,165,723
JBrowse link
G USP22 ubiquitin specific peptidase 22 IDA (PMID:18206972), (PMID:18206973) UniProtKB PMID:18206972, PMID:18206973 NCBI chr17:20,999,596...21,043,409
Ensembl chr17:20,999,596...21,043,760
JBrowse link
G USP3 ubiquitin specific peptidase 3 IDA
IBA
(PMID:17980597)
(PMID:21873635)
UniProtKB
GO_Central
PMID:17980597, PMID:21873635 NCBI chr15:63,504,593...63,594,633
Ensembl chr15:63,504,511...63,594,640
JBrowse link
G USP36 ubiquitin specific peptidase 36 IMP (PMID:29274341) UniProtKB PMID:29274341 NCBI chr17:78,787,381...78,841,439
Ensembl chr17:78,787,381...78,841,441
JBrowse link
G USP51 ubiquitin specific peptidase 51 IMP (PMID:27083998) UniProtKB PMID:27083998 NCBI chr  X:55,484,524...55,489,875
Ensembl chr  X:55,484,616...55,489,202
JBrowse link
histone H2A K63-linked deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IDA
IBA
IMP
(PMID:19202061)
(PMID:21873635)
(PMID:19261746)
UniProtKB
GO_Central
PMID:19202061, PMID:19261746, PMID:21873635 NCBI chr  X:155,071,403...155,126,766
Ensembl chr  X:155,071,420...155,123,074
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 IMP
IBA
(PMID:19202061)
(PMID:21873635)
UniProtKB
GO_Central
PMID:19202061, PMID:21873635 NCBI chr 5:176,905,005...177,022,640
Ensembl chr 5:176,905,005...177,022,633
JBrowse link
G USP16 ubiquitin specific peptidase 16 IMP (PMID:20550933) UniProtKB PMID:20550933 NCBI chr21:29,024,651...29,054,488
Ensembl chr21:29,024,629...29,054,488
JBrowse link
histone H2B conserved C-terminal lysine deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPOP elongin BC and polycomb repressive complex 2 associated protein ISS UniProtKB GO_REF:0000024 NCBI chr17:38,671,703...38,674,957
Ensembl chr17:38,671,703...38,674,957
JBrowse link
G USP15 ubiquitin specific peptidase 15 IDA (PMID:24526689) UniProtKB PMID:24526689 NCBI chr12:62,260,404...62,416,389
Ensembl chr12:62,260,338...62,417,431
JBrowse link
G USP49 ubiquitin specific peptidase 49 IDA (PMID:23824326) UniProtKB PMID:23824326 NCBI chr 6:41,789,896...41,895,375
Ensembl chr 6:41,789,896...41,895,361
JBrowse link
G USP7 ubiquitin specific peptidase 7 ISS UniProtKB GO_REF:0000024 NCBI chr16:8,892,097...8,963,912
Ensembl chr16:8,892,097...8,975,328
Ensembl chr16:8,892,097...8,975,328
JBrowse link
monoubiquitinated histone H2A deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASXL1 ASXL transcriptional regulator 1 IDA (PMID:20436459) UniProtKB PMID:20436459 NCBI chr20:32,358,062...32,439,319
Ensembl chr20:32,358,330...32,439,319
JBrowse link
G BAP1 BRCA1 associated protein 1 IDA (PMID:20436459), (PMID:25451922) UniProt PMID:20436459, PMID:25451922 NCBI chr 3:52,401,004...52,410,030
Ensembl chr 3:52,401,008...52,410,008
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 IMP
IEA
(PMID:17707232) UniProtKB
InterPro
PMID:17707232 GO_REF:0000002 NCBI chr 1:58,654,739...58,700,091
Ensembl chr 1:58,643,440...58,700,077
JBrowse link
G USP16 ubiquitin specific peptidase 16 ISS UniProtKB GO_REF:0000024 NCBI chr21:29,024,651...29,054,488
Ensembl chr21:29,024,629...29,054,488
JBrowse link
positive regulation of histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SART3 spliceosome associated factor 3, U4/U6 recycling protein IDA (PMID:24526689) UniProtKB PMID:24526689 NCBI chr12:108,522,214...108,561,173
Ensembl chr12:108,522,214...108,561,400
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18650
    metabolic process 12284
      organic substance metabolic process 11720
        macromolecule metabolic process 10184
          macromolecule modification 4669
            covalent chromatin modification 523
              histone modification 509
                histone deubiquitination 23
                  histone H2A K63-linked deubiquitination 3
                  histone H2B conserved C-terminal lysine deubiquitination 4
                  monoubiquitinated histone deubiquitination + 4
                  negative regulation of histone deubiquitination 0
                  positive regulation of histone deubiquitination 1
                  regulation of histone deubiquitination + 1
Path 2
Term Annotations click to browse term
  biological_process 18650
    metabolic process 12284
      organic substance metabolic process 11720
        organonitrogen compound metabolic process 7147
          protein metabolic process 6153
            protein modification process 4437
              cellular protein modification process 4437
                protein modification by small protein conjugation or removal 1213
                  protein modification by small protein removal 311
                    protein deubiquitination 293
                      histone deubiquitination 23
                        histone H2A K63-linked deubiquitination 3
                        histone H2B conserved C-terminal lysine deubiquitination 4
                        monoubiquitinated histone deubiquitination + 4
                        negative regulation of histone deubiquitination 0
                        positive regulation of histone deubiquitination 1
                        regulation of histone deubiquitination + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.