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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deubiquitination
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Accession:GO:0016578 term browser browse the term
Definition:The modification of histones by removal of ubiquitin groups.
Synonyms:exact_synonym: histone deubiquitinylation;   histone deubiquitylation


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histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn7 ataxin 7 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:13,961,283...14,107,316
Ensembl chr14:13,961,440...14,107,302
JBrowse link
G Atxn7l3 ataxin 7-like 3 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr11:102,289,300...102,297,045
Ensembl chr11:102,289,300...102,296,631
JBrowse link
G Eny2 ENY2 transcription and export complex 2 subunit ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr15:44,428,082...44,438,256
Ensembl chr15:44,428,042...44,438,256
JBrowse link
G Kat2a K(lysine) acetyltransferase 2A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:100,704,746...100,712,485
Ensembl chr11:100,704,746...100,712,465
JBrowse link
G Supt3 SPT3, SAGA and STAGA complex component ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:44,777,118...45,119,294
Ensembl chr17:44,777,152...45,119,290
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 7:105,742,894...105,744,375
Ensembl chr 7:105,739,393...105,744,361
JBrowse link
G Trrap transformation/transcription domain-associated protein ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:144,767,737...144,859,778
Ensembl chr 5:144,767,732...144,859,778
JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:87,454,985...87,483,515
Ensembl chr16:87,454,703...87,483,517
JBrowse link
G Usp21 ubiquitin specific peptidase 21 IDA (MGI:MGI:3846030|PMID:18172164) UniProtKB PMID:18172164 MGI:MGI:3846030 NCBI chr 1:171,281,949...171,287,961
Ensembl chr 1:171,281,945...171,287,991
JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:61,151,781...61,175,059
Ensembl chr11:61,151,785...61,175,055
JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 9:66,514,639...66,593,148
Ensembl chr 9:66,514,637...66,593,142
JBrowse link
G Usp36 ubiquitin specific peptidase 36 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr11:118,259,651...118,290,260
Ensembl chr11:118,259,651...118,290,244
JBrowse link
G Usp51 ubiquitin specific protease 51 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:153,006,469...153,011,364
Ensembl chr  X:153,006,469...153,009,416
JBrowse link
histone H2A K63-linked deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brcc3 BRCA1/BRCA2-containing complex, subunit 3 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr  X:75,416,628...75,455,702
Ensembl chr  X:75,416,628...75,454,001
JBrowse link
G Gm5136 predicted gene 5136 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:108,699,044...108,700,160
Ensembl chr10:108,698,764...108,700,160
JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr13:55,027,880...55,100,363
Ensembl chr13:55,027,880...55,100,300
JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:87,454,985...87,483,515
Ensembl chr16:87,454,703...87,483,517
JBrowse link
histone H2B conserved C-terminal lysine deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epop elongin BC and polycomb repressive complex 2 associated protein IMP (MGI:MGI:5822935|PMID:27863226) UniProtKB PMID:27863226 MGI:MGI:5822935 NCBI chr11:97,627,387...97,629,716
Ensembl chr11:97,627,389...97,629,702
JBrowse link
G Usp15 ubiquitin specific peptidase 15 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr10:123,105,006...123,197,281
Ensembl chr10:123,105,006...123,196,995
JBrowse link
G Usp49 ubiquitin specific peptidase 49 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr17:47,630,690...47,686,739
Ensembl chr17:47,630,690...47,686,738
JBrowse link
G Usp7 ubiquitin specific peptidase 7 IMP (MGI:MGI:5822935|PMID:27863226) UniProtKB PMID:27863226 MGI:MGI:5822935 NCBI chr16:8,688,722...8,757,067
Ensembl chr16:8,689,595...8,792,308
JBrowse link
monoubiquitinated histone H2A deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 additional sex combs like 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:153,345,830...153,404,007
Ensembl chr 2:153,345,829...153,404,007
JBrowse link
G Bap1 Brca1 associated protein 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:31,251,352...31,259,930
Ensembl chr14:31,251,450...31,259,944
JBrowse link
G Mysm1 myb-like, SWIRM and MPN domains 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:94,942,037...94,979,155
Ensembl chr 4:94,942,040...94,979,100
JBrowse link
G Usp16 ubiquitin specific peptidase 16 IMP (MGI:MGI:5527017|PMID:24034696) UniProtKB PMID:24034696 MGI:MGI:5527017 NCBI chr16:87,454,985...87,483,515
Ensembl chr16:87,454,703...87,483,517
JBrowse link
positive regulation of histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart3 squamous cell carcinoma antigen recognized by T cells 3 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:113,742,444...113,772,400
Ensembl chr 5:113,742,446...113,772,510
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23360
    metabolic process 11269
      organic substance metabolic process 10739
        macromolecule metabolic process 9262
          macromolecule modification 3848
            covalent chromatin modification 479
              histone modification 465
                histone deubiquitination 24
                  histone H2A K63-linked deubiquitination 4
                  histone H2B conserved C-terminal lysine deubiquitination 4
                  monoubiquitinated histone deubiquitination + 4
                  negative regulation of histone deubiquitination 0
                  positive regulation of histone deubiquitination 1
                  regulation of histone deubiquitination + 1
Path 2
Term Annotations click to browse term
  biological_process 23360
    metabolic process 11269
      organic substance metabolic process 10739
        organonitrogen compound metabolic process 6248
          protein metabolic process 5404
            protein modification process 3656
              cellular protein modification process 3656
                protein modification by small protein conjugation or removal 830
                  protein modification by small protein removal 140
                    protein deubiquitination 119
                      histone deubiquitination 24
                        histone H2A K63-linked deubiquitination 4
                        histone H2B conserved C-terminal lysine deubiquitination 4
                        monoubiquitinated histone deubiquitination + 4
                        negative regulation of histone deubiquitination 0
                        positive regulation of histone deubiquitination 1
                        regulation of histone deubiquitination + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.