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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deubiquitination
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Accession:GO:0016578 term browser browse the term
Definition:The modification of histones by removal of ubiquitin groups.
Synonyms:exact_synonym: histone deubiquitinylation;   histone deubiquitylation


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histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN7 ataxin 7 IEA Ensembl GO_REF:0000107 NCBI chr13:45,356,350...45,514,816
Ensembl chr13:45,401,127...45,498,067
JBrowse link
G ATXN7L3 ataxin 7 like 3 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr12:19,012,324...19,020,136
Ensembl chr12:19,012,743...19,019,783
JBrowse link
G ENY2 ENY2 transcription and export complex 2 subunit IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:28,193,631...28,203,549
Ensembl chr 4:28,191,162...28,203,485
JBrowse link
G KAT2A lysine acetyltransferase 2A IEA Ensembl GO_REF:0000107 NCBI chr12:20,638,493...20,647,464
Ensembl chr12:20,638,493...20,647,463
JBrowse link
G SUPT3H SPT3 homolog, SAGA and STAGA complex component IEA Ensembl GO_REF:0000107 NCBI chr 7:39,763,303...40,161,123
Ensembl chr 7:39,751,927...40,161,114
JBrowse link
G TAF10 TATA-box binding protein associated factor 10 IEA Ensembl GO_REF:0000107 NCBI chr 9:3,144,262...3,145,702
Ensembl chr 9:3,144,277...3,145,720
JBrowse link
G TRRAP transformation/transcription domain associated protein IEA Ensembl GO_REF:0000107 NCBI chr 3:5,903,205...6,029,343
Ensembl chr 3:5,909,237...6,029,340
JBrowse link
G USP16 ubiquitin specific peptidase 16 IEA UniProt GO_REF:0000104 NCBI chr13:192,376,850...192,406,474
Ensembl chr13:192,376,881...192,406,474
JBrowse link
G USP21 ubiquitin specific peptidase 21 ISO (MGI:MGI:3846030|PMID:18172164) UniProtKB PMID:18172164 MGI:MGI:3846030 NCBI chr 4:89,289,056...89,295,232
Ensembl chr 4:89,289,056...89,295,237
JBrowse link
G USP22 ubiquitin specific peptidase 22 IEA Ensembl GO_REF:0000107 NCBI chr12:61,273,939...61,308,381
Ensembl chr12:61,271,641...61,308,270
JBrowse link
G USP3 ubiquitin specific peptidase 3 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:108,414,358...108,515,611
Ensembl chr 1:108,414,360...108,515,451
JBrowse link
G USP36 ubiquitin specific peptidase 36 ISO (PMID:29274341) UniProtKB PMID:29274341 NCBI chr12:3,309,176...3,348,531 JBrowse link
G USP51 ubiquitin specific peptidase 51 IEA Ensembl GO_REF:0000107 NCBI chr  X:48,047,658...48,051,941
Ensembl chr  X:48,048,223...48,050,355
JBrowse link
histone H2A K63-linked deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRCC3 BRCA1/BRCA2-containing complex subunit 3 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr  X:125,383,392...125,439,082
Ensembl chr  X:125,383,414...125,439,082
JBrowse link
G UIMC1 ubiquitin interaction motif containing 1 ISS
IEA
IBA
(PMID:21873635) UniProt
Ensembl
GO_Central
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:80,895,631...81,040,712
Ensembl chr 2:80,919,244...81,035,711
JBrowse link
G USP16 ubiquitin specific peptidase 16 IEA Ensembl GO_REF:0000107 NCBI chr13:192,376,850...192,406,474
Ensembl chr13:192,376,881...192,406,474
JBrowse link
histone H2B conserved C-terminal lysine deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EPOP elongin BC and polycomb repressive complex 2 associated protein IEA Ensembl GO_REF:0000107 NCBI chr12:23,435,388...23,438,235
Ensembl chr12:23,435,402...23,436,541
JBrowse link
G USP15 ubiquitin specific peptidase 15 IEA Ensembl GO_REF:0000107 NCBI chr 5:26,964,380...27,082,549
Ensembl chr 5:26,964,510...27,097,458
JBrowse link
G USP49 ubiquitin specific peptidase 49 IEA Ensembl GO_REF:0000107 NCBI chr 7:36,978,291...37,054,027
Ensembl chr 7:36,981,383...37,030,151
JBrowse link
G USP7 ubiquitin specific peptidase 7 ISO (MGI:MGI:5822935|PMID:27863226) UniProtKB PMID:27863226 MGI:MGI:5822935 NCBI chr 3:33,754,357...33,810,480
Ensembl chr 3:33,775,829...33,810,466
JBrowse link
monoubiquitinated histone H2A deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASXL1 ASXL transcriptional regulator 1 IEA Ensembl GO_REF:0000107 NCBI chr17:35,985,978...36,067,122
Ensembl chr17:35,985,535...36,067,122
JBrowse link
G BAP1 BRCA1 associated protein 1 IEA Ensembl GO_REF:0000107 NCBI chr13:34,544,570...34,553,538
Ensembl chr13:34,544,575...34,553,621
JBrowse link
G MYSM1 Myb like, SWIRM and MPN domains 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 6:153,755,209...153,798,412
Ensembl chr 6:153,756,181...153,795,535
JBrowse link
G USP16 ubiquitin specific peptidase 16 IEA Ensembl GO_REF:0000107 NCBI chr13:192,376,850...192,406,474
Ensembl chr13:192,376,881...192,406,474
JBrowse link
positive regulation of histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SART3 spliceosome associated factor 3, U4/U6 recycling protein IEA Ensembl GO_REF:0000107 NCBI chr14:42,223,752...42,259,992
Ensembl chr14:42,223,725...42,297,113
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16524
    metabolic process 10565
      organic substance metabolic process 10015
        macromolecule metabolic process 8711
          macromolecule modification 3889
            covalent chromatin modification 480
              histone modification 466
                histone deubiquitination 23
                  histone H2A K63-linked deubiquitination 3
                  histone H2B conserved C-terminal lysine deubiquitination 4
                  monoubiquitinated histone deubiquitination + 4
                  negative regulation of histone deubiquitination 0
                  positive regulation of histone deubiquitination 1
                  regulation of histone deubiquitination + 1
Path 2
Term Annotations click to browse term
  biological_process 16524
    metabolic process 10565
      organic substance metabolic process 10015
        organonitrogen compound metabolic process 6072
          protein metabolic process 5289
            protein modification process 3704
              cellular protein modification process 3704
                protein modification by small protein conjugation or removal 882
                  protein modification by small protein removal 134
                    protein deubiquitination 117
                      histone deubiquitination 23
                        histone H2A K63-linked deubiquitination 3
                        histone H2B conserved C-terminal lysine deubiquitination 4
                        monoubiquitinated histone deubiquitination + 4
                        negative regulation of histone deubiquitination 0
                        positive regulation of histone deubiquitination 1
                        regulation of histone deubiquitination + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.