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ONTOLOGY REPORT - ANNOTATIONS


Term:histone deubiquitination
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Accession:GO:0016578 term browser browse the term
Definition:The modification of histones by removal of ubiquitin groups.
Synonyms:exact_synonym: histone deubiquitinylation;   histone deubiquitylation


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histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atxn7 ataxin 7 ISO (PMID:18206972) UniProtKB PMID:18206972 NCBI chrNW_004936637:2,422,260...2,508,681 JBrowse link
G Atxn7l3 ataxin 7 like 3 ISO (PMID:18206972) UniProtKB PMID:18206972 NCBI chrNW_004936541:657,196...663,967 JBrowse link
G Eny2 ENY2 transcription and export complex 2 subunit ISO (PMID:18206972) UniProtKB PMID:18206972 NCBI chrNW_004936470:35,634,650...35,649,683 JBrowse link
G Kat2a lysine acetyltransferase 2A ISO (PMID:18206972) UniProtKB PMID:18206972 NCBI chrNW_004936490:16,952,698...16,960,424 JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component ISO (PMID:18206972) UniProtKB PMID:18206972 NCBI chrNW_004936476:14,857,428...15,336,145 JBrowse link
G Taf10 TATA-box binding protein associated factor 10 ISO (PMID:18206972) UniProtKB PMID:18206972 NCBI chrNW_004936842:667,960...669,367 JBrowse link
G Trrap transformation/transcription domain associated protein ISO (PMID:18206972) UniProtKB PMID:18206972 NCBI chrNW_004936750:1,245,926...1,360,226 JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO (PMID:17914355) UniProtKB PMID:17914355 NCBI chrNW_004936500:12,963,811...12,989,024 JBrowse link
G Usp21 ubiquitin specific peptidase 21 ISO (MGI:MGI:3846030|PMID:18172164) UniProtKB PMID:18172164 MGI:MGI:3846030 NCBI chrNW_004936903:462,617...469,592 JBrowse link
G Usp22 ubiquitin specific peptidase 22 ISO (PMID:18206972), (PMID:18206973) UniProtKB PMID:18206972, PMID:18206973 NCBI chrNW_004936741:580,230...618,322 JBrowse link
G Usp3 ubiquitin specific peptidase 3 ISO (PMID:17980597) UniProtKB PMID:17980597 NCBI chrNW_004936471:24,032,644...24,130,543 JBrowse link
G Usp36 ubiquitin specific peptidase 36 ISO (PMID:29274341) UniProtKB PMID:29274341 NCBI chrNW_004936594:3,194,842...3,228,701 JBrowse link
G Usp51 ubiquitin specific peptidase 51 ISO (PMID:27083998) UniProtKB PMID:27083998 NCBI chrNW_004936819:1,115,524...1,119,083 JBrowse link
histone H2A K63-linked deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brcc3 BRCA1/BRCA2-containing complex subunit 3 ISO (PMID:19202061)
(PMID:19261746)
UniProtKB PMID:19202061, PMID:19261746 NCBI chrNW_004936927:341,114...380,817 JBrowse link
G Uimc1 ubiquitin interaction motif containing 1 ISO (PMID:19202061) UniProtKB PMID:19202061 NCBI chrNW_004936597:1,143,835...1,260,339 JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO (PMID:20550933) UniProtKB PMID:20550933 NCBI chrNW_004936500:12,963,811...12,989,024 JBrowse link
histone H2B conserved C-terminal lysine deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epop elongin BC and polycomb repressive complex 2 associated protein ISO (MGI:MGI:5822935|PMID:27863226) UniProtKB PMID:27863226 MGI:MGI:5822935 NCBI chrNW_004936490:14,086,278...14,088,746 JBrowse link
G Usp15 ubiquitin specific peptidase 15 ISO (PMID:24526689) UniProtKB PMID:24526689 NCBI chrNW_004936545:978,318...1,094,729 JBrowse link
G Usp49 ubiquitin specific peptidase 49 ISO (PMID:23824326) UniProtKB PMID:23824326 NCBI chrNW_004936476:17,946,875...18,002,081 JBrowse link
G Usp7 ubiquitin specific peptidase 7 ISO (MGI:MGI:5822935|PMID:27863226) UniProtKB PMID:27863226 MGI:MGI:5822935 NCBI chrNW_004936530:7,693,681...7,724,215 JBrowse link
monoubiquitinated histone H2A deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 ISO (PMID:20436459) UniProtKB PMID:20436459 NCBI chrNW_004936485:19,218,494...19,297,188 JBrowse link
G Bap1 BRCA1 associated protein 1 ISO (PMID:20436459), (PMID:25451922) UniProt PMID:20436459, PMID:25451922 NCBI chrNW_004936473:3,239,009...3,247,806 JBrowse link
G Mysm1 Myb like, SWIRM and MPN domains 1 ISO (PMID:17707232) UniProtKB PMID:17707232 NCBI chrNW_004936522:3,105,018...3,143,215 JBrowse link
G Usp16 ubiquitin specific peptidase 16 ISO (MGI:MGI:5527017|PMID:24034696) UniProtKB PMID:24034696 MGI:MGI:5527017 NCBI chrNW_004936500:12,963,811...12,989,024 JBrowse link
positive regulation of histone deubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein ISO (PMID:24526689) UniProtKB PMID:24526689 NCBI chrNW_004936769:450,919...490,938 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11968
    metabolic process 7653
      organic substance metabolic process 7353
        macromolecule metabolic process 6381
          macromolecule modification 3026
            covalent chromatin modification 409
              histone modification 396
                histone deubiquitination 23
                  histone H2A K63-linked deubiquitination 3
                  histone H2B conserved C-terminal lysine deubiquitination 4
                  monoubiquitinated histone deubiquitination + 4
                  negative regulation of histone deubiquitination 0
                  positive regulation of histone deubiquitination 1
                  regulation of histone deubiquitination + 1
Path 2
Term Annotations click to browse term
  biological_process 11968
    metabolic process 7653
      organic substance metabolic process 7353
        organonitrogen compound metabolic process 4476
          protein metabolic process 3874
            protein modification process 2900
              cellular protein modification process 2900
                protein modification by small protein conjugation or removal 654
                  protein modification by small protein removal 109
                    protein deubiquitination 95
                      histone deubiquitination 23
                        histone H2A K63-linked deubiquitination 3
                        histone H2B conserved C-terminal lysine deubiquitination 4
                        monoubiquitinated histone deubiquitination + 4
                        negative regulation of histone deubiquitination 0
                        positive regulation of histone deubiquitination 1
                        regulation of histone deubiquitination + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.