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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleosome positioning
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Accession:GO:0016584 term browser browse the term
Definition:Ordering of successions of nucleosomes into regular arrays so that nucleosomes are positioned at defined distances from one another.
Synonyms:exact_synonym: nucleosome spacing


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nucleosome positioning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07028349.1 RGD:13792537
G Ctcf CCCTC-binding factor JBrowse link 19 37,600,151 37,649,674 RGD:1624291
RGD:1600115
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:13792537
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:13792537
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:13792537
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:1624291
RGD:13792537
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:1624291
RGD:13792537
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:13792537
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:13792537
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:1624291
RGD:13792537
RGD:1600115
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:1624291
RGD:13792537
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:13792537
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:1624291
G Prdm9 PR/SET domain 9 JBrowse link 1 57,533,602 57,555,155 RGD:1624291
RGD:1600115
G Rsf1 remodeling and spacing factor 1 JBrowse link 1 162,549,222 162,671,962 RGD:1624291
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:1624291
RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    cellular process 18618
      cellular component organization or biogenesis 6706
        cellular component organization 6456
          cellular component assembly 2955
            chromatin assembly 169
              nucleosome positioning 16
Path 2
Term Annotations click to browse term
  biological_process 19858
    cellular process 18618
      cellular component organization or biogenesis 6706
        cellular component organization 6456
          organelle organization 4029
            chromosome organization 1235
              chromatin organization 834
                chromatin assembly or disassembly 191
                  chromatin assembly 169
                    nucleosome positioning 16
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.