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ONTOLOGY REPORT - ANNOTATIONS


Term:nuclear speck
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Accession:GO:0016607 term browser browse the term
Definition:A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
Synonyms:exact_synonym: nuclear speckle;   nuclear speckles;   splicing speckle
 narrow_synonym: speckle domain
 related_synonym: speckle focus
 xref: MIPS_funcat:70.10.09


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nuclear speck term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AAGAB alpha and gamma adaptin binding protein JBrowse link 15 64,419,994 64,477,586 RGD:9068941
G ABITRAM actin binding transcription modulator JBrowse link 9 108,258,285 108,265,043 RGD:9068941
G ACIN1 apoptotic chromatin condensation inducer 1 JBrowse link 14 21,975,370 22,012,092 RGD:9068941
G ADAMTS4 ADAM metallopeptidase with thrombospondin type 1 motif 4 JBrowse link 1 140,514,247 140,523,623 RGD:9068941
G AFDN afadin, adherens junction formation factor JBrowse link 6 170,776,707 170,882,784 RGD:9068941
G AFF2 AF4/FMR2 family member 2 JBrowse link X 147,950,886 148,446,235 RGD:9068941
G AK6 adenylate kinase 6 JBrowse link 5 46,201,985 46,220,364 RGD:9068941
G AKAP17A A-kinase anchoring protein 17A JBrowse link X 1,721,734 1,730,701 RGD:9068941
G AKAP8L A-kinase anchoring protein 8 like JBrowse link 19 15,897,896 15,936,684 RGD:9068941
G ALKBH5 alkB homolog 5, RNA demethylase JBrowse link 17 38,003,362 38,030,715 RGD:9068941
G ALYREF Aly/REF export factor JBrowse link 17 81,995,578 82,000,836 RGD:9068941
G AP5Z1 adaptor related protein complex 5 subunit zeta 1 JBrowse link 7 5,068,846 5,085,087 RGD:9068941
G APBB1 amyloid beta precursor protein binding family B member 1 JBrowse link 11 6,210,077 6,233,992 RGD:9068941
G APEX1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 14 19,381,911 19,384,542 RGD:9068941
G API5 apoptosis inhibitor 5 JBrowse link 11 43,759,414 43,791,975 RGD:9068941
G AR androgen receptor JBrowse link X 66,790,419 66,975,921 RGD:9068941
G ARHGAP18 Rho GTPase activating protein 18 JBrowse link 6 131,475,016 131,609,310 RGD:9068941
G ARL6IP4 ADP ribosylation factor like GTPase 6 interacting protein 4 JBrowse link 12 124,821,224 124,824,088 RGD:9068941
G ASCC1 activating signal cointegrator 1 complex subunit 1 JBrowse link 10 71,082,355 71,207,093 RGD:9068941
G ASCC2 activating signal cointegrator 1 complex subunit 2 JBrowse link 22 28,637,041 28,686,019 RGD:9068941
G ASCC3 activating signal cointegrator 1 complex subunit 3 JBrowse link 6 102,224,820 102,599,521 RGD:9068941
G ATOH8 atonal bHLH transcription factor 8 JBrowse link 2A 87,352,506 87,386,824 RGD:9068941
G ATP6V0A1 ATPase H+ transporting V0 subunit a1 JBrowse link 17 15,017,692 15,082,491 RGD:9068941
G ATPAF2 ATP synthase mitochondrial F1 complex assembly factor 2 JBrowse link 17 38,203,888 38,224,911 RGD:9068941
G ATXN2L ataxin 2 like JBrowse link 16 29,210,011 29,223,859 RGD:9068941
G BARD1 BRCA1 associated RING domain 1 JBrowse link 2B 220,456,972 220,541,145 RGD:9068941
G BASP1 brain abundant membrane attached signal protein 1 JBrowse link 5 17,352,374 17,410,703 RGD:9068941
G BAZ2A bromodomain adjacent to zinc finger domain 2A JBrowse link 12 32,529,106 32,568,619 RGD:9068941
G BCAS2 BCAS2 pre-mRNA processing factor JBrowse link 1 123,024,910 123,039,073 RGD:9068941
G BCLAF1 BCL2 associated transcription factor 1 JBrowse link 6 138,111,309 138,144,098 RGD:9068941
G BDNF brain derived neurotrophic factor JBrowse link 11 27,520,306 27,589,239 RGD:9068941
G BMP2K BMP2 inducible kinase JBrowse link 4 51,125,098 51,267,676 RGD:9068941
G BNIP3L BCL2 interacting protein 3 like JBrowse link 8 22,567,167 22,593,004 RGD:9068941
G BRD1 bromodomain containing 1 JBrowse link 22 48,998,037 49,048,101 RGD:9068941
G BRD2 bromodomain containing 2 JBrowse link 6 33,657,488 33,666,054 RGD:9068941
G C12H12orf57 chromosome 12 C12orf57 homolog JBrowse link 12 6,987,964 6,990,580 RGD:9068941
G CACTIN cactin, spliceosome C complex subunit JBrowse link 19 3,585,688 3,602,031 RGD:9068941
G CARMIL1 capping protein regulator and myosin 1 linker 1 JBrowse link 6 25,440,972 25,781,027 RGD:9068941
G CASC3 CASC3 exon junction complex subunit JBrowse link 17 17,339,060 17,370,076 RGD:9068941
G CBLL1 Cbl proto-oncogene like 1 JBrowse link 7 112,448,099 112,466,261 RGD:9068941
G CBX4 chromobox 4 JBrowse link 17 79,450,190 79,458,866 RGD:9068941
G CBY1 chibby family member 1, beta catenin antagonist JBrowse link 22 37,389,924 37,406,879 RGD:9068941
G CCNB3 cyclin B3 JBrowse link X 50,157,122 50,223,759 RGD:9068941
G CCNL1 cyclin L1 JBrowse link 3 162,250,825 162,264,645 RGD:9068941
G CCNL2 cyclin L2 JBrowse link 1 1,343,608 1,355,392 RGD:9068941
G CD2BP2 CD2 cytoplasmic tail binding protein 2 JBrowse link 16 30,723,277 30,727,885 RGD:9068941
G CDC25C cell division cycle 25C JBrowse link 5 139,795,138 139,843,395 RGD:9068941
G CDC40 cell division cycle 40 JBrowse link 6 112,058,835 112,108,985 RGD:9068941
G CDC5L cell division cycle 5 like JBrowse link 6 45,265,845 45,326,392 RGD:9068941
G CDK12 cyclin dependent kinase 12 JBrowse link 17 17,937,024 18,040,763 RGD:9068941
G CDK13 cyclin dependent kinase 13 JBrowse link 7 44,177,940 44,324,319 RGD:9068941
G CDYL chromodomain Y like JBrowse link 6 4,794,549 4,976,777 RGD:9068941
G CHD5 chromodomain helicase DNA binding protein 5 JBrowse link 1 6,121,040 6,190,367 RGD:9068941
G CHTOP chromatin target of PRMT1 JBrowse link 1 132,617,934 132,630,654 RGD:9068941
G CIR1 corepressor interacting with RBPJ, CIR1 JBrowse link 2B 179,080,244 179,127,915 RGD:9068941
G CKAP4 cytoskeleton associated protein 4 JBrowse link 12 107,212,467 107,221,835 RGD:9068941
G CLK2 CDC like kinase 2 JBrowse link 1 134,213,237 134,223,842 RGD:9068941
G CLK3 CDC like kinase 3 JBrowse link 15 73,181,664 73,196,466 RGD:9068941
G CNOT7 CCR4-NOT transcription complex subunit 7 JBrowse link 8 13,383,044 13,404,896 RGD:9068941
G COP1 COP1 E3 ubiquitin ligase JBrowse link 1 155,155,860 155,425,664 RGD:9068941
G COPS4 COP9 signalosome subunit 4 JBrowse link 4 46,980,585 47,022,117 RGD:9068941
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,537,904 69,562,570 RGD:9068941
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 20 19,957,545 19,975,809 RGD:9068941
G CRY2 cryptochrome circadian regulator 2 JBrowse link 11 46,293,874 46,329,759 RGD:9068941
G CSNK1A1 casein kinase 1 alpha 1 JBrowse link 5 150,929,397 150,985,930 RGD:9068941
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,610,892 10,639,808 RGD:9068941
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 11 93,499,411 93,509,895 RGD:9068941
G CWC22 CWC22 spliceosome associated protein homolog JBrowse link 2B 184,901,707 184,963,884 RGD:9068941
G CWC25 CWC25 spliceosome associated protein homolog JBrowse link 17 18,719,907 18,745,213 RGD:9068941
G CXXC1 CXXC finger protein 1 JBrowse link 18 47,010,403 47,016,383 RGD:9068941
G DAZAP2 DAZ associated protein 2 JBrowse link 12 38,393,419 38,398,471 RGD:9068941
G DDX17 DEAD-box helicase 17 JBrowse link 22 37,218,884 37,241,430 RGD:9068941
G DDX39A DExD-box helicase 39A JBrowse link 19 14,816,362 14,826,873 RGD:9068941
G DDX39B DExD-box helicase 39B JBrowse link 6 32,081,210 32,093,135 RGD:9068941
G DDX3X DEAD-box helicase 3, X-linked JBrowse link X 41,474,515 41,491,479 RGD:9068941
G DDX42 DEAD-box helicase 42 JBrowse link 17 62,998,505 63,043,179 RGD:9068941
G DDX46 DEAD-box helicase 46 JBrowse link 5 136,302,356 136,375,992 RGD:9068941
G DENND1B DENN domain containing 1B JBrowse link 1 177,415,682 177,676,293 RGD:9068941
G DGKQ diacylglycerol kinase theta JBrowse link 4 993,261 1,009,414 RGD:9068941
G DGKZ diacylglycerol kinase zeta JBrowse link 11 46,841,605 46,889,763 RGD:9068941
G DHX15 DEAH-box helicase 15 JBrowse link 4 24,216,726 24,273,790 RGD:9068941
G DHX36 DEAH-box helicase 36 JBrowse link 3 158,885,041 158,935,952 RGD:9068941
G DNAAF1 dynein axonemal assembly factor 1 JBrowse link 16 84,153,949 84,184,991 RGD:9068941
G DOCK1 dedicator of cytokinesis 1 JBrowse link 10 127,744,782 128,289,981 RGD:9068941
G DUSP10 dual specificity phosphatase 10 JBrowse link 1 202,366,333 202,407,020 RGD:9068941
G DUSP11 dual specificity phosphatase 11 JBrowse link 2A 75,358,695 75,375,785 RGD:9068941
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A JBrowse link 21 37,092,172 37,231,916 RGD:9068941
G DYRK3 dual specificity tyrosine phosphorylation regulated kinase 3 JBrowse link 1 186,516,874 186,531,191 RGD:9068941
G E2F7 E2F transcription factor 7 JBrowse link 12 77,388,950 77,433,262 RGD:9068941
G EAF1 ELL associated factor 1 JBrowse link 3 15,689,745 15,705,300 RGD:9068941
G EAF2 ELL associated factor 2 JBrowse link 3 125,844,338 125,895,416 RGD:9068941
G EFTUD2 elongation factor Tu GTP binding domain containing 2 JBrowse link 17 12,595,715 12,644,147 RGD:9068941
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 32,429,265 32,446,860 RGD:9068941
G EIF4ENIF1 eukaryotic translation initiation factor 4E nuclear import factor 1 JBrowse link 22 30,322,498 30,378,322 RGD:9068941
G ELL elongation factor for RNA polymerase II JBrowse link 19 18,894,054 18,969,923 RGD:9068941
G EP400 E1A binding protein p400 JBrowse link 12 134,038,649 134,165,972 RGD:9068941
G EPAS1 endothelial PAS domain protein 1 JBrowse link 2A 47,332,286 47,421,560 RGD:9068941
G EPOR erythropoietin receptor JBrowse link 19 11,635,248 11,642,383 RGD:9068941
G ERBIN erbb2 interacting protein JBrowse link 5 49,589,418 49,739,091 RGD:9068941
G ESX1 ESX homeobox 1 JBrowse link X 103,753,031 103,757,798 RGD:9068941
G FAM107A family with sequence similarity 107 member A JBrowse link 3 59,903,602 59,967,013 RGD:9068941
G FAM193B family with sequence similarity 193 member B JBrowse link 5 179,881,778 179,915,942 RGD:9068941
G FAM76B family with sequence similarity 76 member B JBrowse link 11 94,301,937 94,322,758 RGD:9068941
G FBXL4 F-box and leucine rich repeat protein 4 JBrowse link 6 100,599,381 100,661,249 RGD:9068941
G FEV FEV transcription factor, ETS family member JBrowse link 2B 224,832,403 224,838,813 RGD:9068941
G FIBP FGF1 intracellular binding protein JBrowse link 11 64,573,537 64,578,328 RGD:9068941
G FNBP4 formin binding protein 4 JBrowse link 11 48,219,735 48,270,993 RGD:9068941
G FNDC1 fibronectin type III domain containing 1 JBrowse link 6 162,099,887 162,173,981 RGD:9068941
G FOXO4 forkhead box O4 JBrowse link X 70,422,504 70,429,971 RGD:9068941
G FTO FTO alpha-ketoglutarate dependent dioxygenase JBrowse link 16 53,023,203 53,451,708 RGD:9068941
G FYTTD1 forty-two-three domain containing 1 JBrowse link 3 205,049,920 205,084,249 RGD:9068941
G GADD45A growth arrest and DNA damage inducible alpha JBrowse link 1 68,880,912 68,884,188 RGD:9068941
G GATAD2A GATA zinc finger domain containing 2A JBrowse link 19 19,824,575 19,942,670 RGD:9068941
G GATAD2B GATA zinc finger domain containing 2B JBrowse link 1 132,794,458 132,907,674 RGD:9068941
G GCAT glycine C-acetyltransferase JBrowse link 22 36,554,050 36,563,429 RGD:9068941
G GLI2 GLI family zinc finger 2 JBrowse link 2B 121,242,932 121,499,411 RGD:9068941
G GLI3 GLI family zinc finger 3 JBrowse link 7 42,056,566 42,322,865 RGD:9068941
G GLIS2 GLIS family zinc finger 2 JBrowse link 16 4,418,525 4,425,633 RGD:9068941
G GPATCH2 G-patch domain containing 2 JBrowse link 1 197,857,935 198,059,484 RGD:9068941
G GRK5 G protein-coupled receptor kinase 5 JBrowse link 10 119,200,901 119,448,006 RGD:9068941
G GTF2E2 general transcription factor IIE subunit 2 JBrowse link 8 27,071,634 27,151,147 RGD:9068941
G GTF2H2 general transcription factor IIH subunit 2 JBrowse link 5 45,985,077 46,028,618 RGD:9068941
G GTF2H4 general transcription factor IIH subunit 4 JBrowse link 6 31,521,501 31,527,456 RGD:9068941
G HABP4 hyaluronan binding protein 4 JBrowse link 9 95,640,088 95,708,956 RGD:9068941
G HAUS6 HAUS augmin like complex subunit 6 JBrowse link 9 19,366,079 19,417,229 RGD:9068941
G HBP1 HMG-box transcription factor 1 JBrowse link 7 111,873,196 111,906,437 RGD:9068941
G HDAC4 histone deacetylase 4 JBrowse link 2B 245,123,061 245,428,441 RGD:9068941
G HDAC5 histone deacetylase 5 JBrowse link 17 13,464,171 13,480,763 RGD:9068941
G HEXIM2 HEXIM P-TEFb complex subunit 2 JBrowse link 17 12,333,957 12,343,424 RGD:9068941
G HIF1A hypoxia inducible factor 1 subunit alpha JBrowse link 14 60,552,374 60,604,885 RGD:9068941
G HIF3A hypoxia inducible factor 3 subunit alpha JBrowse link 19 51,815,809 51,862,039 RGD:9068941
G HIKESHI heat shock protein nuclear import factor hikeshi JBrowse link 11 84,961,298 85,004,740 RGD:9068941
G HIPK1 homeodomain interacting protein kinase 1 JBrowse link 1 123,629,271 123,677,714 RGD:9068941
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 1 225,830,663 225,842,031 RGD:9068941
G HOXA6 homeobox A6 JBrowse link 7 27,389,679 27,391,997 RGD:9068941
G HOXB2 homeobox B2 JBrowse link 17 9,176,313 9,178,713 RGD:9068941
G HP1BP3 heterochromatin protein 1 binding protein 3 JBrowse link 1 20,736,259 20,780,690 RGD:9068941
G HS6ST1 heparan sulfate 6-O-sulfotransferase 1 JBrowse link 2B 128,935,748 128,961,536 RGD:9068941
G HSF4 heat shock transcription factor 4 JBrowse link 16 66,897,868 66,904,640 RGD:9068941
G HSPB3 heat shock protein family B (small) member 3 JBrowse link 5 61,190,450 61,191,220 RGD:9068941
G IFI16 interferon gamma inducible protein 16 JBrowse link 1 138,152,328 138,203,424 RGD:9068941
G IK IK cytokine JBrowse link 5 142,129,130 142,143,393 RGD:9068941
G IL15 interleukin 15 JBrowse link 4 145,307,339 145,416,622 RGD:9068941
G IL16 interleukin 16 JBrowse link 15 79,137,002 79,250,861 RGD:9068941
G INPPL1 inositol polyphosphate phosphatase like 1 JBrowse link 11 70,527,525 70,540,623 RGD:9068941
G ITPKC inositol-trisphosphate 3-kinase C JBrowse link 19 46,267,598 46,292,236 RGD:9068941
G JADE1 jade family PHD finger 1 JBrowse link 4 132,271,559 132,336,620 RGD:9068941
G KAT6A lysine acetyltransferase 6A JBrowse link 8 38,622,419 38,742,273 RGD:9068941
G KAZN kazrin, periplakin interacting protein JBrowse link 1 14,740,009 15,255,377 RGD:9068941
G KIF22 kinesin family member 22 JBrowse link 16 30,161,058 30,176,389 RGD:9068941
G KMT2E lysine methyltransferase 2E JBrowse link 7 109,734,825 109,832,851 RGD:9068941
G LHPP phospholysine phosphohistidine inorganic pyrophosphate phosphatase JBrowse link 10 125,288,085 125,438,338 RGD:9068941
G LIMK1 LIM domain kinase 1 JBrowse link 7 81,233,453 81,271,282 RGD:9068941
G LMNA lamin A/C JBrowse link 1 135,253,700 135,311,542 RGD:9068941
G LOC100971027 ubiquitin-conjugating enzyme E2 R1 JBrowse link 19 480,279 512,173 RGD:9068941
G LOC100977984 RNA-binding protein 4 JBrowse link 11 65,319,464 65,349,183 RGD:9068941
G LOC100994157 histone H2AX JBrowse link 11 117,862,383 117,862,841 RGD:9068941
G LPXN leupaxin JBrowse link 11 57,242,445 57,294,282 RGD:9068941
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor JBrowse link 17 49,686,554 49,723,092 RGD:9068941
G MAGOH mago homolog, exon junction complex subunit JBrowse link 1 54,099,198 54,111,147 RGD:9068941
G MAML1 mastermind like transcriptional coactivator 1 JBrowse link 5 182,203,371 182,242,296 RGD:9068941
G MAML2 mastermind like transcriptional coactivator 2 JBrowse link 11 94,509,513 94,875,263 RGD:9068941
G MAML3 mastermind like transcriptional coactivator 3 JBrowse link 4 143,389,048 143,824,445 RGD:9068941
G MAPK14 mitogen-activated protein kinase 14 JBrowse link 6 36,788,233 36,871,114 RGD:9068941
G MAPT microtubule associated protein tau JBrowse link 17 11,458,159 11,590,626 RGD:9068941
G MBD1 methyl-CpG binding domain protein 1 JBrowse link 18 46,996,905 47,009,831 RGD:9068941
G MBD4 methyl-CpG binding domain 4, DNA glycosylase JBrowse link 3 133,842,156 133,851,450 RGD:9068941
G MECOM MDS1 and EVI1 complex locus JBrowse link 3 174,154,814 174,731,344 RGD:9068941
G MEF2C myocyte enhancer factor 2C JBrowse link 5 26,620,837 26,786,426 RGD:9068941
G MEOX2 mesenchyme homeobox 2 JBrowse link 7 15,598,460 15,673,935 RGD:9068941
G METTL3 methyltransferase like 3 JBrowse link 14 20,392,665 20,405,906 RGD:9068941
G MOCS2 molybdenum cofactor synthesis 2 JBrowse link 5 62,539,208 62,550,926 RGD:9068941
G MORF4L1 mortality factor 4 like 1 JBrowse link 15 76,803,907 76,852,970 RGD:9068941
G MSL1 MSL complex subunit 1 JBrowse link 17 17,373,780 17,387,329 RGD:9068941
G MSX2 msh homeobox 2 JBrowse link 5 176,968,315 176,974,679 RGD:9068941
G MTREX Mtr4 exosome RNA helicase JBrowse link 5 60,227,431 60,345,303 RGD:9068941
G NAMPT nicotinamide phosphoribosyltransferase JBrowse link 7 110,952,876 110,989,233 RGD:9068941
G NCAPG2 non-SMC condensin II complex subunit G2 JBrowse link 7 161,905,762 161,977,093 RGD:9068941
G NCBP3 nuclear cap binding subunit 3 JBrowse link 17 3,845,462 3,888,382 RGD:9068941
G NDUFB1 NADH:ubiquinone oxidoreductase subunit B1 JBrowse link 14 92,093,381 92,099,244 RGD:9068941
G NEK6 NIMA related kinase 6 JBrowse link 9 123,900,131 123,994,658 RGD:9068941
G NFATC4 nuclear factor of activated T cells 4 JBrowse link 14 23,267,667 23,279,249 RGD:9068941
G NFKBIZ NFKB inhibitor zeta JBrowse link 3 105,616,645 105,628,300 RGD:9068941
G NOC3L NOC3 like DNA replication regulator JBrowse link 10 94,561,532 94,609,405 RGD:9068941
G NONO non-POU domain containing octamer binding JBrowse link X 70,602,456 70,619,937 RGD:9068941
G NR0B1 nuclear receptor subfamily 0 group B member 1 JBrowse link X 30,459,527 30,464,652 RGD:9068941
G NR3C1 nuclear receptor subfamily 3 group C member 1 JBrowse link 5 144,741,452 144,865,341 RGD:9068941
G NR4A2 nuclear receptor subfamily 4 group A member 2 JBrowse link 2B 160,828,823 160,837,162 RGD:9068941
G NRDE2 NRDE-2, necessary for RNA interference, domain containing JBrowse link 14 90,247,035 90,300,705 RGD:9068941
G NRIP1 nuclear receptor interacting protein 1 JBrowse link 21 15,061,717 15,165,953 RGD:9068941
G NSL1 NSL1 component of MIS12 kinetochore complex JBrowse link 1 193,156,985 193,219,655 RGD:9068941
G NSRP1 nuclear speckle splicing regulatory protein 1 JBrowse link 17 27,100,683 27,171,202 RGD:9068941
G NUAK2 NUAK family kinase 2 JBrowse link 1 185,197,675 185,217,264 RGD:9068941
G NUGGC nuclear GTPase, germinal center associated JBrowse link 8 24,500,131 24,551,201 RGD:9068941
G NXF1 nuclear RNA export factor 1 JBrowse link 11 61,501,541 61,514,943 RGD:9068941
G NXT1 nuclear transport factor 2 like export factor 1 JBrowse link 20 23,643,785 23,647,856 RGD:9068941
G OGG1 8-oxoguanine DNA glycosylase JBrowse link 3 9,940,955 9,972,658 RGD:9068941
G OIP5 Opa interacting protein 5 JBrowse link 15 38,494,534 38,517,304 RGD:9068941
G OSGEP O-sialoglycoprotein endopeptidase JBrowse link 14 19,373,836 19,381,888 RGD:9068941
G PACSIN2 protein kinase C and casein kinase substrate in neurons 2 JBrowse link 22 41,908,922 42,052,327 RGD:9068941
G PARN poly(A)-specific ribonuclease JBrowse link 16 14,787,881 14,977,786 RGD:9068941
G PASD1 PAS domain containing repressor 1 JBrowse link X 151,099,674 151,212,970 RGD:9068941
G PATL1 PAT1 homolog 1, processing body mRNA decay factor JBrowse link 11 58,311,230 58,342,561 RGD:9068941
G PCBP1 poly(rC) binding protein 1 JBrowse link 2A 71,260,610 71,262,047 RGD:9068941
G PDX1 pancreatic and duodenal homeobox 1 JBrowse link 13 27,545,855 27,553,118 RGD:9068941
G PHF5A PHD finger protein 5A JBrowse link 22 40,441,275 40,450,174 RGD:9068941
G PHF7 PHD finger protein 7 JBrowse link 3 53,582,136 53,595,203 RGD:9068941
G PIAS1 protein inhibitor of activated STAT 1 JBrowse link 15 65,276,530 65,410,105 RGD:9068941
G PIAS2 protein inhibitor of activated STAT 2 JBrowse link 18 43,622,455 43,728,675 RGD:9068941
G PIAS3 protein inhibitor of activated STAT 3 JBrowse link 1 113,758,338 113,769,496 RGD:9068941
G PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 JBrowse link 19 10,053,733 10,067,343 RGD:9068941
G PIP5K1A phosphatidylinositol-4-phosphate 5-kinase type 1 alpha JBrowse link 1 130,195,974 130,246,198 RGD:9068941
G PLAG1 PLAG1 zinc finger JBrowse link 8 49,978,292 50,028,591 RGD:9068941
G PLCB1 phospholipase C beta 1 JBrowse link 20 7,887,773 8,636,019 RGD:9068941
G PLRG1 pleiotropic regulator 1 JBrowse link 4 158,719,568 158,735,103 RGD:9068941
G PNISR PNN interacting serine and arginine rich protein JBrowse link 6 101,121,919 101,148,653 RGD:9068941
G PNN pinin, desmosome associated protein JBrowse link 14 38,300,782 38,308,523 RGD:9068941
G POLDIP3 DNA polymerase delta interacting protein 3 JBrowse link 22 41,631,447 41,662,899 RGD:9068941
G POLI DNA polymerase iota JBrowse link 18 50,990,816 51,043,658 RGD:9068941
G POLR2D RNA polymerase II subunit D JBrowse link 2B 128,511,396 128,523,030 RGD:9068941
G POLR3D RNA polymerase III subunit D JBrowse link 8 18,429,013 18,435,060 RGD:9068941
G POMP proteasome maturation protein JBrowse link 13 28,286,500 28,305,990 RGD:9068941
G POU4F2 POU class 4 homeobox 2 JBrowse link 4 150,626,392 150,629,961 RGD:9068941
G PPIE peptidylprolyl isomerase E JBrowse link 1 40,355,598 40,373,495 RGD:9068941
G PPIG peptidylprolyl isomerase G JBrowse link 2B 174,322,609 174,379,281 RGD:9068941
G PPIH peptidylprolyl isomerase H JBrowse link 1 43,336,039 43,354,609 RGD:9068941
G PPP1CC protein phosphatase 1 catalytic subunit gamma JBrowse link 12 111,682,248 111,705,658 RGD:9068941
G PPP1R16B protein phosphatase 1 regulatory subunit 16B JBrowse link 20 36,236,924 36,354,329 RGD:9068941
G PPP1R8 protein phosphatase 1 regulatory subunit 8 JBrowse link 1 28,133,265 28,153,678 RGD:9068941
G PPP4R3A protein phosphatase 4 regulatory subunit 3A JBrowse link 14 91,429,512 91,481,006 RGD:9068941
G PPP4R3B protein phosphatase 4 regulatory subunit 3B JBrowse link 2A 56,842,926 56,914,393 RGD:9068941
G PQBP1 polyglutamine binding protein 1 JBrowse link X 49,046,351 49,058,587 RGD:9068941
G PRCC proline rich mitotic checkpoint control factor JBrowse link 1 135,932,974 135,966,483 RGD:9068941
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 5 74,627,844 74,666,505 RGD:9068941
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 1 57,639,731 57,702,227 RGD:9068941
G PRKACA protein kinase cAMP-activated catalytic subunit alpha JBrowse link 19 14,385,183 14,406,205 RGD:9068941
G PRKN parkin RBR E3 ubiquitin protein ligase JBrowse link 6 164,498,420 165,678,904 RGD:9068941
G PRPF18 pre-mRNA processing factor 18 JBrowse link 10 13,915,987 13,959,812 RGD:9068941
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 59,594,508 59,610,544 RGD:9068941
G PRPF3 pre-mRNA processing factor 3 JBrowse link 1 129,317,223 129,348,430 RGD:9068941
G PRPF31 pre-mRNA processing factor 31 JBrowse link 19 59,891,070 59,907,159 RGD:9068941
G PRPF4 pre-mRNA processing factor 4 JBrowse link 9 112,745,455 112,763,725 RGD:9068941
G PRPF40A pre-mRNA processing factor 40 homolog A JBrowse link 2B 157,189,945 157,256,184 RGD:9068941
G PRPF40B pre-mRNA processing factor 40 homolog B JBrowse link 12 39,998,264 40,020,381 RGD:9068941
G PRPF4B pre-mRNA processing factor 4B JBrowse link 6 4,044,456 4,088,226 RGD:9068941
G PRPF6 pre-mRNA processing factor 6 JBrowse link 20 61,899,076 61,948,088 RGD:9068941
G PRPF8 pre-mRNA processing factor 8 JBrowse link 17 1,532,579 1,565,254 RGD:9068941
G PSKH1 protein serine kinase H1 JBrowse link 16 67,637,855 67,658,256 RGD:9068941
G PSME4 proteasome activator subunit 4 JBrowse link 2A 54,919,092 55,024,551 RGD:9068941
G PSPC1 paraspeckle component 1 JBrowse link 13 19,319,242 19,424,074 RGD:9068941
G PYHIN1 pyrin and HIN domain family member 1 JBrowse link 1 138,081,611 138,127,115 RGD:9068941
G RAF1 Raf-1 proto-oncogene, serine/threonine kinase JBrowse link 3 12,853,415 12,932,871 RGD:9068941
G RBBP6 RB binding protein 6, ubiquitin ligase JBrowse link 16 24,786,170 24,819,408 RGD:9068941
G RBM10 RNA binding motif protein 10 JBrowse link X 47,440,586 47,481,418 RGD:9068941
G RBM11 RNA binding motif protein 11 JBrowse link 21 14,309,922 14,322,142 RGD:9068941
G RBM15 RNA binding motif protein 15 JBrowse link 1 127,320,147 127,354,537 RGD:9068941
G RBM15B RNA binding motif protein 15B JBrowse link 3 52,555,251 52,562,454 RGD:9068941
G RBM19 RNA binding motif protein 19 JBrowse link 12 114,802,909 114,946,296 RGD:9068941
G RBM25 RNA binding motif protein 25 JBrowse link 14 72,498,805 72,563,611 RGD:9068941
G RBM27 RNA binding motif protein 27 JBrowse link 5 147,666,510 147,751,458 RGD:9068941
G RBM39 RNA binding motif protein 39 JBrowse link 20 33,151,973 33,191,072 RGD:9068941
G RBM4B RNA binding motif protein 4B JBrowse link 11 65,345,796 65,358,468 RGD:9068941
G RBM8A RNA binding motif protein 8A JBrowse link 1 113,834,110 113,839,429 RGD:9068941
G RCHY1 ring finger and CHY zinc finger domain containing 1 JBrowse link 4 54,526,197 54,561,054 RGD:9068941
G REXO4 REX4 homolog, 3'-5' exonuclease JBrowse link 9 133,140,392 133,152,413 RGD:9068941
G RFXAP regulatory factor X associated protein JBrowse link 13 36,461,048 36,470,935 RGD:9068941
G RING1 ring finger protein 1 JBrowse link 6 33,895,631 33,899,734 RGD:9068941
G RMI2 RecQ mediated genome instability 2 JBrowse link 16 11,507,406 11,513,561 RGD:9068941
G RNF113A ring finger protein 113A JBrowse link X 119,328,861 119,330,150 RGD:9068941
G RNF34 ring finger protein 34 JBrowse link 12 122,373,125 122,396,579 RGD:9068941
G RREB1 ras responsive element binding protein 1 JBrowse link 6 7,160,933 7,356,556 RGD:9068941
G RSRC1 arginine and serine rich coiled-coil 1 JBrowse link 3 163,203,152 163,561,997 RGD:9068941
G RUFY1 RUN and FYVE domain containing 1 JBrowse link 5 181,978,596 182,039,825 RGD:9068941
G S100PBP S100P binding protein JBrowse link 1 33,294,723 33,335,495 RGD:9068941
G SAP130 Sin3A associated protein 130 JBrowse link 2B 128,609,262 128,696,505 RGD:9068941
G SAP18 Sin3A associated protein 18 JBrowse link 13 20,776,818 20,785,533 RGD:9068941
G SARNP SAP domain containing ribonucleoprotein JBrowse link 12 33,818,823 33,879,358 RGD:9068941
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 11 64,654,470 64,670,720 RGD:9068941
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 109,490,261 109,529,091 RGD:9068941
G SCNM1 sodium channel modifier 1 JBrowse link 1 130,163,855 130,166,728 RGD:9068941
G SDCBP2 syndecan binding protein 2 JBrowse link 20 1,231,964 1,252,081 RGD:9068941
G SDE2 SDE2 telomere maintenance homolog JBrowse link 1 206,441,517 206,457,679 RGD:9068941
G SERPINB13 serpin family B member 13 JBrowse link 18 60,258,085 60,270,607 RGD:9068941
G SETD1A SET domain containing 1A, histone lysine methyltransferase JBrowse link 16 31,323,645 31,352,295 RGD:9068941
G SETD1B SET domain containing 1B, histone lysine methyltransferase JBrowse link 12 122,777,252 122,806,628 RGD:9068941
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 29,171,654 29,194,882 RGD:9068941
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,219,326 2,231,343 RGD:9068941
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 38,578,225 38,612,009 RGD:9068941
G SF3B1 splicing factor 3b subunit 1 JBrowse link 2B 202,530,200 202,573,346 RGD:9068941
G SF3B2 splicing factor 3b subunit 2 JBrowse link 11 64,743,629 64,759,772 RGD:9068941
G SFMBT2 Scm like with four mbt domains 2 JBrowse link 10 7,167,086 7,419,939 RGD:9068941
G SFPQ splicing factor proline and glutamine rich JBrowse link 1 35,624,862 35,641,551 RGD:9068941
G SGK1 serum/glucocorticoid regulated kinase 1 JBrowse link 6 136,033,851 136,180,121 RGD:9068941
G SLC2A4RG SLC2A4 regulator JBrowse link 20 61,664,191 61,667,699 RGD:9068941
G SLC34A1 solute carrier family 34 member 1 JBrowse link 5 179,748,492 179,762,804 RGD:9068941
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 162,486,743 162,504,316 RGD:9068941
G SMC4 structural maintenance of chromosomes 4 JBrowse link 3 165,469,567 165,504,967 RGD:9068941
G SMC5 structural maintenance of chromosomes 5 JBrowse link 9 69,016,716 69,112,550 RGD:9068941
G SMC6 structural maintenance of chromosomes 6 JBrowse link 2A 17,774,590 17,861,920 RGD:9068941
G SMNDC1 survival motor neuron domain containing 1 JBrowse link 10 110,334,594 110,346,882 RGD:9068941
G SMU1 SMU1 DNA replication regulator and spliceosomal factor JBrowse link 9 33,627,765 33,659,530 RGD:9068941
G SMURF2 SMAD specific E3 ubiquitin protein ligase 2 JBrowse link 17 63,731,380 63,809,298 RGD:9068941
G SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 JBrowse link 1 31,559,860 31,597,076 RGD:9068941
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 19 55,021,402 55,044,351 RGD:9068941
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 15 99,289,668 99,303,839 RGD:9068941
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 20 16,670,823 16,682,418 RGD:9068941
G SNURF SNRPN upstream reading frame JBrowse link 15 22,347,166 22,371,062 RGD:9068941
G SNW1 SNW domain containing 1 JBrowse link 14 77,472,381 77,517,314 RGD:9068941
G SON SON DNA and RNA binding protein JBrowse link 21 33,282,691 33,317,063 RGD:9068941
G SPOP speckle type BTB/POZ protein JBrowse link 17 48,417,634 48,495,725 RGD:9068941
G SPRTN SprT-like N-terminal domain JBrowse link 1 211,914,100 211,931,093 RGD:9068941
G SREK1 splicing regulatory glutamic acid and lysine rich protein 1 JBrowse link 5 49,382,815 49,420,912 RGD:9068941
G SRP54 signal recognition particle 54 JBrowse link 14 33,920,330 33,966,023 RGD:9068941
G SRRM1 serine and arginine repetitive matrix 1 JBrowse link 1 24,821,565 24,850,997 RGD:9068941
G SRRM2 serine/arginine repetitive matrix 2 JBrowse link 16 2,865,810 2,884,902 RGD:9068941
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 56,937,295 56,944,874 RGD:9068941
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 24,149,423 24,165,057 RGD:9068941
G SRSF11 serine and arginine rich splicing factor 11 JBrowse link 1 71,426,668 71,472,580 RGD:9068941
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 90,244,345 90,258,075 RGD:9068941
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 17 76,375,957 76,379,258 RGD:9068941
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 6 37,352,484 37,362,196 RGD:9068941
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,444,263 29,490,360 RGD:9068941
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,230,730 69,236,596 RGD:9068941
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 40,888,396 40,892,152 RGD:9068941
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2A 39,536,722 39,545,562 RGD:9068941
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 121,417,557 121,425,708 RGD:9068941
G STK17A serine/threonine kinase 17a JBrowse link 7 40,671,446 40,713,024 RGD:9068941
G STK19 serine/threonine kinase 19 JBrowse link 6 32,519,250 32,526,782 RGD:9068941
G SUMO1 small ubiquitin like modifier 1 JBrowse link 2B 207,613,649 207,645,590 RGD:9068941
G SURF2 surfeit 2 JBrowse link 9 133,091,321 133,096,052 RGD:9068941
G SYF2 SYF2 pre-mRNA splicing factor JBrowse link 1 25,397,241 25,406,817 RGD:9068941
G SYNPO2L synaptopodin 2 like JBrowse link 10 72,648,952 72,660,184 RGD:9068941
G TAB1 TGF-beta activated kinase 1 (MAP3K7) binding protein 1 JBrowse link 22 38,122,835 38,158,015 RGD:9068941
G TAF5L TATA-box binding protein associated factor 5 like JBrowse link 1 210,168,370 210,200,903 RGD:9068941
G TAP2 transporter 2, ATP binding cassette subfamily B member JBrowse link 6 33,513,321 33,523,780 RGD:9068941
G TARDBP TAR DNA binding protein JBrowse link 1 10,996,006 11,008,732 RGD:9068941
G TBXA2R thromboxane A2 receptor JBrowse link 19 3,572,454 3,581,924 RGD:9068941
G TCF12 transcription factor 12 JBrowse link 15 54,200,383 54,570,440 RGD:9068941
G TCIM transcriptional and immune response regulator JBrowse link 8 36,854,973 36,856,432 RGD:9068941
G TENM1 teneurin transmembrane protein 1 JBrowse link X 123,743,454 124,106,221 RGD:9068941
G TEPSIN TEPSIN adaptor related protein complex 4 accessory protein JBrowse link 17 81,382,488 81,393,132 RGD:9068941
G TERT telomerase reverse transcriptase JBrowse link 5 1,300,397 1,338,241 RGD:9068941
G TFIP11 tuftelin interacting protein 11 JBrowse link 22 25,276,657 25,296,310 RGD:9068941
G THAP7 THAP domain containing 7 JBrowse link 22 19,713,740 19,716,088 RGD:9068941
G THOC1 THO complex 1 JBrowse link 18 17,692,797 17,742,572 RGD:9068941
G THOC2 THO complex 2 JBrowse link X 122,979,547 123,110,897 RGD:9068941
G THOC3 THO complex 3 JBrowse link 5 178,205,744 178,214,684 RGD:9068941
G THOC6 THO complex 6 JBrowse link 16 3,138,217 3,141,878 RGD:9068941
G THOC7 THO complex 7 JBrowse link 3 65,117,215 65,146,885 RGD:9068941
G THRAP3 thyroid hormone receptor associated protein 3 JBrowse link 1 36,679,221 36,742,694 RGD:9068941
G TIMM50 translocase of inner mitochondrial membrane 50 JBrowse link 19 45,126,266 45,136,005 RGD:9068941
G TKT transketolase JBrowse link 3 54,389,549 54,420,704 RGD:9068941
G TMEM179B transmembrane protein 179B JBrowse link 11 61,498,409 61,499,816 RGD:9068941
G TOE1 target of EGR1, exonuclease JBrowse link 1 46,000,974 46,005,279 RGD:9068941
G TOPORS TOP1 binding arginine/serine rich protein JBrowse link 9 33,124,730 33,136,923 RGD:9068941
G TRIM22 tripartite motif containing 22 JBrowse link 11 5,504,864 5,526,730 RGD:9068941
G TRIM69 tripartite motif containing 69 JBrowse link 15 41,861,525 41,893,069 RGD:9068941
G TRIP11 thyroid hormone receptor interactor 11 JBrowse link 14 91,945,392 92,019,231 RGD:9068941
G TRIP12 thyroid hormone receptor interactor 12 JBrowse link 2B 235,817,633 235,979,780 RGD:9068941
G TUT1 terminal uridylyl transferase 1, U6 snRNA-specific JBrowse link 11 61,287,375 61,303,784 RGD:9068941
G U2AF1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 21 42,707,738 42,719,086 RGD:9068941
G U2AF1L4 U2 small nuclear RNA auxiliary factor 1 like 4 JBrowse link 19 41,406,661 41,409,548 RGD:9068941
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 61,386,062 61,406,582 RGD:9068941
G UNC45A unc-45 myosin chaperone A JBrowse link 15 88,820,455 88,844,502 RGD:9068941
G USP36 ubiquitin specific peptidase 36 JBrowse link 17 78,416,541 78,461,683 RGD:9068941
G VIRMA vir like m6A methyltransferase associated JBrowse link 8 93,054,313 93,118,285 RGD:9068941
G VPS72 vacuolar protein sorting 72 homolog JBrowse link 1 130,174,051 130,187,785 RGD:9068941
G WAC WW domain containing adaptor with coiled-coil JBrowse link 10 29,042,331 29,130,597 RGD:9068941
G WBP4 WW domain binding protein 4 JBrowse link 13 40,852,879 40,875,182 RGD:9068941
G WRN WRN RecQ like helicase JBrowse link 8 27,541,145 27,679,855 RGD:9068941
G WT1 WT1 transcription factor JBrowse link 11 32,238,720 32,282,879 RGD:9068941
G WTAP WT1 associated protein JBrowse link 6 162,620,947 162,650,683 RGD:9068941
G YLPM1 YLP motif containing 1 JBrowse link 14 74,160,705 74,233,548 RGD:9068941
G YTHDC1 YTH domain containing 1 JBrowse link 4 62,095,953 62,132,609 RGD:9068941
G ZBTB16 zinc finger and BTB domain containing 16 JBrowse link 11 112,780,446 112,977,164 RGD:9068941
G ZBTB18 zinc finger and BTB domain containing 18 JBrowse link 1 225,042,282 225,050,259 RGD:9068941
G ZC3H13 zinc finger CCCH-type containing 13 RGD:9068941
G ZC3H14 zinc finger CCCH-type containing 14 JBrowse link 14 88,540,482 88,592,146 RGD:9068941
G ZC3H18 zinc finger CCCH-type containing 18 JBrowse link 16 88,944,521 89,005,199 RGD:9068941
G ZCCHC12 zinc finger CCHC-type containing 12 JBrowse link X 118,297,824 118,301,054 RGD:9068941
G ZCCHC18 zinc finger CCHC-type containing 18 JBrowse link X 103,615,135 103,618,442 RGD:9068941
G ZNF106 zinc finger protein 106 JBrowse link 15 39,529,324 39,608,427 RGD:9068941
G ZNF217 zinc finger protein 217 JBrowse link 20 51,027,471 51,066,274 RGD:9068941
G ZNF638 zinc finger protein 638 JBrowse link 2A 72,821,449 72,976,090 RGD:9068941
G ZNF830 zinc finger protein 830 JBrowse link 17 22,115,803 22,117,467 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 16507
    cellular anatomical entity 16366
      nuclear body 767
        nuclear speck 385
          omega speckle 0
Path 2
Term Annotations click to browse term
  cellular_component 16507
    cellular anatomical entity 16366
      organelle 12578
        intracellular organelle 11641
          intracellular membrane-bounded organelle 10026
            nucleus 6878
              nuclear lumen 4496
                nucleoplasm 3806
                  nuclear body 767
                    nuclear speck 385
                      omega speckle 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.