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ONTOLOGY REPORT - ANNOTATIONS


Term:antibiotic biosynthetic process
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Accession:GO:0017000 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
Synonyms:exact_synonym: antibiotic anabolism;   antibiotic biosynthesis;   antibiotic formation;   antibiotic synthesis


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acetate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acss1 acyl-CoA synthetase short-chain family member 1 JBrowse link 3 146,420,346 146,470,293 RGD:2317572
G Acss2 acyl-CoA synthetase short-chain family member 2 JBrowse link 3 151,032,925 151,075,856 RGD:2317572
formaldehyde biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:1600115
RGD:1624291
hydrogen peroxide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyba cytochrome b-245 alpha chain JBrowse link 19 55,249,634 55,257,824 RGD:2317869
G Cybb cytochrome b-245 beta chain JBrowse link X 14,578,330 14,610,049 RGD:1624291
RGD:1600115
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 JBrowse link 8 62,472,087 62,478,122 RGD:1624291
RGD:1600115
G Cyp1a2 cytochrome P450, family 1, subfamily a, polypeptide 2 JBrowse link 8 62,451,360 62,458,244 RGD:1624291
RGD:1600115
G Duox1 dual oxidase 1 JBrowse link 3 114,251,794 114,286,827 RGD:1600115
RGD:1624291
G Duox2 dual oxidase 2 JBrowse link 3 114,218,187 114,237,808 RGD:1600115
RGD:1624291
G Ncf1 neutrophil cytosolic factor 1 JBrowse link 12 25,497,104 25,506,300 RGD:1624291
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:1581090
RGD:1600115
RGD:1624291
RGD:1601266
RGD:634854
G Sod2 superoxide dismutase 2 JBrowse link 1 47,914,757 47,921,587 RGD:2291946
N-acetylneuraminate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gne glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase JBrowse link 5 59,511,738 59,553,421 RGD:1358725
G Nanp N-acetylneuraminic acid phosphatase JBrowse link 3 146,800,018 146,812,988 RGD:8554804
RGD:1624291
negative regulation of hydrogen peroxide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctns cystinosin, lysosomal cystine transporter JBrowse link 10 59,749,250 59,772,475 RGD:12910938
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:7349317
G Fyn FYN proto-oncogene, Src family tyrosine kinase JBrowse link 20 44,436,354 44,630,316 RGD:13601987
G Mpv17l MPV17 mitochondrial inner membrane protein like JBrowse link 10 3,321,488 3,359,219 RGD:1624291
G Stat3 signal transducer and activator of transcription 3 JBrowse link 10 88,790,401 88,842,263 RGD:8694322
positive regulation of hydrogen peroxide biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Duoxa1 dual oxidase maturation factor 1 JBrowse link 3 114,241,057 114,251,720 RGD:1600115
RGD:1624291
G Duoxa2 dual oxidase maturation factor 2 JBrowse link 3 114,236,718 114,240,086 RGD:1600115
RGD:1624291
G Mfn2 mitofusin 2 JBrowse link 5 164,684,244 164,715,414 RGD:12910740
G Mt-co2 mitochondrially encoded cytochrome c oxidase II JBrowse link MT 7,006 7,689 RGD:13506652
G Zfp13 zinc finger protein 13 JBrowse link 10 12,908,643 12,916,784 RGD:1624291
RGD:1600115
propionate biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acss1 acyl-CoA synthetase short-chain family member 1 JBrowse link 3 146,420,346 146,470,293 RGD:2317572
G Acss2 acyl-CoA synthetase short-chain family member 2 JBrowse link 3 151,032,925 151,075,856 RGD:2317572

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19312
    metabolic process 11535
      biosynthetic process 5935
        cellular biosynthetic process 5761
          antibiotic biosynthetic process 24
            (+)-lariciresinol biosynthetic process 0
            (R)-mandelate catabolic process to benzoate 0
            2-deoxystreptamine biosynthetic process 0
            N-acetylneuraminate biosynthetic process 2
            acetate biosynthetic process + 2
            actinorhodin biosynthetic process 0
            aminoglycoside antibiotic biosynthetic process + 0
            bacitracin A biosynthetic process 0
            beta-lactam antibiotic biosynthetic process + 0
            blasticidin S biosynthetic process 0
            candicidin biosynthetic process 0
            clavulanic acid biosynthetic process 0
            cordyol C biosynthetic process + 0
            enniatin biosynthetic process 0
            ethanol biosynthetic process + 0
            farnesol biosynthetic process 0
            formaldehyde biosynthetic process 1
            formate biosynthetic process 0
            fumagillin biosynthetic process + 0
            gliotoxin biosynthetic process + 0
            granaticin biosynthetic process 0
            hydrogen peroxide biosynthetic process + 19
            kaempferol O-glucoside biosynthetic process 0
            lincomycin biosynthetic process 0
            macrolide biosynthetic process + 0
            mandelate biosynthetic process 0
            monensin A biosynthetic process 0
            novobiocin biosynthetic process 0
            oxytetracycline biosynthetic process 0
            p-cresol biosynthetic process 0
            pentalenolactone biosynthetic process 0
            peptide antibiotic biosynthetic process + 0
            phenazine biosynthetic process + 0
            phenol biosynthetic process 0
            propionate biosynthetic process 2
            puromycin biosynthetic process 0
            pyocyanine biosynthetic process + 0
            quercetin biosynthetic process 0
            salicylic acid biosynthetic process + 0
            tetracenomycin C biosynthetic process 0
            tetracycline biosynthetic process 0
            tobramycin biosynthetic process 0
            vistamycin biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19312
    cellular process 17222
      cellular metabolic process 10566
        drug metabolic process 585
          antibiotic metabolic process 132
            antibiotic biosynthetic process 24
              (+)-lariciresinol biosynthetic process 0
              (R)-mandelate catabolic process to benzoate 0
              2-deoxystreptamine biosynthetic process 0
              N-acetylneuraminate biosynthetic process 2
              acetate biosynthetic process + 2
              actinorhodin biosynthetic process 0
              aminoglycoside antibiotic biosynthetic process + 0
              bacitracin A biosynthetic process 0
              beta-lactam antibiotic biosynthetic process + 0
              blasticidin S biosynthetic process 0
              candicidin biosynthetic process 0
              clavulanic acid biosynthetic process 0
              cordyol C biosynthetic process + 0
              enniatin biosynthetic process 0
              ethanol biosynthetic process + 0
              farnesol biosynthetic process 0
              formaldehyde biosynthetic process 1
              formate biosynthetic process 0
              fumagillin biosynthetic process + 0
              gliotoxin biosynthetic process + 0
              granaticin biosynthetic process 0
              hydrogen peroxide biosynthetic process + 19
              kaempferol O-glucoside biosynthetic process 0
              lincomycin biosynthetic process 0
              macrolide biosynthetic process + 0
              mandelate biosynthetic process 0
              monensin A biosynthetic process 0
              novobiocin biosynthetic process 0
              oxytetracycline biosynthetic process 0
              p-cresol biosynthetic process 0
              pentalenolactone biosynthetic process 0
              peptide antibiotic biosynthetic process + 0
              phenazine biosynthetic process + 0
              phenol biosynthetic process 0
              propionate biosynthetic process 2
              puromycin biosynthetic process 0
              pyocyanine biosynthetic process + 0
              quercetin biosynthetic process 0
              salicylic acid biosynthetic process + 0
              tetracenomycin C biosynthetic process 0
              tetracycline biosynthetic process 0
              tobramycin biosynthetic process 0
              vistamycin biosynthetic process 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.