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ONTOLOGY REPORT - ANNOTATIONS


Term:peptidyl-lysine hydroxylation
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Accession:GO:0017185 term browser browse the term
Definition:The hydroxylation of peptidyl-lysine to form peptidyl-hydroxylysine.


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peptidyl-lysine hydroxylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G P3h3 prolyl 3-hydroxylase 3 JBrowse link 4 157,359,331 157,375,186 RGD:1624291
G P3h4 prolyl 3-hydroxylase family member 4 (non-enzymatic) JBrowse link 10 88,318,231 88,325,326 RGD:1624291
RGD:13792537
RGD:1600115
G Plod1 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1 JBrowse link 5 164,720,629 164,747,071 RGD:1599090
RGD:13792537
RGD:1624291
RGD:734487
RGD:1600115
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 JBrowse link 8 99,977,334 100,059,736 RGD:1600115
RGD:13792537
RGD:1624291
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 JBrowse link 12 22,716,421 22,726,982 RGD:1600115
RGD:1624291
RGD:13792537
G Vipas39 VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog JBrowse link 6 111,271,283 111,296,013 RGD:1624291
RGD:1600115
G Vps33b VPS33B, late endosome and lysosome associated JBrowse link 1 142,060,955 142,083,955 RGD:1624291
peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase JBrowse link 10 105,781,752 105,787,803 RGD:1600115
RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19575
    metabolic process 11899
      primary metabolic process 10563
        protein metabolic process 6070
          protein modification process 3882
            cellular protein modification process 3882
              protein hydroxylation 29
                peptidyl-lysine hydroxylation 8
                  peptidyl-N6,N6,N6-trimethyl-lysine hydroxylation to peptidyl-N6,N6,N6-trimethyl-5-hydroxy-L-lysine 0
                  peptidyl-lysine dihydroxylation to 4,5-dihydroxy-L-lysine 0
                  peptidyl-lysine hydroxylation involved in bacterial-type EF-P lysine modification 0
                  peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine 0
                  peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine 1
Path 2
Term Annotations click to browse term
  biological_process 19575
    metabolic process 11899
      organic substance metabolic process 11297
        macromolecule metabolic process 9765
          cellular macromolecule metabolic process 8223
            cellular protein metabolic process 5386
              cellular protein modification process 3882
                peptidyl-amino acid modification 1289
                  peptidyl-lysine modification 397
                    peptidyl-lysine hydroxylation 8
                      peptidyl-N6,N6,N6-trimethyl-lysine hydroxylation to peptidyl-N6,N6,N6-trimethyl-5-hydroxy-L-lysine 0
                      peptidyl-lysine dihydroxylation to 4,5-dihydroxy-L-lysine 0
                      peptidyl-lysine hydroxylation involved in bacterial-type EF-P lysine modification 0
                      peptidyl-lysine hydroxylation to 4-hydroxy-L-lysine 0
                      peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine 1
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.