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ONTOLOGY REPORT - ANNOTATIONS


Term:peptide cross-linking
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Accession:GO:0018149 term browser browse the term
Definition:The formation of a covalent cross-link between or within protein chains.


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peptide cross-linking term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca7 ATP binding cassette subfamily A member 7 JBrowse link 7 12,742,433 12,762,423 RGD:1624291
RGD:1600115
G Anxa1 annexin A1 JBrowse link 1 237,893,983 237,910,002 RGD:1624291
RGD:1600115
G Col3a1 collagen type III alpha 1 chain JBrowse link 9 52,023,295 52,059,221 RGD:1624291
RGD:1600115
G Csta cystatin A JBrowse link 11 67,555,792 67,566,980 RGD:1624291
G Dsp desmoplakin JBrowse link 17 27,286,811 27,334,453 RGD:1624291
RGD:1600115
G Epb42 erythrocyte membrane protein band 4.2 JBrowse link 3 112,967,095 112,985,318 RGD:13792537
G Evpl envoplakin JBrowse link 10 105,100,538 105,116,802 RGD:1624291
G F13a1 coagulation factor XIII A1 chain JBrowse link 17 28,504,650 28,680,015 RGD:1624291
RGD:13792537
RGD:1600115
G Flg filaggrin JBrowse link 2 193,565,401 193,574,297 RGD:1624291
G Fn1 fibronectin 1 JBrowse link 9 78,900,111 78,969,018 RGD:1624291
RGD:1600115
G Ivl involucrin JBrowse link 2 192,761,171 192,773,346 RGD:1624291
G Krt1 keratin 1 JBrowse link 7 143,448,318 143,453,544 RGD:1600115
RGD:1624291
G Krt10 keratin 10 JBrowse link 10 87,296,445 87,301,307 RGD:1624291
RGD:1600115
G Krt2 keratin 2 JBrowse link 7 143,412,858 143,420,463 RGD:1600115
RGD:1624291
G Lor loricrin cornified envelope precursor protein JBrowse link 2 191,984,455 191,990,713 RGD:1624291
G Sprr1a small proline-rich protein 1A JBrowse link 2 192,669,143 192,671,059 RGD:1624291
RGD:1600115
G Sprr1b small proline-rich protein 1B JBrowse link 2 192,622,972 192,624,848 RGD:1624291
G Tgm1 transglutaminase 1 JBrowse link 15 34,378,136 34,393,150 RGD:61767
RGD:13792537
RGD:1624291
G Tgm2 transglutaminase 2 JBrowse link 3 154,597,165 154,627,257 RGD:13792537
RGD:1624291
G Tgm3 transglutaminase 3 JBrowse link 3 122,544,783 122,580,836 RGD:1600115
RGD:13792537
RGD:1624291
G Tgm4 transglutaminase 4 JBrowse link 8 132,117,279 132,157,485 RGD:1600115
RGD:13792537
G Tgm5 transglutaminase 5 JBrowse link 3 112,995,469 113,033,110 RGD:13792537
G Tgm6 transglutaminase 6 JBrowse link 3 122,644,183 122,680,054 RGD:13792537
G Tgm7 transglutaminase 7 JBrowse link 3 113,041,577 113,130,128 RGD:13792537
G Thbs1 thrombospondin 1 JBrowse link 3 109,862,120 109,873,466 RGD:1624291
RGD:1600115
isopeptide cross-linking via N6-(L-isoglutamyl)-L-lysine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tgm2 transglutaminase 2 JBrowse link 3 154,597,165 154,627,257 RGD:1579955
isopeptide cross-linking via N6-glycyl-L-lysine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rnf113a1 ring finger protein 113A1 JBrowse link X 123,806,922 123,808,049 RGD:1624291
peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bgn biglycan JBrowse link X 157,319,042 157,331,204 RGD:1624291
RGD:1600115
G Dcn decorin JBrowse link 7 38,742,250 38,782,282 RGD:1624291
RGD:1600115
G Egflam EGF-like, fibronectin type III and laminin G domains JBrowse link 2 56,503,002 56,681,334 RGD:1624291
RGD:1600115
G Mamdc2 MAM domain containing 2 JBrowse link 1 241,071,110 241,223,798 RGD:1624291
G Ndnf neuron-derived neurotrophic factor JBrowse link 4 96,528,830 96,565,780 RGD:1624291
G Prss34 protease, serine, 34 JBrowse link 10 14,656,812 14,658,569 RGD:1600115
G Spock2 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2 JBrowse link 20 29,654,926 29,679,927 RGD:1624291
RGD:1600115
G Spock3 SPARC/osteonectin, cwcv and kazal like domains proteoglycan 3 JBrowse link 16 28,372,067 28,716,762 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19312
    metabolic process 11535
      cellular metabolic process 10566
        cellular macromolecule metabolic process 8135
          cellular protein metabolic process 5303
            cellular protein modification process 3864
              peptide cross-linking 34
                isopeptide cross-linking + 2
                peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide 0
                peptide cross-linking via (2S,3S,6R)-3-methyl-lanthionine 0
                peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-D-allo-threonine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-D-phenylalanine 0
                peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine 0
                peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine 0
                peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine 0
                peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine 0
                peptide cross-linking via 3'-(3'-L-tyrosinyl)-L-tyrosine 0
                peptide cross-linking via 3'-(O4'-L-tyrosinyl)-L-tyrosine 0
                peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine 0
                peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one 0
                peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid 0
                peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone + 0
                peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone 0
                peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid 0
                peptide cross-linking via 4-amino-3-isothiazolidinone + 0
                peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone 0
                peptide cross-linking via 5-imidazolinone glycine + 0
                peptide cross-linking via L-cysteinyl-L-selenocysteine 0
                peptide cross-linking via L-cystine 0
                peptide cross-linking via L-histidyl-L-tyrosine + 0
                peptide cross-linking via L-lysinoalanine 0
                peptide cross-linking via N6-(L-isoaspartyl)-L-lysine + 0
                peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine 0
                peptide cross-linking via S-(2-aminovinyl)-D-cysteine 0
                peptide cross-linking via S-(L-isoglutamyl)-L-cysteine 0
                peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium 0
                peptide cross-linking via S-glycyl-L-cysteine 0
                peptide cross-linking via an oxazole or thiazole + 0
                peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan 8
                peptide cross-linking via lanthionine or 3-methyl-lanthionine + 0
Path 2
Term Annotations click to browse term
  biological_process 19312
    metabolic process 11535
      organic substance metabolic process 10932
        macromolecule metabolic process 9412
          protein metabolic process 5975
            protein modification process 3864
              cellular protein modification process 3864
                peptide cross-linking 34
                  isopeptide cross-linking + 2
                  peptide cross-linking via (2S,3S,4Xi,6R)-3-methyl-lanthionine sulfoxide 0
                  peptide cross-linking via (2S,3S,6R)-3-methyl-lanthionine 0
                  peptide cross-linking via 2'-(S-L-cysteinyl)-L-histidine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-D-allo-threonine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-D-phenylalanine 0
                  peptide cross-linking via 2-(S-L-cysteinyl)-L-phenylalanine 0
                  peptide cross-linking via 2-imino-glutamic acid 5-imidazolinone glycine 0
                  peptide cross-linking via 2-imino-glutaminyl-5-imidazolinone glycine 0
                  peptide cross-linking via 2-imino-methionine 5-imidazolinone glycine 0
                  peptide cross-linking via 3'-(3'-L-tyrosinyl)-L-tyrosine 0
                  peptide cross-linking via 3'-(O4'-L-tyrosinyl)-L-tyrosine 0
                  peptide cross-linking via 3'-(S-L-cysteinyl)-L-tyrosine 0
                  peptide cross-linking via 3-(2-methylthio)ethyl-6-(4-hydroxybenzylidene)-5-iminopiperazin-2-one 0
                  peptide cross-linking via 3-(S-L-cysteinyl)-L-aspartic acid 0
                  peptide cross-linking via 4'-(L-tryptophan)-L-tryptophyl quinone + 0
                  peptide cross-linking via 4'-(S-L-cysteinyl)-L-tryptophyl quinone 0
                  peptide cross-linking via 4-(S-L-cysteinyl)-L-glutamic acid 0
                  peptide cross-linking via 4-amino-3-isothiazolidinone + 0
                  peptide cross-linking via 5'-(N6-L-lysine)-L-topaquinone 0
                  peptide cross-linking via 5-imidazolinone glycine + 0
                  peptide cross-linking via L-cysteinyl-L-selenocysteine 0
                  peptide cross-linking via L-cystine 0
                  peptide cross-linking via L-histidyl-L-tyrosine + 0
                  peptide cross-linking via L-lysinoalanine 0
                  peptide cross-linking via N6-(L-isoaspartyl)-L-lysine + 0
                  peptide cross-linking via S-(2-aminovinyl)-3-methyl-D-cysteine 0
                  peptide cross-linking via S-(2-aminovinyl)-D-cysteine 0
                  peptide cross-linking via S-(L-isoglutamyl)-L-cysteine 0
                  peptide cross-linking via S-[5'-(L-tryptoph-6'-yl)-L-tyrosin-3'-yl]-L-methionin-S-ium 0
                  peptide cross-linking via S-glycyl-L-cysteine 0
                  peptide cross-linking via an oxazole or thiazole + 0
                  peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan 8
                  peptide cross-linking via lanthionine or 3-methyl-lanthionine + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.