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ONTOLOGY REPORT - ANNOTATIONS


Term:viral genome replication
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Accession:GO:0019079 term browser browse the term
Definition:Any process involved directly in viral genome replication, including viral nucleotide metabolism.
Synonyms:narrow_synonym: sigma virus replication
 broad_synonym: viral replication


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viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gas6 growth arrest specific 6 ISO
ISS
(PMID:21501828)
GO_REF:0000024
RGD
UniProt
PMID:21501828 GO_REF:0000024 NCBI chr16:81,213,364...81,243,824
Ensembl chr16:81,213,364...81,243,757
JBrowse link
G Grk2 G protein-coupled receptor kinase 2 ISO
IEA
(PMID:23029581)
GO_REF:0000107
RGD
Ensembl
PMID:23029581 GO_REF:0000107 NCBI chr 1:219,536,220...219,544,329
Ensembl chr 1:219,536,220...219,544,328
JBrowse link
G Kpna6 karyopherin subunit alpha 6 ISO MGI:MGI:3856636 (MGI:MGI:5898166|PMID:28189564) RGD PMID:28189564 MGI:MGI:5898166 NCBI chr 5:147,852,738...147,867,600
Ensembl chr 5:147,850,275...147,886,615
JBrowse link
G Vcp valosin-containing protein ISO (PMID:22379090) RGD PMID:22379090 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link
modulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifi27 interferon, alpha-inducible protein 27 ISO (PMID:27777077) RGD PMID:27777077 NCBI chr 6:127,327,959...127,334,430
Ensembl chr 6:127,327,959...127,334,428
JBrowse link
modulation by host of viral RNA genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxl2 F-box and leucine-rich repeat protein 2 ISO (PMID:15893726) RGD PMID:15893726 NCBI chr 8:122,240,393...122,290,439
Ensembl chr 8:122,243,016...122,311,431
JBrowse link
G Fmr1 FMRP translational regulator 1 IEA
ISO
GO_REF:0000107
(PMID:24514761)
Ensembl
RGD
PMID:24514761 GO_REF:0000107 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Phb prohibitin ISO (MGI:MGI:6436975|PMID:29324904) RGD PMID:29324904 MGI:MGI:6436975 NCBI chr10:83,476,107...83,488,878
Ensembl chr10:83,476,107...83,488,878
JBrowse link
G Vapb VAMP associated protein B and C ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
negative regulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl12 chemokine (C-C motif) ligand 12 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:69,476,866...69,478,416
Ensembl chr10:69,476,775...69,478,462
JBrowse link
G Ccnk cyclin K ISO (PMID:21555514) RGD PMID:21555514 NCBI chr 6:132,090,235...132,113,560
Ensembl chr 6:132,090,218...132,113,557
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 ISO MGI:MGI:3053078 (MGI:MGI:55926|PMID:6327825) RGD PMID:6327825 MGI:MGI:55926 NCBI chr 1:82,327,955...82,344,345
Ensembl chr 1:82,327,955...82,344,345
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked ISO (PMID:24380861) RGD PMID:24380861 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO
ISS
(MGI:MGI:5700304|PMID:16601681)
GO_REF:0000024
RGD
UniProt
PMID:16601681 GO_REF:0000024, MGI:MGI:5700304 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217
JBrowse link
G Prkn parkin RBR E3 ubiquitin protein ligase ISO (PMID:25244949) RGD PMID:25244949 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Vapa VAMP associated protein A ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 9:113,300,831...113,331,872
Ensembl chr 9:113,300,832...113,331,319
JBrowse link
G Vapb VAMP associated protein B and C ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO (PMID:23355615) RGD PMID:23355615 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
negative regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation-induced cytidine deaminase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,359,909...155,371,104
Ensembl chr 4:155,359,921...155,369,671
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 ISO
IBA
(PMID:18779051), (PMID:21835787)
PMID:21873635
RGD PMID:18779051, PMID:21835787, PMID:21873635 RGD:13792537 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Hmga2 high mobility group AT-hook 2 ISO
ISS
(PMID:17005673)
GO_REF:0000024
RGD
UniProt
PMID:17005673 GO_REF:0000024 NCBI chr 7:65,159,944...65,275,408
Ensembl chr 7:65,159,944...65,275,408
JBrowse link
G Inpp5k inositol polyphosphate-5-phosphatase K ISO (PMID:18774950) RGD PMID:18774950 NCBI chr10:63,775,639...63,796,879
Ensembl chr10:63,776,378...63,795,899
JBrowse link
G Morc2 MORC family CW-type zinc finger 2 ISO (PMID:29211708)
(MGI:MGI:6271895|PMID:29728365)
RGD PMID:29211708, PMID:29728365 MGI:MGI:6271895 NCBI chr14:83,889,138...83,930,263
Ensembl chr14:83,889,089...83,930,522
JBrowse link
G Mphosph8 M-phase phosphoprotein 8 ISS
ISO
GO_REF:0000024
(PMID:29211708)
UniProt
RGD
PMID:29211708 GO_REF:0000024 NCBI chr15:36,918,843...36,946,712
Ensembl chr15:36,918,843...36,946,708
JBrowse link
G Resf1 retroelement silencing factor 1 ISO (MGI:MGI:6271895|PMID:29728365) RGD PMID:29728365 MGI:MGI:6271895 NCBI chr 4:183,879,177...183,905,807
Ensembl chr 4:183,896,303...183,905,297
JBrowse link
G Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ISO (MGI:MGI:5440670|PMID:20164836), (MGI:MGI:6271895|PMID:29728365) RGD PMID:20164836, PMID:29728365 MGI:MGI:5440670, MGI:MGI:6271895 NCBI chr 2:196,495,867...196,527,412
Ensembl chr 2:196,495,867...196,527,127
JBrowse link
G Tasor transcription activation suppressor ISO (PMID:29211708) RGD PMID:29211708 NCBI chr16:3,050,506...3,108,168
Ensembl chr16:3,051,449...3,105,531
JBrowse link
G Trim28 tripartite motif-containing 28 ISO MGI:MGI:2143362 (MGI:MGI:3842857|PMID:19270682), (MGI:MGI:5440670|PMID:20164836) RGD PMID:19270682, PMID:20164836 MGI:MGI:3842857, MGI:MGI:5440670 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
negative regulation of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07015596.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr14:65,152,594...65,153,013 JBrowse link
G AABR07021463.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr13:73,661,131...73,661,553 JBrowse link
G Adar adenosine deaminase, RNA-specific ISO MGI:MGI:4941203 (MGI:MGI:4939544|PMID:21173229) RGD PMID:21173229 MGI:MGI:4939544 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 ISO (MGI:MGI:5486557|PMID:16378963) RGD PMID:16378963 MGI:MGI:5486557 NCBI chr 7:121,108,108...121,128,346
Ensembl chr 7:121,109,241...121,128,542
JBrowse link
G Banf1 BAF nuclear assembly factor 1 ISO (PMID:18005698) RGD PMID:18005698 NCBI chr 1:220,744,195...220,746,224
Ensembl chr 1:220,744,195...220,746,224
JBrowse link
G Bst2 bone marrow stromal cell antigen 2 ISO
ISS
(PMID:20943977)
(MGI:MGI:5437405|PMID:22284121), (MGI:MGI:5448513|PMID:21919738)
GO_REF:0000024
RGD
UniProt
PMID:20943977, PMID:21919738, PMID:22284121 GO_REF:0000024, MGI:MGI:5437405, MGI:MGI:5448513 NCBI chr16:19,938,781...19,942,353
Ensembl chr16:19,938,784...19,942,353
JBrowse link
G Ccl5 C-C motif chemokine ligand 5 ISO
IEA
(PMID:10490959)
GO_REF:0000107
RGD
Ensembl
PMID:10490959 GO_REF:0000107 NCBI chr10:70,739,764...70,744,303
Ensembl chr10:70,739,800...70,744,315
JBrowse link
G Eif2ak2 eukaryotic translation initiation factor 2-alpha kinase 2 IEA
ISO
ISS
GO_REF:0000107
(PMID:19189853), (PMID:19840259)
GO_REF:0000024
(MGI:MGI:5487533|PMID:20038207)
Ensembl
RGD
UniProt
PMID:19189853, PMID:19840259, PMID:20038207 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5487533 NCBI chr 6:1,428,845...1,466,193
Ensembl chr 6:1,428,834...1,466,201
JBrowse link
G Fam111a family with sequence similarity 111, member A ISO (PMID:23093934) RGD PMID:23093934 NCBI chr 1:229,003,778...229,019,532
Ensembl chr 1:229,003,961...229,019,527
JBrowse link
G Ifitm1 interferon induced transmembrane protein 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:213,765,825...213,767,841
Ensembl chr 1:213,766,758...213,767,815
JBrowse link
G Ifitm2 interferon induced transmembrane protein 2 ISO
IBA
(PMID:21253575)
PMID:21873635
RGD PMID:21253575, PMID:21873635 RGD:13792537 NCBI chr 1:213,750,219...213,751,399
Ensembl chr 1:213,750,192...213,751,405
JBrowse link
G Ifitm3 interferon induced transmembrane protein 3 ISO
IBA
(PMID:20943977), (PMID:21253575)
PMID:21873635
RGD PMID:20943977, PMID:21253575, PMID:21873635 RGD:13792537 NCBI chr 1:213,810,712...213,811,821
Ensembl chr 1:213,810,696...213,811,901
JBrowse link
G Ifitm6 interferon induced transmembrane protein 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:213,816,966...213,856,570
Ensembl chr 1:213,817,312...213,818,222
JBrowse link
G Ifnb1 interferon beta 1 ISO (PMID:19008854) RGD PMID:19008854 NCBI chr 5:106,865,192...106,865,746
Ensembl chr 5:106,865,192...106,865,746
JBrowse link
G Ilf3 interleukin enhancer binding factor 3 ISO
ISS
(MGI:MGI:4867319|PMID:21123651)
GO_REF:0000024
RGD
UniProt
PMID:21123651 GO_REF:0000024, MGI:MGI:4867319 NCBI chr 8:22,402,877...22,440,984
Ensembl chr 8:22,402,890...22,440,885
JBrowse link
G Isg15 ISG15 ubiquitin-like modifier ISO (PMID:19357168) RGD PMID:19357168 NCBI chr 5:173,624,862...173,629,124
Ensembl chr 5:173,624,310...173,626,248
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 ISO
IBA
(PMID:21036379)
PMID:21873635
RGD PMID:21036379, PMID:21873635 RGD:13792537 NCBI chr 1:140,602,553...140,608,892
Ensembl chr 1:140,601,791...140,608,946
JBrowse link
G LOC103689988 2'-5'-oligoadenylate synthase 1A-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:42,367,110...42,376,531
Ensembl chr12:42,367,535...42,376,426
JBrowse link
G Ltf lactotransferrin ISO (PMID:25193851) RGD PMID:25193851 NCBI chr 8:119,290,416...119,313,261
Ensembl chr 8:119,290,416...119,313,261
JBrowse link
G Mavs mitochondrial antiviral signaling protein ISO (PMID:20451243)
(MGI:MGI:4881394|PMID:20451243)
RGD PMID:20451243 MGI:MGI:4881394 NCBI chr 3:123,776,147...123,790,572
Ensembl chr 3:123,776,181...123,790,567
JBrowse link
G Mx2 MX dynamin like GTPase 2 IEA
ISO
GO_REF:0000107
(PMID:24500530)
(PMID:14687945), (PMID:15047845), (PMID:16202617)
Ensembl
RGD
PMID:14687945, PMID:15047845, PMID:16202617, PMID:24500530 GO_REF:0000107 NCBI chr11:38,035,306...38,066,185
Ensembl chr11:38,035,450...38,059,950
JBrowse link
G Oas1a 2'-5' oligoadenylate synthetase 1A ISO
IBA
(PMID:18931074), (PMID:19923450)
PMID:21873635
(PMID:20844035)
RGD PMID:18931074, PMID:19923450, PMID:20844035, PMID:21873635 RGD:13792537 NCBI chr12:41,200,680...41,211,393
Ensembl chr12:41,200,718...41,211,909
JBrowse link
G Oas1b 2-5 oligoadenylate synthetase 1B ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:41,255,762...41,266,430
Ensembl chr12:41,227,825...41,307,352
JBrowse link
G Oas1e 2'-5' oligoadenylate synthetase 1E IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,281,479...41,290,500
Ensembl chr12:41,281,559...41,290,497
JBrowse link
G Oas1g 2'-5' oligoadenylate synthetase 1G IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:42,343,103...42,355,139
Ensembl chr12:42,343,123...42,355,131
JBrowse link
G Oas1h 2 ' -5 ' oligoadenylate synthetase 1H IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,214,587...41,224,254
Ensembl chr12:41,214,587...41,224,254
JBrowse link
G Oas1i 2 ' -5 ' oligoadenylate synthetase 1I IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,155,489...41,167,501
Ensembl chr12:41,155,497...41,167,505
JBrowse link
G Oas2 2'-5' oligoadenylate synthetase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,341,417...41,363,124
Ensembl chr12:41,340,815...41,363,161
JBrowse link
G Oas3 2'-5'-oligoadenylate synthetase 3 ISO
IBA
IEA
(PMID:19056102), (PMID:19923450)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:19056102, PMID:19923450, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr12:41,313,081...41,368,217
Ensembl chr12:41,316,764...41,336,562
JBrowse link
G Oasl 2'-5'-oligoadenylate synthetase-like ISO
IBA
(PMID:18931074), (PMID:20074559)
PMID:21873635
RGD PMID:18931074, PMID:20074559, PMID:21873635 RGD:13792537 NCBI chr12:47,444,138...47,456,680
Ensembl chr12:47,444,104...47,456,894
JBrowse link
G Oasl2 2'-5' oligoadenylate synthetase-like 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:47,470,074...47,483,131
Ensembl chr12:47,469,598...47,482,961
JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 ISO (PMID:22176891) RGD PMID:22176891 NCBI chr 7:117,291,592...117,300,878
Ensembl chr 7:117,291,877...117,300,662
JBrowse link
G Plscr1 phospholipid scramblase 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5284800|PMID:15308695)
(PMID:15308695)
Ensembl
UniProt
RGD
PMID:15308695 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5284800 NCBI chr 8:99,625,523...99,645,882
Ensembl chr 8:99,625,545...99,725,217
JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:19264593) RGD PMID:19264593 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G RGD1561738 similar to interferon induced transmembrane protein 2 (1-8D) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:73,661,005...73,661,699 JBrowse link
G RGD1565332 similar to interferon induced transmembrane protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:65,152,594...65,153,013 JBrowse link
G Rnasel ribonuclease L ISO
IBA
(PMID:19923450)
PMID:21873635
RGD PMID:19923450, PMID:21873635 RGD:13792537 NCBI chr13:71,188,712...71,202,636
Ensembl chr13:71,192,142...71,202,625
JBrowse link
G Rsad2 radical S-adenosyl methionine domain containing 2 IEA
ISO
GO_REF:0000107
(MGI:MGI:5431072|PMID:21880757)
(PMID:21957124)
Ensembl
RGD
PMID:21880757, PMID:21957124 GO_REF:0000107, MGI:MGI:5431072 NCBI chr 6:45,655,947...45,669,083
Ensembl chr 6:45,655,954...45,669,148
JBrowse link
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26735137)
Ensembl
UniProt
RGD
PMID:26735137 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:21,890,214...21,896,045
Ensembl chr 8:21,890,319...21,896,031
JBrowse link
G Slpi secretory leukocyte peptidase inhibitor ISO (PMID:19333378) RGD PMID:19333378 NCBI chr 3:160,799,979...160,802,228
Ensembl chr 3:160,799,981...160,802,433
JBrowse link
G Srpk1 SRSF protein kinase 1 ISO (PMID:12417631) RGD PMID:12417631 NCBI chr20:5,829,412...5,865,877
Ensembl chr20:5,831,119...5,865,854
JBrowse link
G Srpk2 SRSF protein kinase 2 ISO (PMID:12417631) RGD PMID:12417631 NCBI chr 4:7,994,025...8,187,455
Ensembl chr 4:8,066,737...8,185,935
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:10490959) RGD PMID:10490959 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Trim6 tripartite motif containing 6 ISO (PMID:24882218)
(MGI:MGI:5645191|PMID:24882218)
RGD PMID:24882218 MGI:MGI:5645191 NCBI chr 1:169,410,084...169,423,305
Ensembl chr 1:169,410,115...169,423,283
JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 IDA
ISO
IEA
PMID:21876179
(PMID:21102435), (PMID:21876179)
GO_REF:0000107
RGD
Ensembl
PMID:21102435, PMID:21876179, PMID:21876179 GO_REF:0000107, RGD:8554819 NCBI chr 4:66,012,111...66,062,160
Ensembl chr 4:66,011,915...66,062,089
JBrowse link
negative stranded viral RNA replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg16l1 autophagy related 16-like 1 ISO
IBA
(MGI:MGI:5552992|PMID:24550300)
PMID:21873635
RGD PMID:24550300, PMID:21873635 MGI:MGI:5552992, RGD:13792537 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228
JBrowse link
G Atg16l2 autophagy related 16-like 2 ISO
IBA
(MGI:MGI:5552992|PMID:24550300)
PMID:21873635
RGD PMID:24550300, PMID:21873635 MGI:MGI:5552992, RGD:13792537 NCBI chr 1:166,401,271...166,415,078
Ensembl chr 1:166,401,271...166,413,564
JBrowse link
G Atg5 autophagy related 5 ISO
IEA
(MGI:MGI:5552992|PMID:24550300)
GO_REF:0000107
RGD
Ensembl
PMID:24550300 GO_REF:0000107, MGI:MGI:5552992 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140
JBrowse link
G Atg7 autophagy related 7 ISO (MGI:MGI:5552992|PMID:24550300) RGD PMID:24550300 MGI:MGI:5552992 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124
JBrowse link
positive regulation by host of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hspa8 heat shock protein family A (Hsp70) member 8 ISO (MGI:MGI:5787727|PMID:26581985) RGD PMID:26581985 MGI:MGI:5787727 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Nucks1 nuclear casein kinase and cyclin-dependent kinase substrate 1 ISO (PMID:25116364) RGD PMID:25116364 NCBI chr13:48,679,726...48,709,663
Ensembl chr13:48,679,774...48,705,575
JBrowse link
G Ppib peptidylprolyl isomerase B ISO (PMID:15989969) RGD PMID:15989969 NCBI chr 8:71,719,681...71,725,538
Ensembl chr 8:71,719,563...71,725,562
JBrowse link
G Stom stomatin ISO (MGI:MGI:5616479|PMID:25262680) RGD PMID:25262680 MGI:MGI:5616479 NCBI chr 3:14,515,576...14,538,199
Ensembl chr 3:14,514,868...14,538,241
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 ISO (PMID:17686842) RGD PMID:17686842 NCBI chr 3:147,772,006...147,790,946
Ensembl chr 3:147,772,165...147,789,158
JBrowse link
G Vapa VAMP associated protein A ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 9:113,300,831...113,331,872
Ensembl chr 9:113,300,832...113,331,319
JBrowse link
G Vapb VAMP associated protein B and C ISO (PMID:19515777) RGD PMID:19515777 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
G Ythdc2 YTH domain containing 2 ISO (PMID:21559518) RGD PMID:21559518 NCBI chr 1:182,072,386...182,141,399
Ensembl chr 1:182,085,899...182,140,570
JBrowse link
positive regulation of single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Top2a DNA topoisomerase II alpha IEA
ISO
GO_REF:0000107
(PMID:16712776)
Ensembl
RGD
PMID:16712776 GO_REF:0000107 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
G Top2b DNA topoisomerase II beta ISO (PMID:16712776) RGD PMID:16712776 NCBI chr15:10,262,972...10,319,741
Ensembl chr15:10,262,651...10,320,233
JBrowse link
positive regulation of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase, RNA-specific IEA
ISO
ISS
GO_REF:0000107
(PMID:18362360), (PMID:19651874)
GO_REF:0000024
(MGI:MGI:5447606|PMID:18362360)
Ensembl
RGD
UniProt
PMID:18362360, PMID:19651874 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5447606 NCBI chr 2:189,045,551...189,085,448
Ensembl chr 2:189,062,443...189,083,236
JBrowse link
G Adarb1 adenosine deaminase, RNA-specific, B1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21289159)
Ensembl
UniProt
RGD
PMID:21289159 GO_REF:0000024, GO_REF:0000107 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 ISO (PMID:23386060) RGD PMID:23386060 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Ddb1 damage-specific DNA binding protein 1 ISO
IEA
(PMID:23137809)
GO_REF:0000107
RGD
Ensembl
PMID:23137809 GO_REF:0000107 NCBI chr 1:226,657,561...226,683,356
Ensembl chr 1:226,657,561...226,683,347
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked ISO (PMID:20862261) RGD PMID:20862261 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 ISO (PMID:26567527) RGD PMID:26567527 NCBI chr12:24,365,941...24,438,088
Ensembl chr12:24,367,199...24,438,019
JBrowse link
G Hacd3 3-hydroxyacyl-CoA dehydratase 3 ISO (PMID:18160438) RGD PMID:18160438 NCBI chr 8:70,471,572...70,509,874
Ensembl chr 8:70,471,572...70,509,874
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator ISO (PMID:26735137) RGD PMID:26735137 NCBI chr10:43,435,738...43,501,186
Ensembl chr10:43,446,526...43,498,066
JBrowse link
G Notch1 notch receptor 1 ISO (MGI:MGI:5693363|PMID:21191019) RGD PMID:21191019 MGI:MGI:5693363 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 ISO (PMID:19264593) RGD PMID:19264593 NCBI chr13:53,750,470...53,870,288
Ensembl chr13:53,750,473...53,870,428
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 ISO (PMID:26735137) RGD PMID:26735137 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Pde12 phosphodiesterase 12 IEA
ISO
GO_REF:0000107
(PMID:15231837)
Ensembl
RGD
PMID:15231837 GO_REF:0000107 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Pkn2 protein kinase N2 ISO
IEA
(PMID:15364941)
GO_REF:0000107
RGD
Ensembl
PMID:15364941 GO_REF:0000107 NCBI chr 2:248,735,699...248,840,735
Ensembl chr 2:248,735,699...248,840,735
JBrowse link
G Ppara peroxisome proliferator activated receptor alpha ISO (PMID:22479552) RGD PMID:22479552 NCBI chr 7:126,618,872...126,687,282
Ensembl chr 7:126,619,196...126,681,752
JBrowse link
G Ppia peptidylprolyl isomerase A ISO (PMID:19932913) RGD PMID:19932913 NCBI chr14:86,673,775...86,677,443
Ensembl chr14:86,673,775...86,677,443
JBrowse link
G Ppid peptidylprolyl isomerase D ISO (PMID:19932913) RGD PMID:19932913 NCBI chr 2:178,354,830...178,366,843
Ensembl chr 2:178,354,890...178,366,685
JBrowse link
G Ppie peptidylprolyl isomerase E ISO (PMID:19932913) RGD PMID:19932913 NCBI chr 5:140,822,141...140,835,244
Ensembl chr 5:140,822,141...140,834,959
JBrowse link
G Ppih peptidylprolyl isomerase H ISO (PMID:19932913) RGD PMID:19932913 NCBI chr 5:138,343,934...138,361,743
Ensembl chr 5:138,352,916...138,361,702
JBrowse link
G Rad23a RAD23 homolog A, nucleotide excision repair protein ISO (PMID:20614012) RGD PMID:20614012 NCBI chr19:25,949,488...25,956,677
Ensembl chr19:25,949,490...25,955,391
JBrowse link
G Srpk1 SRSF protein kinase 1 ISO (PMID:20498328) RGD PMID:20498328 NCBI chr20:5,829,412...5,865,877
Ensembl chr20:5,831,119...5,865,854
JBrowse link
G Srpk2 SRSF protein kinase 2 ISO (PMID:20498328) RGD PMID:20498328 NCBI chr 4:7,994,025...8,187,455
Ensembl chr 4:8,066,737...8,185,935
JBrowse link
G Stau1 staufen double-stranded RNA binding protein 1 ISO (PMID:23907398) RGD PMID:23907398 NCBI chr 3:163,703,204...163,748,996
Ensembl chr 3:163,703,204...163,748,996
JBrowse link
G Tarbp2 TARBP2 subunit of RISC loading complex ISO
ISS
(PMID:11641396)
GO_REF:0000024
RGD
UniProt
PMID:11641396 GO_REF:0000024 NCBI chr 7:144,121,688...144,126,860
Ensembl chr 7:144,121,744...144,126,857
JBrowse link
G Tmem39a transmembrane protein 39a ISO (PMID:31849860) RGD PMID:31849860 NCBI chr11:64,723,181...64,752,514
Ensembl chr11:64,723,186...64,752,544
JBrowse link
G Trim38 tripartite motif containing 38 ISO (MGI:MGI:5441682|PMID:22539786) RGD PMID:22539786 MGI:MGI:5441682 NCBI chr17:43,600,006...43,607,879 JBrowse link
G Vapb VAMP associated protein B and C ISO
ISS
(PMID:16227268)
GO_REF:0000024
RGD
UniProt
PMID:16227268 GO_REF:0000024 NCBI chr 3:171,832,558...171,871,042
Ensembl chr 3:171,832,500...171,868,647
JBrowse link
regulation of viral genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator IEA
ISO
GO_REF:0000107
(MGI:MGI:3700400|PMID:16950491)
Ensembl
RGD
PMID:16950491 GO_REF:0000107, MGI:MGI:3700400 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Ddx5 DEAD-box helicase 5 IMP RGD PMID:19224332 RGD:5128521 NCBI chr10:94,979,759...94,988,461
Ensembl chr10:94,980,928...94,988,461
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3719397 (MGI:MGI:3718936|PMID:17613256) RGD PMID:17613256 MGI:MGI:3718936 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Mir24-2 microRNA 24-2 ISO (MGI:MGI:3718936|PMID:17613256) RGD PMID:17613256 MGI:MGI:3718936 NCBI chr19:25,318,863...25,318,970
Ensembl chr19:25,318,863...25,318,970
JBrowse link
G Mir93 microRNA 93 ISO (MGI:MGI:3718936|PMID:17613256) RGD PMID:17613256 MGI:MGI:3718936 NCBI chr12:19,307,543...19,307,629
Ensembl chr12:19,307,543...19,307,629
JBrowse link
G Ppia peptidylprolyl isomerase A ISO
ISS
(PMID:11250896)
GO_REF:0000024
RGD
UniProt
PMID:11250896 GO_REF:0000024 NCBI chr14:86,673,775...86,677,443
Ensembl chr14:86,673,775...86,677,443
JBrowse link
G Ppial4d peptidylprolyl isomerase A (cyclophilin A)-like 4D ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:22,706,906...22,707,648
Ensembl chr14:22,706,901...22,707,668
JBrowse link
single stranded viral RNA replication via double stranded DNA intermediate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 ISO (PMID:14963118) RGD PMID:14963118 NCBI chr20:13,679,955...13,702,821
Ensembl chr20:13,680,716...13,704,931
JBrowse link
viral replication complex formation and maintenance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pi4ka phosphatidylinositol 4-kinase alpha IEA
ISO
GO_REF:0000107
(PMID:19376974)
Ensembl
RGD
PMID:19376974 GO_REF:0000107 NCBI chr11:87,858,323...87,975,549
Ensembl chr11:87,858,453...87,973,422
JBrowse link
viral RNA genome replication term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 ISO (PMID:19376974) RGD PMID:19376974 NCBI chr 5:155,690,267...155,728,385
Ensembl chr 5:155,691,390...155,728,300
JBrowse link
G Eea1 early endosome antigen 1 ISO (PMID:19376974) RGD PMID:19376974 NCBI chr 7:37,101,415...37,186,534
Ensembl chr 7:37,018,459...37,186,732
JBrowse link
G Pcbp1 poly(rC) binding protein 1 ISO (PMID:12414943) RGD PMID:12414943 NCBI chr 4:118,327,185...118,329,223
Ensembl chr 4:118,327,533...118,328,602
JBrowse link
G Pcbp2 poly(rC) binding protein 2 ISO (PMID:12414943) RGD PMID:12414943 NCBI chr 7:144,077,901...144,103,723
Ensembl chr 7:144,078,496...144,101,893
JBrowse link
G Pi4ka phosphatidylinositol 4-kinase alpha IEA
ISO
GO_REF:0000107
(PMID:19376974)
Ensembl
RGD
PMID:19376974 GO_REF:0000107 NCBI chr11:87,858,323...87,975,549
Ensembl chr11:87,858,453...87,973,422
JBrowse link
G Pik3c2g phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma ISO (PMID:19376974) RGD PMID:19376974 NCBI chr 4:173,732,196...174,102,502
Ensembl chr 4:173,732,248...174,102,496
JBrowse link
G Rab29 RAB29, member RAS oncogene family ISO (PMID:19376974) RGD PMID:19376974 NCBI chr13:48,644,575...48,650,229
Ensembl chr13:48,644,604...48,650,220
JBrowse link
G Rab5a RAB5A, member RAS oncogene family ISO (PMID:19376974) RGD PMID:19376974 NCBI chr 9:5,910...6,065 JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 IEA
ISO
GO_REF:0000107
(PMID:19376974)
Ensembl
RGD
PMID:19376974 GO_REF:0000107 NCBI chr 6:42,180,864...42,289,910
Ensembl chr 6:42,180,894...42,289,908
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    interspecies interaction between organisms 1917
      symbiotic process 400
        viral process 334
          viral genome replication 120
            genome retention in viral capsid 0
            negative regulation of viral genome replication + 63
            positive regulation of viral genome replication + 35
            regulation of viral genome replication + 102
            viral DNA genome replication + 0
            viral RNA genome replication + 30
            viral replication complex formation and maintenance 1
Path 2
Term Annotations click to browse term
  biological_process 20027
    interspecies interaction between organisms 1917
      symbiotic process 400
        viral process 334
          viral life cycle 251
            viral genome replication 120
              genome retention in viral capsid 0
              negative regulation of viral genome replication + 63
              positive regulation of viral genome replication + 35
              regulation of viral genome replication + 102
              viral DNA genome replication + 0
              viral RNA genome replication + 30
              viral replication complex formation and maintenance 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.