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ONTOLOGY REPORT - ANNOTATIONS


Term:viral translation
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Accession:GO:0019081 term browser browse the term
Definition:A process by which viral mRNA is translated into viral protein, using the host cellular machinery.
Synonyms:exact_synonym: viral protein anabolism;   viral protein biosynthesis;   viral protein biosynthetic process;   viral protein formation;   viral protein synthesis


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viral translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 ISO
ISS
(MGI:MGI:5700304|PMID:16601681)
GO_REF:0000024
RGD
UniProt
PMID:16601681 GO_REF:0000024, MGI:MGI:5700304 NCBI chr 3:110,159,624...110,245,382
Ensembl chr 3:110,159,708...110,249,217
JBrowse link
IRES-dependent viral translational initiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Denr density regulated reinitiation and release factor ISO (PMID:20713520) RGD PMID:20713520 NCBI chr12:38,095,717...38,117,758
Ensembl chr12:38,096,034...38,116,919
JBrowse link
G Eif2d eukaryotic translation initiation factor 2D ISO (PMID:20713520) RGD PMID:20713520 NCBI chr13:47,935,138...47,958,459
Ensembl chr13:47,935,163...47,954,090
JBrowse link
G Eif3a eukaryotic translation initiation factor 3, subunit A ISO (PMID:23766293), (PMID:24357634), (PMID:9573242) RGD PMID:9573242, PMID:23766293, PMID:24357634 NCBI chr 1:282,139,809...282,170,017
Ensembl chr 1:282,139,823...282,170,017
JBrowse link
G Eif3b eukaryotic translation initiation factor 3, subunit B ISO (PMID:9573242) RGD PMID:9573242 NCBI chr12:16,285,730...16,310,190
Ensembl chr12:16,285,733...16,310,190
JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D ISO (PMID:9573242) RGD PMID:9573242 NCBI chr 7:119,188,189...119,200,578
Ensembl chr 7:119,188,185...119,200,623
JBrowse link
G Eif3f eukaryotic translation initiation factor 3, subunit F ISO (PMID:9573242) RGD PMID:9573242 NCBI chr 1:173,532,826...173,541,806
Ensembl chr 1:173,532,803...173,541,847
JBrowse link
G Mcts1 MCTS1, re-initiation and release factor ISO (PMID:20713520) RGD PMID:20713520 NCBI chr  X:124,894,269...124,906,129
Ensembl chr  X:124,894,466...124,906,162
JBrowse link
G Pcbp2 poly(rC) binding protein 2 ISO (PMID:12414943) RGD PMID:12414943 NCBI chr 7:144,077,901...144,103,723
Ensembl chr 7:144,078,496...144,101,893
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO
IEA
(PMID:21518806)
GO_REF:0000107
RGD
Ensembl
PMID:21518806 GO_REF:0000107 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Ssb small RNA binding exonuclease protection factor La ISO (PMID:12384597) RGD PMID:12384597 NCBI chr 3:56,092,425...56,102,008
Ensembl chr 3:56,092,501...56,102,001
JBrowse link
positive regulation of viral translation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 ISO (PMID:16680162) RGD PMID:16680162 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
viral translational frameshifting term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shfl shiftless antiviral inhibitor of ribosomal frameshifting ISS
ISO
IEA
GO_REF:0000024
(PMID:30682371)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:30682371 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:21,890,214...21,896,045
Ensembl chr 8:21,890,319...21,896,031
JBrowse link
viral translational termination-reinitiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif3a eukaryotic translation initiation factor 3, subunit A ISO (PMID:21347434) RGD PMID:21347434 NCBI chr 1:282,139,809...282,170,017
Ensembl chr 1:282,139,823...282,170,017
JBrowse link
G Eif3b eukaryotic translation initiation factor 3, subunit B ISO (PMID:21347434) RGD PMID:21347434 NCBI chr12:16,285,730...16,310,190
Ensembl chr12:16,285,733...16,310,190
JBrowse link
G Eif3d eukaryotic translation initiation factor 3, subunit D ISO (PMID:21347434) RGD PMID:21347434 NCBI chr 7:119,188,189...119,200,578
Ensembl chr 7:119,188,185...119,200,623
JBrowse link
G Eif3g eukaryotic translation initiation factor 3, subunit G ISO (PMID:21347434) RGD PMID:21347434 NCBI chr 8:21,911,632...21,915,664
Ensembl chr 8:21,911,625...21,915,716
JBrowse link
G Eif3l eukaryotic translation initiation factor 3, subunit L ISO (PMID:21347434) RGD PMID:21347434 NCBI chr 7:120,320,547...120,331,596
Ensembl chr 7:120,320,547...120,331,595
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    interspecies interaction between organisms 1917
      symbiotic process 400
        viral process 334
          viral translation 15
            IRES-dependent viral translational initiation 10
            negative regulation of viral translation 0
            positive regulation of viral translation 1
            regulation of viral translation + 1
            ribosomal skipping 0
            viral translational frameshifting 1
            viral translational readthrough 0
            viral translational shunt 0
            viral translational termination-reinitiation 5
Path 2
Term Annotations click to browse term
  biological_process 20027
    interspecies interaction between organisms 1917
      symbiotic process 400
        viral process 334
          viral gene expression 70
            viral translation 15
              IRES-dependent viral translational initiation 10
              negative regulation of viral translation 0
              positive regulation of viral translation 1
              regulation of viral translation + 1
              ribosomal skipping 0
              viral translational frameshifting 1
              viral translational readthrough 0
              viral translational shunt 0
              viral translational termination-reinitiation 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.