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ONTOLOGY REPORT - ANNOTATIONS


Term:pentose metabolic process
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Accession:GO:0019321 term browser browse the term
Definition:The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose metabolism


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pentose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGGY FGGY carbohydrate kinase domain containing IEA Ensembl GO_REF:0000107 NCBI chr 5:50,109,660...50,523,896
Ensembl chr 5:50,109,660...50,522,630
JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT5 nudix hydrolase 5 IEA Ensembl GO_REF:0000107 NCBI chr 2:24,239,632...24,266,763
Ensembl chr 2:24,239,627...24,264,469
JBrowse link
G RBKS ribokinase IEA UniProt GO_REF:0000041 NCBI chr17:21,793,882...21,944,839
Ensembl chr17:21,795,203...21,944,805
JBrowse link
D-ribose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC475755 ribose-5-phosphate isomerase IBA (PMID:21873635) GO_Central PMID:21873635
G RPIA ribose 5-phosphate isomerase A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:37,640,740...37,671,308 JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHDH dihydrodiol dehydrogenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:107,434,363...107,445,068
Ensembl chr 1:107,434,323...107,445,107
JBrowse link
D-xylose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XYLB xylulokinase IEA UniProt GO_REF:0000104 NCBI chr23:8,123,041...8,171,803
Ensembl chr23:8,122,197...8,170,447
JBrowse link
L-arabinose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTOG otogelin IEA InterPro GO_REF:0000002 NCBI chr21:40,103,163...40,193,680
Ensembl chr21:40,106,826...40,192,475
JBrowse link
G OTOGL otogelin like IEA InterPro GO_REF:0000002 NCBI chr15:22,623,183...22,754,605
Ensembl chr15:22,556,295...22,753,956
JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6PD glucose-6-phosphate dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr  X:122,217,317...122,231,862
Ensembl chr  X:122,205,683...122,231,678
JBrowse link
G PGD phosphogluconate dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 2:85,393,526...85,408,714
Ensembl chr 2:85,393,819...85,408,272
JBrowse link
pentose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE ribulose-5-phosphate-3-epimerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr37:17,866,729...17,882,702 JBrowse link
xylulose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCXR dicarbonyl and L-xylulose reductase IEA Ensembl GO_REF:0000107 NCBI chr 9:289,864...291,518
Ensembl chr 9:289,889...291,480
JBrowse link
G XYLB xylulokinase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr23:8,123,041...8,171,803
Ensembl chr23:8,122,197...8,170,447
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10637
      small molecule metabolic process 1674
        monosaccharide metabolic process 257
          pentose metabolic process 13
            D-ribose metabolic process + 4
            D-xylose metabolic process + 2
            L-lyxose metabolic process 0
            arabinose metabolic process + 2
            pentose biosynthetic process + 2
            pentose catabolic process + 4
            xylulose metabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10637
      primary metabolic process 9451
        carbohydrate metabolic process 565
          monosaccharide metabolic process 257
            pentose metabolic process 13
              D-ribose metabolic process + 4
              D-xylose metabolic process + 2
              L-lyxose metabolic process 0
              arabinose metabolic process + 2
              pentose biosynthetic process + 2
              pentose catabolic process + 4
              xylulose metabolic process + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.