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ONTOLOGY REPORT - ANNOTATIONS


Term:pentose metabolic process
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Accession:GO:0019321 term browser browse the term
Definition:The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose metabolism


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pentose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGGY FGGY carbohydrate kinase domain containing IMP
IDA
(PMID:27909055) SGD PMID:27909055 NCBI chr 1:59,296,405...59,762,730
Ensembl chr 1:59,296,638...59,810,647
JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT5 nudix hydrolase 5 NAS
IDA
(PMID:10567213)
(PMID:21389046)
UniProtKB PMID:10567213, PMID:21389046 NCBI chr10:12,165,330...12,195,891
Ensembl chr10:12,165,330...12,196,144
JBrowse link
G RBKS ribokinase IEA UniProtKB GO_REF:0000041 NCBI chr 2:27,781,379...27,890,387
Ensembl chr 2:27,781,379...27,890,681
JBrowse link
D-ribose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPIA ribose 5-phosphate isomerase A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:88,691,673...88,750,929
Ensembl chr 2:88,691,673...88,750,929
JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHDH dihydrodiol dehydrogenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:48,932,790...48,944,969
Ensembl chr19:48,933,699...48,944,969
JBrowse link
D-xylose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCXR dicarbonyl and L-xylulose reductase IEA UniProt GO_REF:0000043 NCBI chr17:82,035,858...82,037,697
Ensembl chr17:82,035,136...82,037,709
JBrowse link
G XYLB xylulokinase IEA UniProt GO_REF:0000043, GO_REF:0000104 NCBI chr 3:38,346,785...38,453,041
Ensembl chr 3:38,346,760...38,421,348
JBrowse link
L-arabinose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTOG otogelin IEA InterPro GO_REF:0000002 NCBI chr11:17,547,259...17,646,044
Ensembl chr11:17,547,373...17,647,150
JBrowse link
G OTOGL otogelin like IEA InterPro GO_REF:0000002 NCBI chr12:80,099,537...80,380,880
Ensembl chr12:80,099,537...80,380,879
JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6PD glucose-6-phosphate dehydrogenase IDA (PMID:5643703) BHF-UCL PMID:5643703 NCBI chr  X:154,531,390...154,547,569
Ensembl chr  X:154,531,391...154,547,572
JBrowse link
G PGD phosphogluconate dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 1:10,399,064...10,420,511
Ensembl chr 1:10,398,592...10,420,511
JBrowse link
pentose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE ribulose-5-phosphate-3-epimerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:210,002,628...210,023,363
Ensembl chr 2:210,002,565...210,022,260
JBrowse link
G RPEL1 ribulose-5-phosphate-3-epimerase like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:103,245,887...103,248,016
Ensembl chr10:103,245,887...103,248,016
JBrowse link
xylulose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TALDO1 transaldolase 1 TAS Reactome Reactome:R-HSA-163754 NCBI chr11:747,464...765,012
Ensembl chr11:747,415...765,012
JBrowse link
G TKT transketolase TAS Reactome Reactome:R-HSA-163754 NCBI chr 3:53,224,712...53,256,052
Ensembl chr 3:53,224,712...53,256,052
JBrowse link
xylulose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XYLB xylulokinase TAS (PMID:9763671) BHF-UCL PMID:9763671 NCBI chr 3:38,346,785...38,453,041
Ensembl chr 3:38,346,760...38,421,348
JBrowse link
xylulose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCXR dicarbonyl and L-xylulose reductase IDA
IBA
(PMID:11882650)
(PMID:21873635)
UniProtKB
GO_Central
PMID:11882650, PMID:21873635 NCBI chr17:82,035,858...82,037,697
Ensembl chr17:82,035,136...82,037,709
JBrowse link
G XYLB xylulokinase IDA
IBA
IEA
(PMID:23179721)
(PMID:21873635)
UniProtKB
GO_Central
UniProt
PMID:21873635, PMID:23179721 GO_REF:0000104 NCBI chr 3:38,346,785...38,453,041
Ensembl chr 3:38,346,760...38,421,348
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18626
    metabolic process 12276
      small molecule metabolic process 2139
        monosaccharide metabolic process 326
          pentose metabolic process 15
            D-ribose metabolic process + 3
            D-xylose metabolic process + 3
            L-lyxose metabolic process 0
            arabinose metabolic process + 2
            pentose biosynthetic process + 4
            pentose catabolic process + 6
            xylulose metabolic process + 4
Path 2
Term Annotations click to browse term
  biological_process 18626
    metabolic process 12276
      primary metabolic process 10988
        carbohydrate metabolic process 687
          monosaccharide metabolic process 326
            pentose metabolic process 15
              D-ribose metabolic process + 3
              D-xylose metabolic process + 3
              L-lyxose metabolic process 0
              arabinose metabolic process + 2
              pentose biosynthetic process + 4
              pentose catabolic process + 6
              xylulose metabolic process + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.