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ONTOLOGY REPORT - ANNOTATIONS


Term:pentose metabolic process
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Accession:GO:0019321 term browser browse the term
Definition:The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose metabolism


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pentose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fggy FGGY carbohydrate kinase domain containing ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:95,557,480...95,926,939
Ensembl chr 4:95,557,507...95,926,939
JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix (nucleoside diphosphate linked moiety X)-type motif 5 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 2:5,845,034...5,870,820
Ensembl chr 2:5,845,019...5,871,895
JBrowse link
D-ribose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rbks ribokinase IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr 5:31,624,439...31,697,649
Ensembl chr 5:31,624,439...31,697,627
JBrowse link
G Rpia ribose 5-phosphate isomerase A IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 6:70,765,720...70,792,175
Ensembl chr 6:70,765,720...70,792,232
JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdh dihydrodiol dehydrogenase (dimeric) IDA
IBA
(MGI:MGI:55366|PMID:6753830)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:6753830, PMID:21873635 MGI:MGI:55366, MGI:MGI:6201960 NCBI chr 7:45,472,956...45,488,888
Ensembl chr 7:45,470,987...45,488,805
JBrowse link
D-xylose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcxr dicarbonyl L-xylulose reductase IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr11:120,724,546...120,727,284
Ensembl chr11:120,725,399...120,727,281
JBrowse link
G Xylb xylulokinase homolog (H. influenzae) IEA UniProtKB GO_REF:0000004, MGI:MGI:1354194 NCBI chr 9:119,357,381...119,393,797
Ensembl chr 9:119,357,381...119,393,797
JBrowse link
L-arabinose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otog otogelin IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr 7:46,240,987...46,311,434
Ensembl chr 7:46,240,987...46,311,434
JBrowse link
G Otogl otogelin-like IEA UniProtKB GO_REF:0000002, MGI:MGI:2152098 NCBI chr10:107,760,530...107,912,379
Ensembl chr10:107,760,531...107,912,134
JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pdx glucose-6-phosphate dehydrogenase X-linked ISO
IDA
IMP
(MGI:MGI:1097071|PMID:9330624), (MGI:MGI:1202104|PMID:9539108), (MGI:MGI:1261671|PMID:9627357), (MGI:MGI:54902|PMID:7439685), (MGI:MGI:61105|PMID:8491670)
(MGI:MGI:3607389|PMID:14757696), (MGI:MGI:3694178|PMID:15998684), (MGI:MGI:49164|PMID:1953691)
MGI PMID:1953691, PMID:7439685, PMID:8491670, PMID:9330624, PMID:9539108, PMID:9627357, PMID:14757696, PMID:15998684 GO_REF:0000096, MGI:MGI:1097071, MGI:MGI:1202104, MGI:MGI:1261671, MGI:MGI:3607389, MGI:MGI:3694178, MGI:MGI:4834177, MGI:MGI:49164, MGI:MGI:54902, MGI:MGI:61105 NCBI chr  X:74,409,483...74,428,880
Ensembl chr  X:74,409,483...74,429,194
JBrowse link
G Pgd phosphogluconate dehydrogenase IDA (MGI:MGI:61105|PMID:8491670) MGI PMID:8491670 MGI:MGI:61105 NCBI chr 4:149,149,991...149,166,705
Ensembl chr 4:149,149,991...149,166,771
JBrowse link
pentose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe ribulose-5-phosphate-3-epimerase IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr 1:66,700,797...66,719,805
Ensembl chr 1:66,700,831...66,719,805
JBrowse link
xylulose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbr2 carbonyl reductase 2 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr11:120,729,485...120,732,025
Ensembl chr11:120,729,489...120,732,114
JBrowse link
G Dcxr dicarbonyl L-xylulose reductase IDA
IBA
ISO
(MGI:MGI:2179664|PMID:11882650)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
RGD
PMID:11882650, PMID:21873635 GO_REF:0000096, MGI:MGI:2179664, MGI:MGI:4417868, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr11:120,724,546...120,727,284
Ensembl chr11:120,725,399...120,727,281
JBrowse link
G Xylb xylulokinase homolog (H. influenzae) ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 9:119,357,381...119,393,797
Ensembl chr 9:119,357,381...119,393,797
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23369
    metabolic process 11273
      small molecule metabolic process 1760
        monosaccharide metabolic process 278
          pentose metabolic process 13
            D-ribose metabolic process + 3
            D-xylose metabolic process + 3
            L-lyxose metabolic process 0
            arabinose metabolic process + 2
            pentose biosynthetic process + 2
            pentose catabolic process + 3
            xylulose metabolic process + 3
Path 2
Term Annotations click to browse term
  biological_process 23369
    metabolic process 11273
      primary metabolic process 9905
        carbohydrate metabolic process 579
          monosaccharide metabolic process 278
            pentose metabolic process 13
              D-ribose metabolic process + 3
              D-xylose metabolic process + 3
              L-lyxose metabolic process 0
              arabinose metabolic process + 2
              pentose biosynthetic process + 2
              pentose catabolic process + 3
              xylulose metabolic process + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.