Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:pentose metabolic process
go back to main search page
Accession:GO:0019321 term browser browse the term
Definition:The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose metabolism


show annotations for term's descendants           Sort by:
 
pentose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGGY FGGY carbohydrate kinase domain containing IEA Ensembl GO_REF:0000107 NCBI chr 6:152,754,923...153,213,179
Ensembl chr 6:152,754,921...153,213,170
JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT5 nudix hydrolase 5 IEA Ensembl GO_REF:0000107 NCBI chr10:59,765,444...59,787,773
Ensembl chr10:59,765,703...59,790,159
JBrowse link
G RBKS ribokinase IEA UniProt GO_REF:0000041 NCBI chr 3:111,328,758...111,426,173
Ensembl chr 3:111,328,750...111,426,909
JBrowse link
D-ribose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPIA ribose 5-phosphate isomerase A IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:57,355,973...57,386,948
Ensembl chr 3:57,355,979...57,386,946
JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHDH dihydrodiol dehydrogenase ISO (MGI:MGI:55366|PMID:6753830) MGI PMID:6753830 MGI:MGI:55366 NCBI chr 6:54,210,693...54,217,250
Ensembl chr 6:54,187,260...54,228,144
JBrowse link
D-xylose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G XYLB xylulokinase IEA UniProt GO_REF:0000104 NCBI chr13:23,173,855...23,225,583
Ensembl chr13:23,173,939...23,225,951
JBrowse link
L-arabinose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTOG otogelin IEA InterPro GO_REF:0000002 NCBI chr 2:41,497,201...41,590,564
Ensembl chr 2:41,497,200...41,584,934
JBrowse link
G OTOGL otogelin like IEA InterPro GO_REF:0000002 NCBI chr 5:101,099,525...101,318,254
Ensembl chr 5:101,100,282...101,251,884
JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6PD glucose-6-phosphate dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr  X:125,029,147...125,041,040
Ensembl chr  X:125,025,257...125,041,033
JBrowse link
G PGD phosphogluconate dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 6:70,675,751...70,692,697
Ensembl chr 6:70,675,815...70,692,679
JBrowse link
pentose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE ribulose-5-phosphate-3-epimerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:112,723,318...112,748,337 JBrowse link
xylulose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBR2 carbonyl reductase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:973,780...976,017
Ensembl chr12:973,760...976,017
JBrowse link
G DCXR dicarbonyl and L-xylulose reductase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:978,131...980,042
Ensembl chr12:978,139...982,263
JBrowse link
G XYLB xylulokinase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000104 NCBI chr13:23,173,855...23,225,583
Ensembl chr13:23,173,939...23,225,951
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16524
    metabolic process 10565
      small molecule metabolic process 1659
        monosaccharide metabolic process 258
          pentose metabolic process 13
            D-ribose metabolic process + 3
            D-xylose metabolic process + 2
            L-lyxose metabolic process 0
            arabinose metabolic process + 2
            pentose biosynthetic process + 2
            pentose catabolic process + 4
            xylulose metabolic process + 3
Path 2
Term Annotations click to browse term
  biological_process 16524
    metabolic process 10565
      primary metabolic process 9374
        carbohydrate metabolic process 554
          monosaccharide metabolic process 258
            pentose metabolic process 13
              D-ribose metabolic process + 3
              D-xylose metabolic process + 2
              L-lyxose metabolic process 0
              arabinose metabolic process + 2
              pentose biosynthetic process + 2
              pentose catabolic process + 4
              xylulose metabolic process + 3
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.