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ONTOLOGY REPORT - ANNOTATIONS


Term:pentose metabolic process
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Accession:GO:0019321 term browser browse the term
Definition:The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose metabolism


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pentose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fggy FGGY carbohydrate kinase domain containing ISO (PMID:27909055) RGD PMID:27909055 NCBI chr 5:114,516,860...114,901,571
Ensembl chr 5:114,516,889...114,901,564
JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21389046)
Ensembl
UniProt
RGD
PMID:21389046 GO_REF:0000024, GO_REF:0000107 NCBI chr17:76,387,027...76,410,309
Ensembl chr17:76,387,031...76,410,294
JBrowse link
G Rbks ribokinase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:26,051,568...26,128,762
Ensembl chr 6:26,051,396...26,128,906
JBrowse link
D-ribose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpia ribose 5-phosphate isomerase A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:98,568,028...98,593,664
Ensembl chr 4:98,568,028...98,593,664
JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdh dihydrodiol dehydrogenase ISO
IBA
(MGI:MGI:55366|PMID:6753830)
PMID:21873635
RGD PMID:6753830, PMID:21873635 MGI:MGI:55366, RGD:13792537 NCBI chr 1:101,465,937...101,476,867
Ensembl chr 1:101,466,677...101,476,867
JBrowse link
D-xylose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcxr dicarbonyl and L-xylulose reductase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr10:109,906,119...109,909,696
Ensembl chr10:109,906,815...109,909,715
JBrowse link
G Xylb xylulokinase IEA GO_REF:0000043
GO_REF:0000104
UniProt GO_REF:0000043, GO_REF:0000104 NCBI chr 8:128,041,875...128,076,951
Ensembl chr 8:128,044,084...128,076,946
JBrowse link
L-arabinose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otog otogelin IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:102,258,124...102,327,201
Ensembl chr 1:102,258,124...102,327,201
JBrowse link
G Otogl otogelin-like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:51,768,469...51,935,442
Ensembl chr 7:51,794,173...51,935,142
JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pd glucose-6-phosphate dehydrogenase ISO (PMID:5643703)
MGI:MGI:2182739 (MGI:MGI:1097071|PMID:9330624), (MGI:MGI:1202104|PMID:9539108), (MGI:MGI:1261671|PMID:9627357), (MGI:MGI:3607389|PMID:14757696), (MGI:MGI:3694178|PMID:15998684), (MGI:MGI:49164|PMID:1953691), (MGI:MGI:54902|PMID:7439685), (MGI:MGI:61105|PMID:8491670)
RGD PMID:1953691, PMID:5643703, PMID:7439685, PMID:8491670, PMID:9330624, PMID:9539108, PMID:9627357, PMID:14757696, PMID:15998684 MGI:MGI:1097071, MGI:MGI:1202104, MGI:MGI:1261671, MGI:MGI:3607389, MGI:MGI:3694178, MGI:MGI:49164, MGI:MGI:54902, MGI:MGI:61105 NCBI chr  X:156,274,800...156,293,935
Ensembl chr  X:156,274,800...156,293,926
JBrowse link
G Pgd phosphogluconate dehydrogenase ISO (MGI:MGI:61105|PMID:8491670) RGD PMID:8491670 MGI:MGI:61105 NCBI chr 5:165,966,128...165,982,327 JBrowse link
pentose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe ribulose-5-phosphate-3-epimerase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:73,687,684...73,713,643
Ensembl chr 9:73,687,743...73,711,571
JBrowse link
xylulose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dcxr dicarbonyl and L-xylulose reductase IDA
IBA
ISO
PMID:11882650
PMID:21873635
(PMID:11882650)
(MGI:MGI:2179664|PMID:11882650)
RGD PMID:11882650, PMID:11882650, PMID:21873635 MGI:MGI:2179664, RGD:632676, RGD:13792537 NCBI chr10:109,906,119...109,909,696
Ensembl chr10:109,906,815...109,909,715
JBrowse link
G LOC688320 similar to Lung carbonyl reductase [NADPH] (NADPH-dependent carbonyl reductase) (LCR) (Adipocyte P27 protein) (AP27) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:109,911,918...109,944,190
Ensembl chr10:109,911,922...109,913,879
JBrowse link
G LOC688321 similar to Lung carbonyl reductase [NADPH] (NADPH-dependent carbonyl reductase) (LCR) (Adipocyte P27 protein) (AP27) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:109,949,168...109,953,268
Ensembl chr10:109,950,988...109,953,066
JBrowse link
G Xylb xylulokinase ISO
IEA
IBA
ISS
(PMID:23179721)
GO_REF:0000104
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:23179721, PMID:21873635 GO_REF:0000024, GO_REF:0000104, RGD:13792537 NCBI chr 8:128,041,875...128,076,951
Ensembl chr 8:128,044,084...128,076,946
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      small molecule metabolic process 1870
        monosaccharide metabolic process 294
          pentose metabolic process 14
            D-ribose metabolic process + 3
            D-xylose metabolic process + 3
            L-lyxose metabolic process 0
            arabinose metabolic process + 2
            pentose biosynthetic process + 2
            pentose catabolic process + 4
            xylulose metabolic process + 4
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      primary metabolic process 10901
        carbohydrate metabolic process 630
          monosaccharide metabolic process 294
            pentose metabolic process 14
              D-ribose metabolic process + 3
              D-xylose metabolic process + 3
              L-lyxose metabolic process 0
              arabinose metabolic process + 2
              pentose biosynthetic process + 2
              pentose catabolic process + 4
              xylulose metabolic process + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.