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ONTOLOGY REPORT - ANNOTATIONS


Term:pentose metabolic process
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Accession:GO:0019321 term browser browse the term
Definition:The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose metabolism


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pentose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fggy FGGY carbohydrate kinase domain containing ISO (PMID:27909055) SGD PMID:27909055 NCBI chrNW_004936522:2,196,664...2,589,311 JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 ISO (PMID:21389046) UniProtKB PMID:21389046 NCBI chrNW_004936484:3,148,955...3,169,527 JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdh dihydrodiol dehydrogenase ISO (MGI:MGI:55366|PMID:6753830) MGI PMID:6753830 MGI:MGI:55366 NCBI chrNW_004936664:2,955,538...2,964,709 JBrowse link
pentose biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G G6pd glucose-6-phosphate dehydrogenase ISO (PMID:5643703)
(MGI:MGI:3607389|PMID:14757696), (MGI:MGI:3694178|PMID:15998684), (MGI:MGI:49164|PMID:1953691)
(MGI:MGI:1097071|PMID:9330624), (MGI:MGI:1202104|PMID:9539108), (MGI:MGI:1261671|PMID:9627357), (MGI:MGI:54902|PMID:7439685), (MGI:MGI:61105|PMID:8491670)
BHF-UCL
MGI
PMID:1953691, PMID:5643703, PMID:7439685, PMID:8491670, PMID:9330624, PMID:9539108, PMID:9627357, PMID:14757696, PMID:15998684 MGI:MGI:1097071, MGI:MGI:1202104, MGI:MGI:1261671, MGI:MGI:3607389, MGI:MGI:3694178, MGI:MGI:49164, MGI:MGI:54902, MGI:MGI:61105 NCBI chrNW_004936809:1,269,900...1,285,853 JBrowse link
G Pgd phosphogluconate dehydrogenase ISO (MGI:MGI:61105|PMID:8491670) MGI PMID:8491670 MGI:MGI:61105 NCBI chrNW_004936623:4,234,869...4,251,690 JBrowse link
xylulose metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101967786 L-xylulose reductase ISO (MGI:MGI:2179664|PMID:11882650)
(PMID:11882650)
MGI
UniProtKB
UniProt
PMID:11882650 MGI:MGI:2179664, RGD:632676 NCBI chrNW_004936594:5,532,264...5,534,129 JBrowse link
G Xylb xylulokinase ISO (PMID:23179721) UniProtKB PMID:23179721 NCBI chrNW_004936473:27,725,955...27,767,319 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11966
    metabolic process 7654
      small molecule metabolic process 1240
        monosaccharide metabolic process 205
          pentose metabolic process 7
            D-ribose metabolic process + 1
            D-xylose metabolic process + 1
            L-lyxose metabolic process 0
            arabinose metabolic process + 0
            pentose biosynthetic process + 2
            pentose catabolic process + 2
            xylulose metabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 11966
    metabolic process 7654
      primary metabolic process 6775
        carbohydrate metabolic process 382
          monosaccharide metabolic process 205
            pentose metabolic process 7
              D-ribose metabolic process + 1
              D-xylose metabolic process + 1
              L-lyxose metabolic process 0
              arabinose metabolic process + 0
              pentose biosynthetic process + 2
              pentose catabolic process + 2
              xylulose metabolic process + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.