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ONTOLOGY REPORT - ANNOTATIONS


Term:pentose catabolic process
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Accession:GO:0019323 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose breakdown;   pentose catabolism;   pentose degradation


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pentose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpe ribulose-5-phosphate-3-epimerase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:73,687,684...73,713,643
Ensembl chr 9:73,687,743...73,711,571
JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:21389046)
Ensembl
UniProt
RGD
PMID:21389046 GO_REF:0000024, GO_REF:0000107 NCBI chr17:76,387,027...76,410,309
Ensembl chr17:76,387,031...76,410,294
JBrowse link
G Rbks ribokinase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:26,051,568...26,128,762
Ensembl chr 6:26,051,396...26,128,906
JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhdh dihydrodiol dehydrogenase ISO
IBA
(MGI:MGI:55366|PMID:6753830)
PMID:21873635
RGD PMID:6753830, PMID:21873635 MGI:MGI:55366, RGD:13792537 NCBI chr 1:101,465,937...101,476,867
Ensembl chr 1:101,466,677...101,476,867
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      small molecule metabolic process 1870
        monosaccharide metabolic process 294
          monosaccharide catabolic process 27
            pentose catabolic process 4
              D-ribose catabolic process 2
              D-xylose catabolic process + 1
              arabinose catabolic process + 0
              pentose catabolic process to acetate 0
              pentose catabolic process to butan-1-ol 0
              pentose catabolic process to butyrate 0
              pentose catabolic process to ethanol + 0
              pentose catabolic process to propan-2-ol 0
              xylulose catabolic process 0
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      primary metabolic process 10901
        carbohydrate metabolic process 630
          monosaccharide metabolic process 294
            pentose metabolic process 14
              pentose catabolic process 4
                D-ribose catabolic process 2
                D-xylose catabolic process + 1
                arabinose catabolic process + 0
                pentose catabolic process to acetate 0
                pentose catabolic process to butan-1-ol 0
                pentose catabolic process to butyrate 0
                pentose catabolic process to ethanol + 0
                pentose catabolic process to propan-2-ol 0
                xylulose catabolic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.