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ONTOLOGY REPORT - ANNOTATIONS


Term:pentose catabolic process
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Accession:GO:0019323 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule.
Synonyms:exact_synonym: pentose breakdown;   pentose catabolism;   pentose degradation


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pentose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPE ribulose-5-phosphate-3-epimerase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:112,723,318...112,748,337 JBrowse link
D-ribose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT5 nudix hydrolase 5 IEA Ensembl GO_REF:0000107 NCBI chr10:59,765,444...59,787,773
Ensembl chr10:59,765,703...59,790,159
JBrowse link
G RBKS ribokinase IEA UniProt GO_REF:0000041 NCBI chr 3:111,328,758...111,426,173
Ensembl chr 3:111,328,750...111,426,909
JBrowse link
D-xylose catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHDH dihydrodiol dehydrogenase ISO (MGI:MGI:55366|PMID:6753830) MGI PMID:6753830 MGI:MGI:55366 NCBI chr 6:54,210,693...54,217,250
Ensembl chr 6:54,187,260...54,228,144
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10588
      small molecule metabolic process 1663
        monosaccharide metabolic process 258
          monosaccharide catabolic process 24
            pentose catabolic process 4
              D-ribose catabolic process 2
              D-xylose catabolic process + 1
              arabinose catabolic process + 0
              pentose catabolic process to acetate 0
              pentose catabolic process to butan-1-ol 0
              pentose catabolic process to butyrate 0
              pentose catabolic process to ethanol + 0
              pentose catabolic process to propan-2-ol 0
              xylulose catabolic process 0
Path 2
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10588
      primary metabolic process 9409
        carbohydrate metabolic process 568
          monosaccharide metabolic process 258
            pentose metabolic process 13
              pentose catabolic process 4
                D-ribose catabolic process 2
                D-xylose catabolic process + 1
                arabinose catabolic process + 0
                pentose catabolic process to acetate 0
                pentose catabolic process to butan-1-ol 0
                pentose catabolic process to butyrate 0
                pentose catabolic process to ethanol + 0
                pentose catabolic process to propan-2-ol 0
                xylulose catabolic process 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.