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ONTOLOGY REPORT - ANNOTATIONS


Term:pyridine nucleotide biosynthetic process
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Accession:GO:0019363 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
Synonyms:exact_synonym: pyridine nucleotide anabolism;   pyridine nucleotide biosynthesis;   pyridine nucleotide formation;   pyridine nucleotide synthesis
 xref: MetaCyc:PYRIDNUCSYN-PWY


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'de novo' NAD biosynthetic process from tryptophan term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link 10 106,828,963 106,844,314 RGD:1600115
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link 6 7,045,145 7,059,227 RGD:13792537
RGD:1600115
G Ido1 indoleamine 2,3-dioxygenase 1 JBrowse link 16 72,216,326 72,228,098 RGD:13792537
G Ido2 indoleamine 2,3-dioxygenase 2 JBrowse link 16 72,232,852 72,291,227 RGD:13792537
G Kmo kynurenine 3-monooxygenase JBrowse link 13 93,684,324 93,715,378 RGD:1600115
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1600115
NAD biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link 10 106,828,963 106,844,314 RGD:13792537
G Aspdh aspartate dehydrogenase domain containing JBrowse link 1 100,471,066 100,473,327 RGD:1600115
G Haao 3-hydroxyanthranilate 3,4-dioxygenase JBrowse link 6 7,045,145 7,059,227 RGD:1624291
G Kynu kynureninase JBrowse link 3 28,416,926 28,566,939 RGD:1600115
RGD:1624291
G Nadsyn1 NAD synthetase 1 JBrowse link 1 216,985,710 217,013,743 RGD:1600115
RGD:13792537
G Nampt nicotinamide phosphoribosyltransferase JBrowse link 6 52,122,085 52,156,473 RGD:1624291
RGD:1600115
G Naprt nicotinate phosphoribosyltransferase JBrowse link 7 116,922,979 116,926,436 RGD:2289495
RGD:13792537
RGD:1600115
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 JBrowse link 5 166,409,460 166,430,291 RGD:1600115
RGD:1624291
RGD:13792537
G Nmnat2 nicotinamide nucleotide adenylyltransferase 2 JBrowse link 13 70,379,346 70,559,311 RGD:13782043
RGD:13792537
RGD:1600115
G Nmnat3 nicotinamide nucleotide adenylyltransferase 3 JBrowse link 8 106,317,038 106,429,535 RGD:1624291
RGD:13792537
RGD:1600115
G Nmrk1 nicotinamide riboside kinase 1 JBrowse link 1 234,721,992 234,749,452 RGD:1600115
G Qprt quinolinate phosphoribosyltransferase JBrowse link 1 198,544,262 198,559,556 RGD:2289495
RGD:13792537
RGD:1600115
NAD salvage term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Naprt nicotinate phosphoribosyltransferase JBrowse link 7 116,922,979 116,926,436 RGD:13792537
NADP biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:1624291
G Idh2 isocitrate dehydrogenase (NADP(+)) 2 JBrowse link 1 141,874,354 141,893,674 RGD:11522736
G Nadk NAD kinase JBrowse link 5 172,984,930 173,015,505 RGD:13703105
RGD:13792537
G Nadk2 NAD kinase 2, mitochondrial JBrowse link 2 58,462,588 58,504,735 RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      cellular metabolic process 10737
        heterocycle metabolic process 5428
          heterocycle biosynthetic process 3813
            pyridine-containing compound biosynthetic process 24
              pyridine nucleotide biosynthetic process 19
                nicotinamide nucleotide biosynthetic process + 19
                nicotinate nucleotide biosynthetic process + 0
                pyridine nucleotide salvage + 1
Path 2
Term Annotations click to browse term
  biological_process 19576
    metabolic process 11899
      cellular metabolic process 10737
        cellular aromatic compound metabolic process 5503
          nucleobase-containing compound metabolic process 5276
            nucleobase-containing small molecule metabolic process 582
              nucleoside phosphate metabolic process 503
                nucleotide metabolic process 496
                  nucleotide biosynthetic process 250
                    pyridine nucleotide biosynthetic process 19
                      nicotinamide nucleotide biosynthetic process + 19
                      nicotinate nucleotide biosynthetic process + 0
                      pyridine nucleotide salvage + 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.