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ONTOLOGY REPORT - ANNOTATIONS


Term:short-chain fatty acid catabolic process
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Accession:GO:0019626 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of fatty acids with a chain length of less than C6.
Synonyms:exact_synonym: short-chain fatty acid breakdown;   short-chain fatty acid catabolism;   short-chain fatty acid degradation
 xref: MetaCyc:ACETOACETATE-DEG-PWY


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short-chain fatty acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ces1d carboxylesterase 1D IEA
ISO
GO_REF:0000107
(MGI:3654969|PMID:16804080)
Ensembl
RGD
PMID:16804080 GO_REF:0000107, MGI:3654969 NCBI chr19:15,195,514...15,239,827
Ensembl chr19:15,033,108...15,239,821
JBrowse link
2-oxobutyrate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phyh phytanoyl-CoA 2-hydroxylase IDA RGD PMID:10588950 RGD:727286 NCBI chr17:77,287,580...77,304,482
Ensembl chr17:77,287,188...77,304,530
JBrowse link
butyrate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acads acyl-CoA dehydrogenase short chain IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:3968063, PMID:21873635 RGD:2317678, RGD:13792537 NCBI chr12:47,254,503...47,263,747
Ensembl chr12:47,254,484...47,263,747
JBrowse link
propionate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pck1 phosphoenolpyruvate carboxykinase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:171,213,936...171,219,885
Ensembl chr 3:171,213,936...171,219,871
JBrowse link
G Pck2 phosphoenolpyruvate carboxykinase 2 (mitochondrial) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,216,735...34,224,357
Ensembl chr15:34,216,833...34,224,193
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular metabolic process 11073
        cellular lipid metabolic process 1022
          fatty acid metabolic process 422
            short-chain fatty acid metabolic process 12
              short-chain fatty acid catabolic process 5
                2-oxobutyrate catabolic process 1
                acetoacetic acid catabolic process 0
                butyrate catabolic process 1
                propionate catabolic process + 2
Path 2
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        organic acid metabolic process 1008
          oxoacid metabolic process 970
            carboxylic acid metabolic process 951
              monocarboxylic acid metabolic process 651
                fatty acid metabolic process 422
                  fatty acid catabolic process 102
                    short-chain fatty acid catabolic process 5
                      2-oxobutyrate catabolic process 1
                      acetoacetic acid catabolic process 0
                      butyrate catabolic process 1
                      propionate catabolic process + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.