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ONTOLOGY REPORT - ANNOTATIONS


Term:5-methylcytosine metabolic process
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Accession:GO:0019857 term browser browse the term
Definition:The chemical reactions and pathways involving 5-methylcytosine, a methylated base of DNA.
Synonyms:exact_synonym: 5-methylcytosine metabolism


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5-methylcytosine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TET2 tet methylcytosine dioxygenase 2 ISO (MGI:MGI:5298314|PMID:21803851) MGI PMID:21803851 MGI:MGI:5298314 NCBI chr32:26,021,745...26,145,109
Ensembl chr32:26,059,693...26,143,536
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5-methylcytosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TET1 tet methylcytosine dioxygenase 1 IEA UniProt GO_REF:0000104 NCBI chr 4:19,759,661...19,898,345
Ensembl chr 4:19,768,137...19,889,907
JBrowse link
G TET2 tet methylcytosine dioxygenase 2 IEA UniProt GO_REF:0000104 NCBI chr32:26,021,745...26,145,109
Ensembl chr32:26,059,693...26,143,536
JBrowse link
G TET3 tet methylcytosine dioxygenase 3 IEA UniProt GO_REF:0000104 NCBI chr17:48,976,510...49,083,454
Ensembl chr17:48,981,558...49,082,675
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16162
    metabolic process 10639
      cellular metabolic process 9631
        cellular aromatic compound metabolic process 5109
          5-methylcytosine metabolic process 3
            5-methylcytosine biosynthetic process 0
            5-methylcytosine catabolic process 3
Path 2
Term Annotations click to browse term
  biological_process 16162
    cellular process 15440
      cellular metabolic process 9631
        cellular nitrogen compound metabolic process 5695
          pyrimidine-containing compound metabolic process 64
            5-methylcytosine metabolic process 3
              5-methylcytosine biosynthetic process 0
              5-methylcytosine catabolic process 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.