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ONTOLOGY REPORT - ANNOTATIONS


Term:spinal cord dorsal/ventral patterning
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Accession:GO:0021513 term browser browse the term
Definition:The process that regulates the coordinated growth and differentiation that establishes the non-random dorsal-ventral spatial arrangement of the spinal cord.
Comment:This term was added by GO_REF:0000021.
Synonyms:exact_synonym: spinal cord dorsoventral patterning


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spinal cord dorsal/ventral patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G INTU inturned planar cell polarity protein JBrowse link 19 13,193,252 13,276,593 RGD:13508589
BMP signaling pathway involved in spinal cord dorsal/ventral patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CHRD chordin JBrowse link 34 17,255,770 17,264,776 RGD:13508589
negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G IFT122 intraflagellar transport 122 JBrowse link 20 5,644,002 5,716,702 RGD:13508589
G RFX4 regulatory factor X4 JBrowse link 10 31,993,339 32,155,896 RGD:13508589
G RFX8 RFX family member 8, lacking RFX DNA binding domain JBrowse link 10 41,464,882 41,521,157 RGD:13508589
G TULP3 TUB like protein 3 JBrowse link 27 41,819,574 41,884,198 RGD:13508589
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:13508589
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
G SUFU SUFU negative regulator of hedgehog signaling JBrowse link 28 14,992,989 15,115,499 RGD:13508589
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI2 GLI family zinc finger 2 JBrowse link 19 29,128,401 29,383,324 RGD:13508589
G GLI3 GLI family zinc finger 3 JBrowse link 18 7,800,817 8,071,531 RGD:13508589
G SUFU SUFU negative regulator of hedgehog signaling JBrowse link 28 14,992,989 15,115,499 RGD:13508589
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASCL1 achaete-scute family bHLH transcription factor 1 JBrowse link 15 41,694,021 41,696,933 RGD:13508589
G DLL4 delta like canonical Notch ligand 4 JBrowse link 30 8,059,463 8,068,742 RGD:13508589
G FOXN4 forkhead box N4 JBrowse link 26 17,730,638 17,757,173 RGD:13508589
ventral spinal cord interneuron specification term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LHX3 LIM homeobox 3 JBrowse link 9 49,248,555 49,254,128 RGD:13508589

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13038
    multicellular organismal process 4143
      pattern specification process 260
        regionalization 217
          spinal cord patterning 15
            spinal cord dorsal/ventral patterning 13
              BMP signaling pathway involved in spinal cord dorsal/ventral patterning 1
              negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning 4
              retinoic acid receptor signaling pathway involved in spinal cord dorsal/ventral patterning + 0
              smoothened signaling pathway involved in ventral spinal cord patterning + 7
              ventral spinal cord interneuron fate commitment + 7
Path 2
Term Annotations click to browse term
  biological_process 13038
    developmental process 3272
      anatomical structure development 3009
        multicellular organism development 2647
          system development 2434
            nervous system development 1195
              central nervous system development 432
                spinal cord development 53
                  spinal cord patterning 15
                    spinal cord dorsal/ventral patterning 13
                      BMP signaling pathway involved in spinal cord dorsal/ventral patterning 1
                      negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning 4
                      retinoic acid receptor signaling pathway involved in spinal cord dorsal/ventral patterning + 0
                      smoothened signaling pathway involved in ventral spinal cord patterning + 7
                      ventral spinal cord interneuron fate commitment + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.