ONTOLOGY REPORT - ANNOTATIONS


Term:subpallium development
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Accession:GO:0021544 term browser browse the term
Definition:The process whose specific outcome is the progression of the subpallium over time, from its formation to the mature structure. The subpallium is the base region of the telencephalon.
Comment:This term was added by GO_REF:0000021.


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subpallium development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dlx1 distal-less homeobox 1 JBrowse link 3 58,164,931 58,169,521 RGD:1624291
RGD:1600115
G Dlx2 distal-less homeobox 2 JBrowse link 3 58,180,088 58,181,971 RGD:1624291
RGD:1600115
G Fgf8 fibroblast growth factor 8 JBrowse link 1 265,492,949 265,498,965 RGD:1624291
G Gli3 GLI family zinc finger 3 JBrowse link 17 52,294,942 52,569,036 RGD:1624291
G Gsx2 GS homeobox 2 JBrowse link 14 35,650,985 35,652,709 RGD:1624291
caudate nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxp2 forkhead box P2 JBrowse link 4 41,364,441 41,944,685 RGD:1624291
RGD:1600115
lateral ganglionic eminence cell proliferation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gli3 GLI family zinc finger 3 JBrowse link 17 52,294,942 52,569,036 RGD:1624291
RGD:1600115
nucleus accumbens development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 JBrowse link 1 127,302,920 127,337,828 RGD:1624291
RGD:1600115
putamen development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxp2 forkhead box P2 JBrowse link 4 41,364,441 41,944,685 RGD:1624291
RGD:1600115
regulation of timing of subpallium neuron differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
RGD:1600115
striatal medium spiny neuron differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcl11b BAF chromatin remodeling complex subunit BCL11B JBrowse link 6 131,834,097 131,927,251 RGD:1624291
RGD:1600115
G Inhba inhibin subunit beta A JBrowse link 17 51,894,869 51,919,998 RGD:1624291
RGD:1600115
G Shank3 SH3 and multiple ankyrin repeat domains 3 JBrowse link 7 130,474,278 130,534,679 RGD:1624291
RGD:1600115
striatum development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bbs1 Bardet-Biedl syndrome 1 JBrowse link 1 220,146,084 220,165,545 RGD:1624291
RGD:1600115
G Bbs2 Bardet-Biedl syndrome 2 JBrowse link 19 11,385,921 11,421,523 RGD:1624291
RGD:1600115
G Bbs4 Bardet-Biedl syndrome 4 JBrowse link 8 64,115,005 64,154,432 RGD:1624291
RGD:1600115
G Cntnap2 contactin associated protein-like 2 JBrowse link 4 74,700,539 77,025,463 RGD:1624291
G Drd1 dopamine receptor D1 JBrowse link 17 11,099,736 11,104,352 RGD:1624291
RGD:1600115
RGD:7248608
G Drd2 dopamine receptor D2 JBrowse link 8 53,678,777 53,743,643 RGD:7248608
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 JBrowse link 1 21,748,201 21,813,205 RGD:13204724
G Foxp1 forkhead box P1 JBrowse link 4 131,362,178 131,963,466 RGD:11536004
G Hprt1 hypoxanthine phosphoribosyltransferase 1 JBrowse link X 158,196,640 158,228,815 RGD:1624291
G Htt huntingtin JBrowse link 14 81,105,139 81,254,637 RGD:1624291
G Jakmip1 janus kinase and microtubule interacting protein 1 JBrowse link 14 78,403,448 78,523,108 RGD:1624291
RGD:1600115
G LOC103693780 2-oxoglutarate dehydrogenase, mitochondrial-like JBrowse link 14 86,599,906 86,614,963 RGD:1600115
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:13462055
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:12790706
G Mkks McKusick-Kaufman syndrome JBrowse link 3 129,866,542 129,885,213 RGD:1624291
RGD:1600115
G Ogdh oxoglutarate dehydrogenase JBrowse link 14 86,414,924 86,481,903 RGD:1624291
RGD:1600115
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:1624291
RGD:1600115
G Secisbp2 SECIS binding protein 2 JBrowse link 17 13,555,348 13,586,595 RGD:1624291
RGD:1600115
G Slc7a11 solute carrier family 7 member 11 JBrowse link 2 139,453,774 139,528,479 RGD:1624291
RGD:1600115
G Slitrk5 SLIT and NTRK-like family, member 5 JBrowse link 15 96,817,907 96,826,760 RGD:1624291
RGD:1600115
subpallium neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascl1 achaete-scute family bHLH transcription factor 1 JBrowse link 7 28,038,662 28,040,504 RGD:1624291
RGD:1600115
G Gsx2 GS homeobox 2 JBrowse link 14 35,650,985 35,652,709 RGD:1624291
RGD:1600115

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17895
    developmental process 6321
      anatomical structure development 5927
        subpallium development 31
          regulation of timing of subpallium neuron differentiation 1
          striatum development + 25
          subpallium cell migration + 0
          subpallium cell proliferation in forebrain + 1
          subpallium neuron fate commitment 2
Path 2
Term Annotations click to browse term
  biological_process 17895
    developmental process 6321
      anatomical structure development 5927
        multicellular organism development 5423
          system development 5002
            nervous system development 2549
              central nervous system development 1154
                brain development 890
                  forebrain development 497
                    telencephalon development 336
                      subpallium development 31
                        regulation of timing of subpallium neuron differentiation 1
                        striatum development + 25
                        subpallium cell migration + 0
                        subpallium cell proliferation in forebrain + 1
                        subpallium neuron fate commitment 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.