ONTOLOGY REPORT - ANNOTATIONS


Term:subpallium development
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Accession:GO:0021544 term browser browse the term
Definition:The process whose specific outcome is the progression of the subpallium over time, from its formation to the mature structure. The subpallium is the base region of the telencephalon.
Comment:This term was added by GO_REF:0000021.


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subpallium development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G DLX1 distal-less homeobox 1 JBrowse link 2 172,085,480 172,089,674 RGD:2290271
G DLX2 distal-less homeobox 2 JBrowse link 2 172,099,438 172,102,750 RGD:2290271
G FGF8 fibroblast growth factor 8 JBrowse link 10 101,770,130 101,780,369 RGD:2290271
caudate nucleus development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXP2 forkhead box P2 JBrowse link 7 114,086,310 114,693,772 RGD:2290271
lateral ganglionic eminence cell proliferation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G GLI3 GLI family zinc finger 3 JBrowse link 7 41,960,949 42,237,019 RGD:2290271
nucleus accumbens development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 JBrowse link 15 100,879,692 100,916,626 RGD:2290271
putamen development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G FOXP2 forkhead box P2 JBrowse link 7 114,086,310 114,693,772 RGD:2290271
regulation of timing of subpallium neuron differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASCL1 achaete-scute family bHLH transcription factor 1 JBrowse link 12 102,957,674 102,960,516 RGD:2290271
striatal medium spiny neuron differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BCL11B BAF chromatin remodeling complex subunit BCL11B JBrowse link 14 99,169,287 99,271,713 RGD:2290271
G INHBA inhibin subunit beta A JBrowse link 7 41,685,101 41,710,532 RGD:2290271
G SHANK3 SH3 and multiple ankyrin repeat domains 3 JBrowse link 22 50,674,642 50,733,212 RGD:2290271
G ZSWIM6 zinc finger SWIM-type containing 6 JBrowse link 5 61,332,273 61,546,172 RGD:2290271
striatum development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BBS2 Bardet-Biedl syndrome 2 JBrowse link 16 56,470,403 56,520,096 RGD:2290271
G BBS4 Bardet-Biedl syndrome 4 JBrowse link 15 72,686,179 72,738,476 RGD:2290271
G CNTNAP2 contactin associated protein like 2 JBrowse link 7 146,116,207 148,420,998 RGD:2290271
G DRD1 dopamine receptor D1 JBrowse link 5 175,440,038 175,444,218 RGD:2290271
G DRD2 dopamine receptor D2 JBrowse link 11 113,409,595 113,475,279 RGD:2290271
G HPRT1 hypoxanthine phosphoribosyltransferase 1 JBrowse link X 134,460,145 134,500,668 RGD:2290271
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 40,224,890 40,369,285 RGD:2290271
G MKKS McKusick-Kaufman syndrome JBrowse link 20 10,404,780 10,434,239 RGD:2290271
G OGDH oxoglutarate dehydrogenase JBrowse link 7 44,606,522 44,709,070 RGD:2290271
G RARB retinoic acid receptor beta JBrowse link 3 24,829,323 25,597,932 RGD:2290271
G SECISBP2 SECIS binding protein 2 JBrowse link 9 89,318,473 89,367,117 RGD:2290271
G SLC7A11 solute carrier family 7 member 11 JBrowse link 4 138,164,094 138,242,349 RGD:2290271
G SLITRK5 SLIT and NTRK like family member 5 JBrowse link 13 87,671,232 87,679,619 RGD:2290271
subpallium neuron fate commitment term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ASCL1 achaete-scute family bHLH transcription factor 1 JBrowse link 12 102,957,674 102,960,516 RGD:2290271
G GSX2 GS homeobox 2 JBrowse link 4 54,100,081 54,101,955 RGD:2290271

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17688
    developmental process 6316
      anatomical structure development 5903
        subpallium development 25
          regulation of timing of subpallium neuron differentiation 1
          striatum development + 19
          subpallium cell migration + 0
          subpallium cell proliferation in forebrain + 1
          subpallium neuron fate commitment 2
Path 2
Term Annotations click to browse term
  biological_process 17688
    developmental process 6316
      anatomical structure development 5903
        multicellular organism development 5416
          system development 4869
            nervous system development 2395
              central nervous system development 1009
                brain development 751
                  forebrain development 393
                    telencephalon development 263
                      subpallium development 25
                        regulation of timing of subpallium neuron differentiation 1
                        striatum development + 19
                        subpallium cell migration + 0
                        subpallium cell proliferation in forebrain + 1
                        subpallium neuron fate commitment 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.