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ONTOLOGY REPORT - ANNOTATIONS


Term:cranial nerve development
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Accession:GO:0021545 term browser browse the term
Definition:The process whose specific outcome is the progression of the cranial nerves over time, from its formation to the mature structure. The cranial nerves are composed of twelve pairs of nerves that emanate from the nervous tissue of the hindbrain. These nerves are sensory, motor, or mixed in nature, and provide the motor and general sensory innervation of the head, neck and viscera. They mediate vision, hearing, olfaction and taste and carry the parasympathetic innervation of the autonomic ganglia that control visceral functions.


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cranial nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 ISO (PMID:9556299) RGD PMID:9556299 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Ephb1 Eph receptor B1 ISO MGI:MGI:2677305 (MGI:MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:MGI:2675767 NCBI chr 8:110,376,954...110,813,193
Ensembl chr 8:110,376,954...110,813,000
JBrowse link
G Erbb3 erb-b2 receptor tyrosine kinase 3 ISO
IEA
MGI:MGI:1929072|MGI:MGI:1929598 (MGI:MGI:1097830|PMID:9338783)
GO_REF:0000107
RGD
Ensembl
PMID:9338783 GO_REF:0000107, MGI:MGI:1097830 NCBI chr 7:2,989,202...3,010,610
Ensembl chr 7:2,989,340...3,010,350
JBrowse link
G Slc1a3 solute carrier family 1 member 3 ISO
IEA
MGI:MGI:1931872 (MGI:MGI:1202024|PMID:9753165)
GO_REF:0000107
RGD
Ensembl
PMID:9753165 GO_REF:0000107, MGI:MGI:1202024 NCBI chr 2:57,860,881...57,935,363
Ensembl chr 2:57,860,834...57,935,363
JBrowse link
abducens nerve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Mafb MAF bZIP transcription factor B ISO
ISS
(MGI:MGI:5816405|PMID:27181683)
GO_REF:0000024
RGD
UniProt
PMID:27181683 GO_REF:0000024, MGI:MGI:5816405 NCBI chr 3:156,338,993...156,340,913
Ensembl chr 3:156,339,004...156,340,913
JBrowse link
cranial ganglion development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISO
IEA
(MGI:MGI:1931800|PMID:11262227)
GO_REF:0000107
RGD
Ensembl
PMID:11262227 GO_REF:0000107, MGI:MGI:1931800 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
cranial nerve morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:MGI:2179740 (MGI:MGI:2179743|PMID:11694877) RGD PMID:11694877 MGI:MGI:2179743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786
JBrowse link
G Plxna4 plexin A4 ISO MGI:MGI:3578655 (MGI:MGI:3578029|PMID:15814794) RGD PMID:15814794 MGI:MGI:3578029 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
efferent axon development in a lateral line nerve term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2b paired-like homeobox 2b ISO MGI:MGI:1926861 (MGI:MGI:3621705|PMID:12885554) RGD PMID:12885554 MGI:MGI:3621705 NCBI chr14:42,711,169...42,718,707
Ensembl chr14:42,714,315...42,717,010
JBrowse link
facial nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor IEP RGD PMID:15356205 RGD:1580344 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
facial nerve morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 ISO
IEA
MGI:MGI:4840554 (MGI:MGI:4831065|PMID:20826656)
GO_REF:0000107
RGD
Ensembl
PMID:20826656 GO_REF:0000107, MGI:MGI:4831065 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
G Plxna4 plexin A4 ISO MGI:MGI:3578655 (MGI:MGI:3578029|PMID:15814794) RGD PMID:15814794 MGI:MGI:3578029 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:MGI:2655195 (MGI:MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:MGI:2671031 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
facial nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 ISS
ISO
GO_REF:0000024
MGI:MGI:96170 (MGI:MGI:1306866|PMID:9806922), (MGI:MGI:1331140|PMID:10068633), (MGI:MGI:69122|PMID:7935840)
UniProt
RGD
PMID:7935840, PMID:9806922, PMID:10068633 GO_REF:0000024, MGI:MGI:1306866, MGI:MGI:1331140, MGI:MGI:69122 NCBI chr20:22,452,170...22,461,018
Ensembl chr20:22,454,463...22,459,025
JBrowse link
G Hoxa1 homeobox A1 ISO MGI:MGI:95296 (MGI:MGI:1306866|PMID:9806922) RGD PMID:9806922 MGI:MGI:1306866 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Hoxb1 homeo box B1 ISO MGI:MGI:1857824 (MGI:MGI:83677|PMID:8898234) RGD PMID:8898234 MGI:MGI:83677 NCBI chr10:84,214,358...84,215,812
Ensembl chr10:84,214,358...84,215,687
JBrowse link
G Hoxb2 homeobox B2 ISO MGI:MGI:2151772 (MGI:MGI:85074|PMID:9012503) RGD PMID:9012503 MGI:MGI:85074 NCBI chr10:84,200,859...84,203,065
Ensembl chr10:84,200,880...84,202,688
JBrowse link
G Nrp1 neuropilin 1 ISO (MGI:MGI:3788968|PMID:18356247), (MGI:MGI:3822054|PMID:18804103) RGD PMID:18356247, PMID:18804103 MGI:MGI:3788968, MGI:MGI:3822054 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Plxna3 plexin A3 ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr  X:156,363,400...156,379,433
Ensembl chr  X:156,363,405...156,379,189
JBrowse link
G Plxna4 plexin A4 ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Sema3f semaphorin 3F ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
JBrowse link
facioacoustic ganglion development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
glossopharyngeal nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nav2 neuron navigator 2 ISO MGI:MGI:3054375 (MGI:MGI:4454971|PMID:20184720) RGD PMID:20184720 MGI:MGI:4454971 NCBI chr 1:104,575,765...104,941,554
Ensembl chr 1:104,576,589...104,941,552
JBrowse link
glossopharyngeal nerve morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa3 homeobox A3 ISO MGI:MGI:1857992|MGI:MGI:96184|MGI:MGI:96207 (MGI:MGI:1195045|PMID:9441667) RGD PMID:9441667 MGI:MGI:1195045 NCBI chr 4:82,137,802...82,181,836
Ensembl chr 4:82,138,683...82,141,385
JBrowse link
G Hoxb3 homeo box B3 ISO MGI:MGI:96175|MGI:MGI:96207 (MGI:MGI:1195045|PMID:9441667) RGD PMID:9441667 MGI:MGI:1195045 NCBI chr10:84,170,629...84,196,823
Ensembl chr10:84,182,118...84,195,796
JBrowse link
G Hoxd3 homeo box D3 ISO
IEA
MGI:MGI:96175|MGI:MGI:96184 (MGI:MGI:1195045|PMID:9441667)
GO_REF:0000107
RGD
Ensembl
PMID:9441667 GO_REF:0000107, MGI:MGI:1195045 NCBI chr 3:61,650,569...61,670,285
Ensembl chr 3:61,658,245...61,670,282
JBrowse link
G Plxna4 plexin A4 ISO MGI:MGI:3578655 (MGI:MGI:3578029|PMID:15814794) RGD PMID:15814794 MGI:MGI:3578029 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
hypoglossal nerve morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 ISO
IEA
MGI:MGI:4840554 (MGI:MGI:4831065|PMID:20826656)
GO_REF:0000107
RGD
Ensembl
PMID:20826656 GO_REF:0000107, MGI:MGI:4831065 NCBI chr20:11,972,352...12,101,022
Ensembl chr20:11,972,381...12,101,047
JBrowse link
oculomotor nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 ISO
IEA
MGI:MGI:104877 (MGI:MGI:2149154|PMID:11500373)
GO_REF:0000107
RGD
Ensembl
PMID:11500373 GO_REF:0000107, MGI:MGI:2149154 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes3 hes family bHLH transcription factor 3 ISO MGI:MGI:104853 (MGI:MGI:2149154|PMID:11500373) RGD PMID:11500373 MGI:MGI:2149154 NCBI chr 5:169,463,196...169,469,795
Ensembl chr 5:169,464,989...169,467,153
JBrowse link
oculomotor nerve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a ISO
IEA
(MGI:MGI:1098916|PMID:9374403)
GO_REF:0000107
RGD
Ensembl
PMID:9374403 GO_REF:0000107, MGI:MGI:1098916 NCBI chr 1:166,893,734...166,898,252
Ensembl chr 1:166,893,734...166,898,252
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:80519|PMID:8622766)
GO_REF:0000024
RGD
UniProt
PMID:8622766 GO_REF:0000024, MGI:MGI:80519 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
olfactory nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 ISO (MGI:MGI:3843558|PMID:19279158) RGD PMID:19279158 MGI:MGI:3843558 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Ntrk1 neurotrophic receptor tyrosine kinase 1 IEP RGD PMID:8778281 RGD:5684018 NCBI chr 2:187,143,568...187,160,373
Ensembl chr 2:187,143,568...187,160,373
JBrowse link
G Rtn4 reticulon 4 IEP RGD PMID:16262653 RGD:2314966 NCBI chr14:114,126,931...114,174,459
Ensembl chr14:114,126,943...114,174,458
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO MGI:MGI:2388379 (MGI:MGI:4420747|PMID:18024993) RGD PMID:18024993 MGI:MGI:4420747 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
olfactory nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmd dystrophin ISO MGI:MGI:3531484 (MGI:MGI:3805594|PMID:18586242) RGD PMID:18586242 MGI:MGI:3805594 NCBI chr  X:51,149,358...53,519,271
Ensembl chr  X:51,286,737...53,519,259
JBrowse link
optic chiasma development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
optic nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh7 atonal bHLH transcription factor 7 ISO (PMID:21441919) RGD PMID:21441919 NCBI chr20:27,082,961...27,083,410
Ensembl chr20:27,082,961...27,083,410
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO (MGI:MGI:5311271|PMID:21743013) RGD PMID:21743013 MGI:MGI:5311271 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Kcnj10 potassium inwardly-rectifying channel, subfamily J, member 10 IEP RGD PMID:15198689 RGD:2326047 NCBI chr13:90,722,945...90,753,338
Ensembl chr13:90,723,092...90,752,581
JBrowse link
G Lpar1 lysophosphatidic acid receptor 1 IEP RGD PMID:12139919 RGD:727395 NCBI chr 5:75,557,038...75,678,067
Ensembl chr 5:75,557,042...75,676,584
JBrowse link
G Nav2 neuron navigator 2 ISO MGI:MGI:3054375 (MGI:MGI:3051916|PMID:15158073) RGD PMID:15158073 MGI:MGI:3051916 NCBI chr 1:104,575,765...104,941,554
Ensembl chr 1:104,576,589...104,941,552
JBrowse link
G Nkx2-2 NK2 homeobox 2 IEP RGD PMID:15048854 RGD:2306244 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Rpl24 ribosomal protein L24 ISO MGI:MGI:1856685 (MGI:MGI:1097191|PMID:9331275) RGD PMID:9331275 MGI:MGI:1097191 NCBI chr11:47,116,885...47,122,093
Ensembl chr11:47,116,886...47,122,095
JBrowse link
G Slc25a46 solute carrier family 25, member 46 ISO MGI:MGI:6358090 (MGI:MGI:5921109|PMID:28934388) RGD PMID:28934388 MGI:MGI:5921109 NCBI chr18:24,369,104...24,397,412
Ensembl chr18:24,369,125...24,397,551
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 ISO MGI:MGI:3852642 (MGI:MGI:4819740|PMID:20711468) RGD PMID:20711468 MGI:MGI:4819740 NCBI chr 1:219,126,687...219,139,466
Ensembl chr 1:219,127,602...219,139,464
JBrowse link
G Tmem126a transmembrane protein 126A ISO (PMID:19327736) RGD PMID:19327736 NCBI chr 1:156,283,105...156,291,057
Ensembl chr 1:156,283,128...156,291,052
JBrowse link
optic nerve morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO MGI:MGI:1926253|MGI:MGI:2158714 (MGI:MGI:2181503|PMID:11344259), (MGI:MGI:3721829|PMID:12097474) RGD PMID:11344259, PMID:12097474 MGI:MGI:2181503, MGI:MGI:3721829 NCBI chr 2:189,088,570...189,096,785
Ensembl chr 2:189,088,570...189,096,785
JBrowse link
G Ephb1 Eph receptor B1 ISO MGI:MGI:2677305 (MGI:MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:MGI:2675767 NCBI chr 8:110,376,954...110,813,193
Ensembl chr 8:110,376,954...110,813,000
JBrowse link
G Ephb2 Eph receptor B2 ISO MGI:MGI:2149765 (MGI:MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:MGI:2675767 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:1856276 (MGI:MGI:3617688|PMID:16342201) RGD PMID:16342201 MGI:MGI:3617688 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
optic nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcna2 potassium voltage-gated channel subfamily A member 2 ISO MGI:MGI:3043422 (MGI:MGI:3042560|PMID:15102918) RGD PMID:15102918 MGI:MGI:3042560 NCBI chr 2:209,838,607...209,852,471
Ensembl chr 2:209,838,869...209,852,471
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
positive regulation of optic nerve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:5009386|PMID:18083586)
GO_REF:0000024
RGD
UniProt
PMID:18083586 GO_REF:0000024, MGI:MGI:5009386 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
trigeminal ganglion development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Six1 SIX homeobox 1 ISO (MGI:MGI:3689152|PMID:16938278) RGD PMID:16938278 MGI:MGI:3689152 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Six4 SIX homeobox 4 ISO (MGI:MGI:3689152|PMID:16938278) RGD PMID:16938278 MGI:MGI:3689152 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529
JBrowse link
trigeminal nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drgx dorsal root ganglia homeobox ISO
IEA
MGI:MGI:2182636 (MGI:MGI:2670488|PMID:12917357)
GO_REF:0000107
RGD
Ensembl
PMID:12917357 GO_REF:0000107, MGI:MGI:2670488 NCBI chr16:8,823,872...8,853,430
Ensembl chr16:8,823,872...8,853,430
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO (MGI:MGI:3815381|PMID:18849985) RGD PMID:18849985 MGI:MGI:3815381 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Pou4f1 POU class 4 homeobox 1 ISO
IEA
(MGI:MGI:4367920|PMID:19877281)
GO_REF:0000107
RGD
Ensembl
PMID:19877281 GO_REF:0000107, MGI:MGI:4367920 NCBI chr15:88,618,255...88,622,712
Ensembl chr15:88,620,470...88,622,413
JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
ISS
(MGI:MGI:80519|PMID:8622766)
GO_REF:0000024
RGD
UniProt
PMID:8622766 GO_REF:0000024, MGI:MGI:80519 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
trigeminal nerve morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO MGI:MGI:1857853 (MGI:MGI:3578029|PMID:15814794) RGD PMID:15814794 MGI:MGI:3578029 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Plxna4 plexin A4 ISO MGI:MGI:3578655 (MGI:MGI:3578029|PMID:15814794) RGD PMID:15814794 MGI:MGI:3578029 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
trigeminal nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Plxna3 plexin A3 ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr  X:156,363,400...156,379,433
Ensembl chr  X:156,363,405...156,379,189
JBrowse link
G Plxna4 plexin A4 ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Sema3f semaphorin 3F ISO (MGI:MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:MGI:3822054 NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
JBrowse link
trochlear nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 ISO
IEA
MGI:MGI:104877 (MGI:MGI:2149154|PMID:11500373)
GO_REF:0000107
RGD
Ensembl
PMID:11500373 GO_REF:0000107, MGI:MGI:2149154 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes3 hes family bHLH transcription factor 3 ISO MGI:MGI:104853 (MGI:MGI:2149154|PMID:11500373) RGD PMID:11500373 MGI:MGI:2149154 NCBI chr 5:169,463,196...169,469,795
Ensembl chr 5:169,464,989...169,467,153
JBrowse link
trochlear nerve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a ISO
IEA
(MGI:MGI:1098916|PMID:9374403)
GO_REF:0000107
RGD
Ensembl
PMID:9374403 GO_REF:0000107, MGI:MGI:1098916 NCBI chr 1:166,893,734...166,898,252
Ensembl chr 1:166,893,734...166,898,252
JBrowse link
vagus nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nav2 neuron navigator 2 ISO MGI:MGI:3054375 (MGI:MGI:4454971|PMID:20184720) RGD PMID:20184720 MGI:MGI:4454971 NCBI chr 1:104,575,765...104,941,554
Ensembl chr 1:104,576,589...104,941,552
JBrowse link
vagus nerve morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plxna4 plexin A4 ISO MGI:MGI:3578655 (MGI:MGI:3578029|PMID:15814794) RGD PMID:15814794 MGI:MGI:3578029 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS
MGI:MGI:2179136 (MGI:MGI:4948210|PMID:20939858)
GO_REF:0000024
RGD
UniProt
PMID:20939858 GO_REF:0000024, MGI:MGI:4948210 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969
JBrowse link
vestibulocochlear nerve development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO (MGI:MGI:3579229|PMID:15788760) RGD PMID:15788760 MGI:MGI:3579229 NCBI chr 2:189,088,570...189,096,785
Ensembl chr 2:189,088,570...189,096,785
JBrowse link
G Pou4f3 POU class 4 homeobox 3 ISO MGI:MGI:1857425 (MGI:MGI:2451279|PMID:12585968) RGD PMID:12585968 MGI:MGI:2451279 NCBI chr18:36,713,869...36,716,461
Ensembl chr18:36,713,869...36,716,461
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:MGI:4417931 (MGI:MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:MGI:4413621 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259
JBrowse link
vestibulocochlear nerve formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp8b1 ATPase phospholipid transporting 8B1 ISO (MGI:MGI:3849653|PMID:19478059) RGD PMID:19478059 MGI:MGI:3849653 NCBI chr18:60,013,388...60,152,920
Ensembl chr18:60,013,382...60,095,354
JBrowse link
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175
JBrowse link
G Pax2 paired box 2 ISO
ISS
(MGI:MGI:84247|PMID:8951055)
GO_REF:0000024
RGD
UniProt
PMID:8951055 GO_REF:0000024, MGI:MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265
JBrowse link
vestibulocochlear nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:MGI:3788968 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        nerve development 91
          cranial nerve development 57
            abducens nerve development + 2
            accessory nerve development + 0
            cranial ganglion development + 6
            cranial nerve maturation + 0
            cranial nerve morphogenesis + 30
            facial nerve development + 13
            glossopharyngeal nerve development + 5
            hypoglossal nerve development + 1
            lateral line nerve development + 1
            oculomotor nerve development + 4
            olfactory nerve development + 5
            optic nerve development + 16
            trigeminal nerve development + 11
            trochlear nerve development + 3
            vagus nerve development + 3
            vestibulocochlear nerve development + 9
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            nervous system development 2716
              nerve development 91
                cranial nerve development 57
                  abducens nerve development + 2
                  accessory nerve development + 0
                  cranial ganglion development + 6
                  cranial nerve maturation + 0
                  cranial nerve morphogenesis + 30
                  facial nerve development + 13
                  glossopharyngeal nerve development + 5
                  hypoglossal nerve development + 1
                  lateral line nerve development + 1
                  oculomotor nerve development + 4
                  olfactory nerve development + 5
                  optic nerve development + 16
                  trigeminal nerve development + 11
                  trochlear nerve development + 3
                  vagus nerve development + 3
                  vestibulocochlear nerve development + 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.