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ONTOLOGY REPORT - ANNOTATIONS


Term:pons development
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Accession:GO:0021548 term browser browse the term
Definition:The process whose specific outcome is the progression of the pons over time, from its formation to the mature structure. The pons lies above the medulla and next to the cerebellum. The pons conveys information about movement from the cerebral hemisphere to the cerebellum.


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pons development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,779,132...38,782,489
Ensembl chr10:38,779,132...38,782,419
JBrowse link
cochlear nucleus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator ISO
IEA
MGI:MGI:1857134 (MGI:MGI:1891561|PMID:11027399)
GO_REF:0000107
RGD
Ensembl
PMID:11027399 GO_REF:0000107, MGI:MGI:1891561 NCBI chr13:26,605,426...26,769,374
Ensembl chr13:26,605,426...26,769,374
JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:MGI:2139764 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:MGI:2145950|MGI:MGI:4440621 (MGI:MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919
JBrowse link
G Slc4a7 solute carrier family 4 member 7 ISO MGI:MGI:2682641 (MGI:MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:MGI:2680888 NCBI chr15:11,832,611...11,912,923
Ensembl chr15:11,836,286...11,912,916
JBrowse link
facial nucleus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 ISO MGI:MGI:1857504 (MGI:MGI:62658|PMID:8102800) RGD PMID:8102800 MGI:MGI:62658 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Hoxb1 homeo box B1 ISO MGI:MGI:1857824 (MGI:MGI:83677|PMID:8898234) RGD PMID:8898234 MGI:MGI:83677 NCBI chr10:84,214,358...84,215,812
Ensembl chr10:84,214,358...84,215,687
JBrowse link
locus ceruleus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a ISO
IEA
MGI:MGI:2180328|MGI:MGI:4438118 (MGI:MGI:4849589|PMID:21068058), (MGI:MGI:86465|PMID:9115735)
GO_REF:0000107
RGD
Ensembl
PMID:9115735, PMID:21068058 GO_REF:0000107, MGI:MGI:4849589, MGI:MGI:86465 NCBI chr 1:166,893,734...166,898,252
Ensembl chr 1:166,893,734...166,898,252
JBrowse link
pons maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 ISO
IEA
MGI:MGI:1928270 (MGI:MGI:65431|PMID:8313466)
GO_REF:0000107
RGD
Ensembl
PMID:8313466 GO_REF:0000107, MGI:MGI:65431 NCBI chr 3:2,507,745...2,534,664
Ensembl chr 3:2,506,896...2,534,663
JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 ISO MGI:MGI:1330828 (MGI:MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:MGI:2149271 NCBI chr10:67,862,054...67,863,255
Ensembl chr10:67,862,054...67,863,255
JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 ISO MGI:MGI:101764 (MGI:MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:MGI:2149271 NCBI chr 9:82,120,059...82,121,527
Ensembl chr 9:82,120,059...82,121,527
JBrowse link
vestibular nucleus development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:MGI:1857470 (MGI:MGI:3621705|PMID:12885554) RGD PMID:12885554 MGI:MGI:3621705 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A ISO
IEA
MGI:MGI:1856210 (MGI:MGI:77774|PMID:8719615)
GO_REF:0000107
RGD
Ensembl
PMID:8719615 GO_REF:0000107, MGI:MGI:77774 NCBI chr19:25,453,236...25,749,550
Ensembl chr19:25,526,751...25,749,550
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        pons development 13
          abducens nucleus development 0
          cochlear nucleus development + 4
          facial nucleus development 2
          locus ceruleus development + 1
          pons maturation + 3
          pons morphogenesis + 0
          salivary nucleus development + 0
          superior olivary nucleus development + 2
          trigeminal motor nucleus development 0
          vestibular nucleus development 2
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            nervous system development 2716
              central nervous system development 1257
                brain development 963
                  hindbrain development 217
                    metencephalon development 166
                      pons development 13
                        abducens nucleus development 0
                        cochlear nucleus development + 4
                        facial nucleus development 2
                        locus ceruleus development + 1
                        pons maturation + 3
                        pons morphogenesis + 0
                        salivary nucleus development + 0
                        superior olivary nucleus development + 2
                        trigeminal motor nucleus development 0
                        vestibular nucleus development 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.