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ONTOLOGY REPORT - ANNOTATIONS


Term:hindbrain morphogenesis
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Accession:GO:0021575 term browser browse the term
Definition:The process in which the anatomical structure of the hindbrain is generated and organized. The hindbrain is the region consisting of the medulla, pons and cerebellum. Areas of the hindbrain control motor and autonomic functions.
Synonyms:related_synonym: rhombencephalon morphogenesis


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hindbrain morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlc1 DLC1 Rho GTPase activating protein ISO MGI:3529997 (MGI:3529660|PMID:15710412) RGD PMID:15710412 MGI:3529660 NCBI chr16:58,776,489...59,247,752
Ensembl chr16:59,077,574...59,247,754
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:2150162 (MGI:1099899|PMID:9398437) RGD PMID:9398437 MGI:1099899 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Hes1 hes family bHLH transcription factor 1 IEA
ISO
GO_REF:0000107
MGI:104877 (MGI:2149154|PMID:11500373)
Ensembl
RGD
PMID:11500373 GO_REF:0000107, MGI:2149154 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes3 hes family bHLH transcription factor 3 ISO MGI:104853 (MGI:2149154|PMID:11500373) RGD PMID:11500373 MGI:2149154 NCBI chr 5:169,463,196...169,469,795
Ensembl chr 5:169,464,989...169,467,153
JBrowse link
cerebellar cortex formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5 cyclin-dependent kinase 5 ISO MGI:1861809 (MGI:1340775|PMID:10407039) RGD PMID:10407039 MGI:1340775 NCBI chr 4:7,282,945...7,287,427
Ensembl chr 4:7,282,948...7,288,383
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IEA
ISO
GO_REF:0000107
MGI:99511 (MGI:5545830|PMID:24431450)
Ensembl
RGD
PMID:24431450 GO_REF:0000107, MGI:5545830 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 ISO MGI:1346866|MGI:4868451 (MGI:5545830|PMID:24431450) RGD PMID:24431450 MGI:5545830 NCBI chr12:40,895,515...40,955,999
Ensembl chr12:40,895,515...40,955,999
JBrowse link
cerebellar cortex morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 ISO MGI:95728 (MGI:3624180|PMID:16571625) RGD PMID:16571625 MGI:3624180 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338
JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:2446434|MGI:3664541|MGI:95727 (MGI:3624180|PMID:16571625) RGD PMID:16571625 MGI:3624180 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Pcnt pericentrin ISO MGI:3799303 (MGI:4438783|PMID:20096683) RGD PMID:20096683 MGI:4438783 NCBI chr20:12,943,523...13,038,615
Ensembl chr20:12,944,786...13,038,431
JBrowse link
G Rfx4 regulatory factor X4 ISO (MGI:2669568|PMID:12925582) RGD PMID:12925582 MGI:2669568 NCBI chr 7:25,831,358...25,909,976
Ensembl chr 7:25,808,419...25,907,849
JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
GO_REF:0000107
MGI:2176173|MGI:2176256 (MGI:3624180|PMID:16571625)
Ensembl
RGD
PMID:16571625 GO_REF:0000107, MGI:3624180 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770
JBrowse link
G Trnp1 TMF1-regulated nuclear protein 1 ISO (MGI:5490679|PMID:23622239) RGD PMID:23622239 MGI:5490679 NCBI chr 5:151,703,139...151,709,988
Ensembl chr 5:151,709,200...151,709,877
JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp9x ubiquitin specific peptidase 9, X-linked ISO MGI:5438072 (MGI:5532214|PMID:23861879) RGD PMID:23861879 MGI:5532214 NCBI chr  X:10,510,033...10,660,555
Ensembl chr  X:10,510,033...10,630,297
JBrowse link
cerebellar granular layer morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpine2 serpin family E member 2 IEA
ISO
GO_REF:0000107
MGI:2387774 (MGI:3709698|PMID:17409116)
Ensembl
RGD
PMID:17409116 GO_REF:0000107, MGI:3709698 NCBI chr 9:85,560,852...85,629,410
Ensembl chr 9:85,560,863...85,626,094
JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 ISO (MGI:5485315|PMID:23308235) RGD PMID:23308235 MGI:5485315 NCBI chr13:53,350,073...53,421,992
Ensembl chr13:53,351,717...53,420,111
JBrowse link
cerebellar granule cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:1857876 (MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:1275896 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Cbln1 cerebellin 1 precursor ISS
ISO
GO_REF:0000024
UniProtKB:Q61625 (MGI:4839424|PMID:20537373)
BHF-UCL
RGD
PMID:20537373 GO_REF:0000024, MGI:4839424 NCBI chr19:20,607,507...20,611,316
Ensembl chr19:20,607,507...20,611,316
JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 IEA
ISO
ISS
GO_REF:0000107
UniProtKB:Q9R171 (MGI:4839424|PMID:20537373)
GO_REF:0000024
Ensembl
RGD
BHF-UCL
PMID:20537373 GO_REF:0000024, GO_REF:0000107, MGI:4839424 NCBI chr 4:94,068,112...95,476,864
Ensembl chr 4:94,696,965...95,442,778
JBrowse link
G Kndc1 kinase non-catalytic C-lobe domain containing 1 ISO (MGI:3769586|PMID:17984326) RGD PMID:17984326 MGI:3769586 NCBI chr 1:212,229,751...212,279,254
Ensembl chr 1:212,230,259...212,277,694
JBrowse link
G Mtpn myotrophin IEP RGD PMID:8144589 RGD:632797 NCBI chr 4:63,012,009...63,039,422
Ensembl chr 4:63,012,011...63,039,422
JBrowse link
G Nfix nuclear factor I X ISO MGI:3802571 (MGI:5436217|PMID:21800304) RGD PMID:21800304 MGI:5436217 NCBI chr19:25,818,640...25,914,777
Ensembl chr19:25,821,780...25,914,696
JBrowse link
G Nrxn1 neurexin 1 ISS
ISO
GO_REF:0000024
UniProtKB:Q61625|UniProtKB:Q9R171 (MGI:4839424|PMID:20537373)
BHF-UCL
RGD
PMID:20537373 GO_REF:0000024, MGI:4839424 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Ophn1 oligophrenin 1 ISO (PMID:27160703) RGD PMID:27160703 NCBI chr  X:68,185,865...68,579,518
Ensembl chr  X:68,189,161...68,563,137
JBrowse link
G Prox1 prospero homeobox 1 ISO (MGI:4849596|PMID:20808958) RGD PMID:20808958 MGI:4849596 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294
JBrowse link
G Top2a DNA topoisomerase II alpha IEP RGD PMID:11170002 RGD:8693630 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
G Ulk1 unc-51 like autophagy activating kinase 1 ISO (MGI:1351063|PMID:10624947) RGD PMID:10624947 MGI:1351063 NCBI chr12:51,908,105...51,934,704
Ensembl chr12:51,908,448...51,934,702
JBrowse link
G Wnt7a Wnt family member 7A ISO (MGI:1195230|PMID:9405095) RGD PMID:9405095 MGI:1195230 NCBI chr 4:122,994,425...123,040,609
Ensembl chr 4:122,994,425...123,040,609
JBrowse link
cerebellar molecular layer formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 IEA
ISO
ISS
GO_REF:0000107
(MGI:5504540|PMID:23688253)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23688253 GO_REF:0000024, GO_REF:0000107, MGI:5504540 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
cerebellar molecular layer morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp365 zinc finger protein 365 ISS
ISO
GO_REF:0000024
(MGI:5559035|PMID:23912123)
UniProt
RGD
PMID:23912123 GO_REF:0000024, MGI:5559035 NCBI chr20:22,060,160...22,083,766
Ensembl chr20:22,060,224...22,086,108
JBrowse link
cerebellar Purkinje cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:5,510,009...5,614,416
Ensembl chr17:5,511,385...5,614,435
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:1857876 (MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:1275896 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Atp7a ATPase copper transporting alpha ISO MGI:1856466 (MGI:71790|PMID:2473662) RGD PMID:2473662 MGI:71790 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Atxn2 ataxin 2 ISO MGI:3505741 (MGI:3510013|PMID:10973246) RGD PMID:10973246 MGI:3510013 NCBI chr12:40,264,601...40,335,637
Ensembl chr12:40,266,662...40,332,612
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A IEA
ISO
GO_REF:0000107
MGI:1856209|MGI:1856210 (MGI:1347769|PMID:10630211), (MGI:62667|PMID:1306163), (MGI:68980|PMID:7834360)
Ensembl
RGD
PMID:1306163, PMID:7834360, PMID:10630211 GO_REF:0000107, MGI:1347769, MGI:62667, MGI:68980 NCBI chr19:25,453,236...25,749,550
Ensembl chr19:25,526,751...25,749,550
JBrowse link
G Cend1 cell cycle exit and neuronal differentiation 1 IBA
ISO
PMID:21873635
MGI:4831137 (MGI:4830814|PMID:20153830)
RGD PMID:20153830, PMID:21873635 MGI:4830814, RGD:13792537 NCBI chr 1:214,407,072...214,410,069
Ensembl chr 1:214,408,100...214,408,549
JBrowse link
G Faim2 Fas apoptotic inhibitory molecule 2 ISS
ISO
GO_REF:0000024
(MGI:5295128|PMID:21957071)
UniProt
RGD
PMID:21957071 GO_REF:0000024, MGI:5295128 NCBI chr 7:141,158,769...141,185,781
Ensembl chr 7:141,157,963...141,185,710
JBrowse link
G Herc1 HECT and RLD domain containing E3 ubiquitin protein ligase family member 1 ISO MGI:3613033 (MGI:4461108|PMID:20041218) RGD PMID:20041218 MGI:4461108 NCBI chr 8:72,029,550...72,198,363
Ensembl chr 8:72,029,489...72,198,358
JBrowse link
G Ldb1 LIM domain binding 1 ISO MGI:3719683 (MGI:3718715|PMID:17664423) RGD PMID:17664423 MGI:3718715 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167
JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO
GO_REF:0000024
MGI:107792 (MGI:3718715|PMID:17664423)
UniProt
RGD
PMID:17664423 GO_REF:0000024, MGI:3718715 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293
JBrowse link
G Lhx5 LIM homeobox 5 ISO MGI:99783 (MGI:3718715|PMID:17664423) RGD PMID:17664423 MGI:3718715 NCBI chr12:41,663,000...41,671,437
Ensembl chr12:41,663,000...41,671,437
JBrowse link
G LOC100911402 cell cycle exit and neuronal differentiation protein 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:213,970,163...213,973,224
Ensembl chr 1:213,970,174...213,973,163
JBrowse link
G Psap prosaposin IEA
ISO
GO_REF:0000107
MGI:3521746 (MGI:3512714|PMID:15345707)
Ensembl
RGD
PMID:15345707 GO_REF:0000107, MGI:3512714 NCBI chr20:29,831,302...29,856,876
Ensembl chr20:29,831,314...29,856,875
JBrowse link
G Rora RAR-related orphan receptor A ISO MGI:1857035 (MGI:86446|PMID:8996814) RGD PMID:8996814 MGI:86446 NCBI chr 8:75,515,886...75,616,477
Ensembl chr 8:75,516,904...75,607,212
JBrowse link
G Skor2 SKI family transcriptional corepressor 2 ISO MGI:5300464 (MGI:5300220|PMID:21937600), (MGI:5565016|PMID:24491816) RGD PMID:21937600, PMID:24491816 MGI:5300220, MGI:5565016 NCBI chr18:73,145,596...73,199,395
Ensembl chr18:73,157,973...73,193,377
JBrowse link
G Slc25a46 solute carrier family 25, member 46 ISO MGI:6358090 (MGI:5921109|PMID:28934388) RGD PMID:28934388 MGI:5921109 NCBI chr18:24,369,104...24,397,412
Ensembl chr18:24,369,125...24,397,551
JBrowse link
G Top2a DNA topoisomerase II alpha IEP RGD PMID:11170002 RGD:8693630 NCBI chr10:86,901,467...86,930,947
Ensembl chr10:86,901,007...86,932,154
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B ISO MGI:2137515|MGI:2152544|MGI:2179048|MGI:5587034 (MGI:6152587|PMID:29615573) RGD PMID:29615573 MGI:6152587 NCBI chr 3:52,286,794...52,361,060
Ensembl chr 3:52,286,794...52,361,060
JBrowse link
G Ttll1 tubulin tyrosine ligase like 1 ISO MGI:1918244 (MGI:6269036|PMID:30420556) RGD PMID:30420556 MGI:6269036 NCBI chr 7:124,338,396...124,367,719
Ensembl chr 7:124,338,395...124,367,630
JBrowse link
cerebellar Purkinje cell layer formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gba glucosylceramidase beta ISO (MGI:3762988|PMID:17954912) RGD PMID:17954912 MGI:3762988 NCBI chr 2:188,511,781...188,522,602
Ensembl chr 2:188,516,582...188,522,601
JBrowse link
G Whrn whirlin IEA
ISO
GO_REF:0000107
(MGI:5516521|PMID:24011083)
Ensembl
RGD
PMID:24011083 GO_REF:0000107, MGI:5516521 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206
JBrowse link
cerebellar Purkinje cell layer morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:1857876 (MGI:3709537|PMID:17409239) RGD PMID:17409239 MGI:3709537 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Coq8b coenzyme Q8B ISO
ISS
(PMID:27499294)
GO_REF:0000024
RGD
UniProt
PMID:27499294 GO_REF:0000024 NCBI chr 1:84,043,487...84,067,066
Ensembl chr 1:84,044,551...84,067,066
JBrowse link
G Sptbn2 spectrin, beta, non-erythrocytic 2 IEA
ISO
GO_REF:0000107
MGI:4127354 (MGI:4438955|PMID:20231455)
Ensembl
RGD
PMID:20231455 GO_REF:0000107, MGI:4438955 NCBI chr 1:219,964,429...220,006,811
Ensembl chr 1:219,964,429...220,005,068
JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 IEA
ISO
ISS
GO_REF:0000107
(MGI:5504540|PMID:23688253)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:23688253 GO_REF:0000024, GO_REF:0000107, MGI:5504540 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Kif14 kinesin family member 14 ISO (MGI:5485315|PMID:23308235) RGD PMID:23308235 MGI:5485315 NCBI chr13:53,350,073...53,421,992
Ensembl chr13:53,351,717...53,420,111
JBrowse link
cerebellum formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 ISO (MGI:1931348|PMID:2202907) RGD PMID:2202907 MGI:1931348 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
cerebellum morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase ISO MGI:87860 (MGI:4840122|PMID:20980600) RGD PMID:20980600 MGI:4840122 NCBI chr 3:10,041,820...10,145,076
Ensembl chr 3:10,041,826...10,144,388
JBrowse link
G Abl2 ABL proto-oncogene 2, non-receptor tyrosine kinase ISO MGI:87859 (MGI:4840122|PMID:20980600) RGD PMID:20980600 MGI:4840122 NCBI chr13:74,154,533...74,333,244
Ensembl chr13:74,154,835...74,333,244
JBrowse link
G Cbs cystathionine beta synthase ISO MGI:1857139 (MGI:3607901|PMID:16160063) RGD PMID:16160063 MGI:3607901 NCBI chr20:10,361,987...10,386,663
Ensembl chr20:10,361,988...10,386,751
JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:2388397 (MGI:2138056|PMID:11456442) RGD PMID:11456442 MGI:2138056 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940
JBrowse link
G Gnpat glyceronephosphate O-acyltransferase ISO MGI:2670461 (MGI:3843561|PMID:19270340) RGD PMID:19270340 MGI:3843561 NCBI chr19:57,614,813...57,640,524
Ensembl chr19:57,614,628...57,640,726
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta ISO MGI:2158463 (MGI:3695500|PMID:17166916) RGD PMID:17166916 MGI:3695500 NCBI chr 3:12,608,748...12,686,937
Ensembl chr 3:12,609,574...12,686,869
JBrowse link
G Lrp6 LDL receptor related protein 6 IBA
ISO
PMID:21873635
MGI:2156191 (MGI:1891551|PMID:11029008)
RGD PMID:11029008, PMID:21873635 MGI:1891551, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Skor2 SKI family transcriptional corepressor 2 ISO MGI:5300464 (MGI:5300220|PMID:21937600) RGD PMID:21937600 MGI:5300220 NCBI chr18:73,145,596...73,199,395
Ensembl chr18:73,157,973...73,193,377
JBrowse link
G Xrcc1 X-ray repair cross complementing 1 ISO (MGI:5902647|PMID:28002403) RGD PMID:28002403 MGI:5902647 NCBI chr 1:81,412,635...81,441,680
Ensembl chr 1:81,413,353...81,441,678
JBrowse link
cerebellum structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 ISO MGI:1861918 (MGI:1098179|PMID:9338785) RGD PMID:9338785 MGI:1098179 NCBI chr 5:123,154,360...124,279,170
Ensembl chr 5:123,905,166...124,280,115
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO (MGI:4437543|PMID:19816510) RGD PMID:19816510 MGI:4437543 NCBI chr 3:13,838,304...13,842,763
Ensembl chr 3:13,838,304...13,842,762
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure morphogenesis 2879
        hindbrain morphogenesis 62
          cerebellum morphogenesis + 58
          hindbrain formation + 1
          hindbrain structural organization + 2
          medulla oblongata morphogenesis + 0
          pons morphogenesis + 0
Path 2
Term Annotations click to browse term
  biological_process 20020
    developmental process 6826
      anatomical structure development 6268
        multicellular organism development 5743
          system development 5279
            nervous system development 2719
              central nervous system development 1260
                brain development 965
                  hindbrain development 218
                    hindbrain morphogenesis 62
                      cerebellum morphogenesis + 58
                      hindbrain formation + 1
                      hindbrain structural organization + 2
                      medulla oblongata morphogenesis + 0
                      pons morphogenesis + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.