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ONTOLOGY REPORT - ANNOTATIONS


Term:ventricular system development
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Accession:GO:0021591 term browser browse the term
Definition:The process whose specific outcome is the progression of the brain ventricular system over time, from its formation to the mature structure. The brain ventricular system consists of four communicating cavities within the brain that are continuous with the central canal of the spinal cord. These cavities include two lateral ventricles, the third ventricle and the fourth ventricle. Cerebrospinal fluid fills the ventricles and is produced by the choroid plexus.


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ventricular system development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak8 adenylate kinase 8 ISO MGI:MGI:5429197 (MGI:MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:MGI:5429171 NCBI chr 3:7,279,429...7,394,509
Ensembl chr 3:7,279,340...7,394,513
JBrowse link
G Anp32b acidic nuclear phosphoprotein 32 family member B ISO
IEA
MGI:MGI:5003050 (MGI:MGI:5003056|PMID:21636789)
GO_REF:0000107
RGD
Ensembl
PMID:21636789 GO_REF:0000107, MGI:MGI:5003056 NCBI chr 5:62,070,709...62,094,633
Ensembl chr 5:62,071,346...62,094,633
JBrowse link
G Armc4 armadillo repeat containing 4 ISO MGI:MGI:5311373 (MGI:MGI:5551687|PMID:23849778) RGD PMID:23849778 MGI:MGI:5551687 NCBI chr17:60,283,926...60,474,289
Ensembl chr17:60,287,203...60,474,031
JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 ISO MGI:MGI:3767672|MGI:MGI:4837746|MGI:MGI:5474481 (MGI:MGI:5470340|PMID:23160237) RGD PMID:23160237 MGI:MGI:5470340 NCBI chr 1:220,146,084...220,165,545
Ensembl chr 1:220,147,327...220,165,678
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO MGI:MGI:3045473 (MGI:MGI:5604561|PMID:24695551) RGD PMID:24695551 MGI:MGI:5604561 NCBI chr 8:64,115,005...64,154,432
Ensembl chr 8:64,121,392...64,154,396
JBrowse link
G Ccdc134 coiled-coil domain containing 134 ISO MGI:MGI:6117856 (MGI:MGI:6112839|PMID:29115376) RGD PMID:29115376 MGI:MGI:6112839 NCBI chr 7:123,362,471...123,376,930
Ensembl chr 7:123,364,312...123,376,221
JBrowse link
G Celsr2 cadherin, EGF LAG seven-pass G-type receptor 2 ISO
IEA
MGI:MGI:5429210 (MGI:MGI:5429171|PMID:21746835)
GO_REF:0000107
RGD
Ensembl
PMID:21746835 GO_REF:0000107, MGI:MGI:5429171 NCBI chr 2:211,183,410...211,207,458
Ensembl chr 2:211,183,311...211,207,465
JBrowse link
G Cenpf centromere protein F ISO (PMID:25564561) RGD PMID:25564561 NCBI chr13:108,132,499...108,178,609
Ensembl chr13:108,132,499...108,178,609
JBrowse link
G Dpcd deleted in primary ciliary dyskinesia ISO MGI:MGI:4262238 (MGI:MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:MGI:5429171 NCBI chr 1:265,298,872...265,318,521
Ensembl chr 1:265,298,868...265,317,860
JBrowse link
G Hydin Hydin, axonemal central pair apparatus protein ISO MGI:MGI:1856913 (MGI:MGI:3793384|PMID:18250199), (MGI:MGI:53855|PMID:4732188) RGD PMID:4732188, PMID:18250199 MGI:MGI:3793384, MGI:MGI:53855, MGI:MGI:61244, MGI:MGI:61312, MGI:MGI:71926 NCBI chr19:41,036,507...41,379,634
Ensembl chr19:41,036,510...41,379,588
JBrowse link
G Kif27 kinesin family member 27 ISO MGI:MGI:4318693 (MGI:MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:MGI:5429171 NCBI chr17:6,701,287...6,776,599
Ensembl chr17:6,701,315...6,772,349
JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 ISO MGI:MGI:5429211 (MGI:MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:MGI:5429171 NCBI chr 1:64,100,159...64,114,437
Ensembl chr 1:64,101,018...64,113,792
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO
IEA
MGI:MGI:2158354 (MGI:MGI:3807442|PMID:18571096)
GO_REF:0000107
RGD
Ensembl
PMID:18571096 GO_REF:0000107, MGI:MGI:3807442 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase ISO MGI:MGI:3707001 (MGI:MGI:3770112|PMID:17276355) RGD PMID:17276355 MGI:MGI:3770112 NCBI chr 6:95,995,341...96,153,331
Ensembl chr 6:96,007,805...96,153,330
JBrowse link
G Nme5 NME/NM23 family member 5 ISO MGI:MGI:5429195 (MGI:MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:MGI:5429171 NCBI chr18:27,357,460...27,374,641
Ensembl chr18:27,357,413...27,374,603
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 ISO
ISS
(MGI:MGI:3757825|PMID:17826737)
GO_REF:0000024
RGD
UniProt
PMID:17826737 GO_REF:0000024, MGI:MGI:3757825 NCBI chr 2:177,836,191...178,057,378
Ensembl chr 2:177,836,202...178,057,157
JBrowse link
G Sema6d semaphorin 6D ISO (MGI:MGI:3037225|PMID:14977921) RGD PMID:14977921 MGI:MGI:3037225 NCBI chr 3:116,899,906...116,958,059
Ensembl chr 3:116,899,878...116,958,050
JBrowse link
G Slc7a11 solute carrier family 7 member 11 ISO MGI:MGI:1857061 (MGI:MGI:3664848|PMID:17035536) RGD PMID:17035536 MGI:MGI:3664848 NCBI chr 2:139,453,774...139,528,479
Ensembl chr 2:139,453,774...139,528,162
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B ISO MGI:MGI:2152544 (MGI:MGI:4367927|PMID:19732765) RGD PMID:19732765 MGI:MGI:4367927 NCBI chr 3:52,286,794...52,361,060
Ensembl chr 3:52,286,794...52,361,060
JBrowse link
G Ttn titin ISO MGI:MGI:3763610 (MGI:MGI:3760201|PMID:17360664) RGD PMID:17360664 MGI:MGI:3760201 NCBI chr 3:63,565,160...63,837,815 JBrowse link
G Ulk4 unc-51 like kinase 4 ISO MGI:MGI:5429194 (MGI:MGI:5429171|PMID:21746835) RGD PMID:21746835 MGI:MGI:5429171 NCBI chr 8:129,631,003...129,919,080
Ensembl chr 8:129,632,149...129,919,120
JBrowse link
fourth ventricle development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kdm2b lysine demethylase 2B ISO (MGI:MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Myh10 myosin heavy chain 10 IEA
ISO
GO_REF:0000107
MGI:MGI:2386445|MGI:MGI:3664764 (MGI:MGI:1933038|PMID:11283949), (MGI:MGI:3656460|PMID:16481398)
Ensembl
RGD
PMID:11283949, PMID:16481398 GO_REF:0000107, MGI:MGI:1933038, MGI:MGI:3656460 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732
JBrowse link
lateral ventricle development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 IEP
ISO
PMID:16133142
(PMID:16133142)
RGD PMID:16133142, PMID:16133142 RGD:8553876 NCBI chr 4:85,551,503...85,563,683
Ensembl chr 4:85,551,502...85,569,360
JBrowse link
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 IEA
ISO
GO_REF:0000107
(MGI:MGI:69165|PMID:7525597)
Ensembl
RGD
PMID:7525597 GO_REF:0000107, MGI:MGI:69165 NCBI chr10:56,205,622...56,211,879
Ensembl chr10:56,205,625...56,211,891
JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein ISO (MGI:MGI:3717553|PMID:17150371) RGD PMID:17150371 MGI:MGI:3717553 NCBI chr13:36,147,667...36,156,076
Ensembl chr13:36,117,119...36,174,908
JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 ISO MGI:MGI:2180081 (MGI:MGI:2178772|PMID:11912187) RGD PMID:11912187 MGI:MGI:2178772 NCBI chr 2:80,947,730...81,143,997
NCBI chr 2:81,159,060...81,337,560
Ensembl chr 2:80,948,658...81,143,447
JBrowse link
G Dpcd deleted in primary ciliary dyskinesia ISO (MGI:MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:MGI:4948830 NCBI chr 1:265,298,872...265,318,521
Ensembl chr 1:265,298,868...265,317,860
JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Myh10 myosin heavy chain 10 IEA
ISO
GO_REF:0000107
MGI:MGI:2386439|MGI:MGI:2386445 (MGI:MGI:1099556|PMID:9356462), (MGI:MGI:1354135|PMID:10712438), (MGI:MGI:1933038|PMID:11283949)
Ensembl
RGD
PMID:9356462, PMID:10712438, PMID:11283949 GO_REF:0000107, MGI:MGI:1099556, MGI:MGI:1354135, MGI:MGI:1933038 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732
JBrowse link
G Numb NUMB, endocytic adaptor protein IEA
ISO
GO_REF:0000107
(MGI:MGI:3763347|PMID:17174898)
Ensembl
RGD
PMID:17174898 GO_REF:0000107, MGI:MGI:3763347 NCBI chr 6:107,279,917...107,325,345
Ensembl chr 6:107,279,920...107,325,345
JBrowse link
G Numbl NUMB-like, endocytic adaptor protein IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3763347|PMID:17174898)
Ensembl
UniProt
RGD
PMID:17174898 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3763347 NCBI chr 1:84,067,841...84,091,659
Ensembl chr 1:84,067,938...84,091,671
JBrowse link
G Pax5 paired box 5 ISO MGI:MGI:2386577 (MGI:MGI:5476374|PMID:23349049) RGD PMID:23349049 MGI:MGI:5476374 NCBI chr 5:60,007,587...60,191,973
Ensembl chr 5:60,007,587...60,191,941
JBrowse link
G Rpgrip1l Rpgrip1-like ISO MGI:MGI:3716208 (MGI:MGI:3716248|PMID:17558409) RGD PMID:17558409 MGI:MGI:3716248 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan ISO
IEA
MGI:MGI:4867728 (MGI:MGI:4848234|PMID:21055390)
GO_REF:0000107
RGD
Ensembl
PMID:21055390 GO_REF:0000107, MGI:MGI:4848234 NCBI chr 1:163,317,281...163,328,697
Ensembl chr 1:163,317,282...163,328,591
JBrowse link
G Uchl5 ubiquitin C-terminal hydrolase L5 ISO (MGI:MGI:4849324|PMID:21048919) RGD PMID:21048919 MGI:MGI:4849324 NCBI chr13:60,568,102...60,603,812
Ensembl chr13:60,545,635...60,603,811
JBrowse link
third ventricle development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 IEA
ISO
GO_REF:0000107
(MGI:MGI:69165|PMID:7525597)
Ensembl
RGD
PMID:7525597 GO_REF:0000107, MGI:MGI:69165 NCBI chr10:56,205,622...56,211,879
Ensembl chr10:56,205,625...56,211,891
JBrowse link
G Dpcd deleted in primary ciliary dyskinesia ISO (MGI:MGI:4948830|PMID:20080492) RGD PMID:20080492 MGI:MGI:4948830 NCBI chr 1:265,298,872...265,318,521
Ensembl chr 1:265,298,868...265,317,860
JBrowse link
G Grcc10 gene rich cluster, C10 gene ISO (PMID:23453666) RGD PMID:23453666 NCBI chr 4:157,264,383...157,266,042
Ensembl chr 4:157,264,383...157,266,018
JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
G Myh10 myosin heavy chain 10 ISO
IEA
MGI:MGI:2386445 (MGI:MGI:1933038|PMID:11283949)
GO_REF:0000107
RGD
Ensembl
PMID:11283949 GO_REF:0000107, MGI:MGI:1933038 NCBI chr10:55,274,910...55,406,738
Ensembl chr10:55,275,411...55,406,732
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        system development 5272
          ventricular system development 34
            fourth ventricle development 2
            lateral ventricle development 13
            third ventricle development 5
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            nervous system development 2716
              central nervous system development 1257
                brain development 963
                  ventricular system development 34
                    fourth ventricle development 2
                    lateral ventricle development 13
                    third ventricle development 5
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.