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ONTOLOGY REPORT - ANNOTATIONS


Term:substantia nigra development
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Accession:GO:0021762 term browser browse the term
Definition:The progression of the substantia nigra over time from its initial formation until its mature state. The substantia nigra is the layer of gray substance that separates the posterior parts of the cerebral peduncles (tegmentum mesencephali) from the anterior parts; it normally includes a posterior compact part with many pigmented cells (pars compacta) and an anterior reticular part whose cells contain little pigment (pars reticularis).


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substantia nigra development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr12:13,715,843...13,718,813
Ensembl chr12:13,715,843...13,718,841
JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 2:208,566,385...208,577,147
Ensembl chr 2:208,566,385...208,577,146
JBrowse link
G Atp5pf ATP synthase peripheral stalk subunit F6 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr11:24,286,806...24,294,419
Ensembl chr11:24,286,787...24,294,179
JBrowse link
G Basp1 brain abundant, membrane attached signal protein 1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 2:77,586,424...77,632,626
Ensembl chr 2:77,586,424...77,632,628
JBrowse link
G Calm1 calmodulin 1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 6:124,217,241...124,225,292
Ensembl chr 6:124,217,241...124,225,292
JBrowse link
G Calm2 calmodulin 2 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 6:11,067,675...11,080,078
Ensembl chr15:65,506,874...65,507,968
JBrowse link
G Calm3 calmodulin 3 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 1:78,844,520...78,851,628
Ensembl chr 1:78,843,080...78,851,719
JBrowse link
G Ccdc14 coiled-coil domain containing 14 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr11:69,281,000...69,316,897
Ensembl chr11:69,281,554...69,316,848
JBrowse link
G Cdc42 cell division cycle 42 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 5:155,690,267...155,728,385
Ensembl chr 5:155,691,390...155,728,300
JBrowse link
G Ckb creatine kinase B ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 6:136,142,956...136,145,838
Ensembl chr 6:136,142,956...136,145,837
JBrowse link
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr10:88,490,798...88,497,357
Ensembl chr10:88,490,798...88,497,356
JBrowse link
G Cox6b1 cytochrome c oxidase subunit 6B1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 1:89,075,987...89,084,834
Ensembl chr 1:89,075,975...89,084,859
Ensembl chr 2:89,075,975...89,084,859
JBrowse link
G Dynll1 dynein light chain LC8-type 1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr12:47,074,200...47,076,573
Ensembl chr12:47,074,200...47,076,572
JBrowse link
G Eno3 enolase 3 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr10:57,278,271...57,283,661
Ensembl chr10:57,278,307...57,283,653
JBrowse link
G Fgf2 fibroblast growth factor 2 ISO MGI:MGI:1857458 (MGI:MGI:3696489|PMID:17234579) RGD PMID:17234579 MGI:MGI:3696489 NCBI chr 2:124,081,072...124,134,133
Ensembl chr 2:124,081,072...124,134,681
JBrowse link
G Fgf9 fibroblast growth factor 9 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 ISO MGI:MGI:1931521 (MGI:MGI:3696489|PMID:17234579) RGD PMID:17234579 MGI:MGI:3696489 NCBI chr14:82,272,322...82,287,739
Ensembl chr14:82,273,070...82,287,706
JBrowse link
G G6pd glucose-6-phosphate dehydrogenase ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr  X:156,274,800...156,293,935
Ensembl chr  X:156,274,800...156,293,926
JBrowse link
G Glud1 glutamate dehydrogenase 1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr16:10,661,486...10,695,557
Ensembl chr16:10,662,021...10,695,557
JBrowse link
G Gnb4 G protein subunit beta 4 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 2:118,978,965...119,007,877
Ensembl chr 2:118,978,973...119,007,835
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 3:13,838,304...13,842,763
Ensembl chr 3:13,838,304...13,842,762
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 1:266,782,835...266,794,389
Ensembl chr 1:266,781,617...266,794,431
JBrowse link
G Ldha lactate dehydrogenase A ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 1:102,900,288...102,909,713
Ensembl chr 1:102,900,286...102,909,707
JBrowse link
G Mag myelin-associated glycoprotein ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 1:89,345,325...89,360,905
Ensembl chr 1:89,345,429...89,360,733
JBrowse link
G Maob monoamine oxidase B ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr  X:6,430,694...6,533,520
Ensembl chr  X:6,430,594...6,533,534
JBrowse link
G Mapkap1 MAPK associated protein 1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 3:13,484,952...13,701,772
Ensembl chr 3:13,484,838...13,701,757
JBrowse link
G Mbp myelin basic protein ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr18:79,326,738...79,437,310
Ensembl chr18:79,326,738...79,437,310
JBrowse link
G Ndrg2 NDRG family member 2 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr15:28,305,820...28,314,459
Ensembl chr15:28,305,821...28,314,459
JBrowse link
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 3:79,721,686...79,728,863
Ensembl chr 3:79,721,694...79,728,879
JBrowse link
G Padi2 peptidyl arginine deiminase 2 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 5:159,428,479...159,471,113
Ensembl chr 5:159,428,515...159,471,144
JBrowse link
G Plp1 proteolipid protein 1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr  X:107,494,326...107,511,355
Ensembl chr  X:107,496,072...107,511,348
JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 2:60,461,513...60,469,646
Ensembl chr 2:60,461,551...60,469,685
JBrowse link
G Rhoa ras homolog family member A ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 8:117,082,440...117,116,244
Ensembl chr 8:117,106,576...117,116,167
JBrowse link
G S100a1 S100 calcium binding protein A1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 2:189,900,505...189,905,348
Ensembl chr 2:189,900,667...189,903,219
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 3:3,856,218...3,890,785
Ensembl chr 3:3,856,218...3,890,758
JBrowse link
G Sirt2 sirtuin 2 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 1:86,948,866...86,971,954
Ensembl chr 1:86,948,918...86,971,952
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr12:45,199,012...45,221,507
Ensembl chr12:45,199,577...45,221,512
JBrowse link
G Syngr3 synaptogyrin 3 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr10:14,051,413...14,056,169
Ensembl chr10:14,051,415...14,056,169
JBrowse link
G Sypl2 synaptophysin-like 2 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 2:211,003,046...211,017,778
Ensembl chr 2:211,003,046...211,017,778
JBrowse link
G Ttbk1 tau tubulin kinase 1 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 9:16,862,305...16,899,399
Ensembl chr 9:16,862,248...16,902,199
JBrowse link
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr10:63,884,338...63,921,709
Ensembl chr10:63,884,338...63,921,709
JBrowse link
G Ywhah tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr14:83,053,041...83,062,424
Ensembl chr14:83,053,041...83,062,424
JBrowse link
G Ywhaq tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr 6:43,463,294...43,493,816
Ensembl chr 6:43,463,294...43,493,816
JBrowse link
G Zfp148 zinc finger protein 148 ISO (PMID:22926577) UniProtKB PMID:22926577 NCBI chr11:70,509,909...70,618,422
Ensembl chr11:70,514,750...70,618,347
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        neural nucleus development 68
          substantia nigra development 44
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            nervous system development 2722
              central nervous system development 1262
                brain development 966
                  midbrain development 97
                    substantia nigra development 44
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.