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ONTOLOGY REPORT - ANNOTATIONS


Term:olfactory bulb development
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Accession:GO:0021772 term browser browse the term
Definition:The progression of the olfactory bulb over time from its initial formation until its mature state. The olfactory bulb coordinates neuronal signaling involved in the perception of smell. It receives input from the sensory neurons and outputs to the olfactory cortex.


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olfactory bulb development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 IMP (MGI:MGI:2159417|PMID:11884758) UniProtKB PMID:11884758 MGI:MGI:2159417 NCBI chr13:59,449,534...59,557,370
Ensembl chr13:59,445,742...59,585,227
JBrowse link
G Ak1 adenylate kinase 1 ISO RGD PMID:9920788 RGD:632499 NCBI chr 2:32,621,758...32,635,058
Ensembl chr 2:32,621,758...32,635,058
JBrowse link
G Ak3 adenylate kinase 3 ISO RGD PMID:9920788 RGD:632499 NCBI chr19:28,995,053...29,048,080
Ensembl chr19:29,020,833...29,047,961
JBrowse link
G Arx aristaless related homeobox IMP (MGI:MGI:3574008|PMID:15677725) MGI PMID:15677725 MGI:MGI:3574008 NCBI chr  X:93,286,507...93,298,357
Ensembl chr  X:93,286,445...93,298,357
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 IMP (MGI:MGI:3843558|PMID:19279158) MGI PMID:19279158 MGI:MGI:3843558 NCBI chr 4:8,690,402...8,868,449
Ensembl chr 4:8,690,406...8,867,659
JBrowse link
G Crtac1 cartilage acidic protein 1 IMP (MGI:MGI:5086019|PMID:21817055) MGI PMID:21817055 MGI:MGI:5086019 NCBI chr19:42,283,035...42,432,966
Ensembl chr19:42,268,287...42,431,785
JBrowse link
G Csf1r colony stimulating factor 1 receptor IMP (MGI:MGI:5430247|PMID:22542597) ParkinsonsUK-UCL PMID:22542597 MGI:MGI:5430247 NCBI chr18:61,105,572...61,131,139
Ensembl chr18:61,100,598...61,132,149
JBrowse link
G Dlx2 distal-less homeobox 2 IMP (MGI:MGI:76977|PMID:7590232) MGI PMID:7590232 MGI:MGI:76977 NCBI chr 2:71,543,408...71,546,754
Ensembl chr 2:71,543,408...71,546,754
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 ISO RGD PMID:14751288 RGD:2316247 NCBI chr14:66,802,864...66,911,041
Ensembl chr14:66,802,864...66,868,688
JBrowse link
G Efna2 ephrin A2 ISO RGD PMID:12234653 RGD:634733 NCBI chr10:80,179,482...80,190,010
Ensembl chr10:80,179,482...80,190,010
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ISO RGD PMID:18565716 RGD:13204724 NCBI chr10:24,637,914...24,712,159
Ensembl chr10:24,637,914...24,712,159
JBrowse link
G Eomes eomesodermin IMP (MGI:MGI:3846465|PMID:19435790) MGI PMID:19435790 MGI:MGI:3846465 NCBI chr 9:118,478,186...118,486,132
Ensembl chr 9:118,478,212...118,486,132
JBrowse link
G Ext1 exostosin glycosyltransferase 1 IMP (MGI:MGI:2679928|PMID:14605369) MGI PMID:14605369 MGI:MGI:2679928 NCBI chr15:53,068,261...53,346,183
Ensembl chr15:53,064,038...53,346,159
JBrowse link
G Fezf1 Fez family zinc finger 1 IMP (MGI:MGI:3702790|PMID:16971467) MGI PMID:16971467 MGI:MGI:3702790 NCBI chr 6:23,245,044...23,250,936
Ensembl chr 6:23,245,044...23,248,362
JBrowse link
G Fut1 fucosyltransferase 1 IMP (MGI:MGI:3701717|PMID:16884711) UniProt PMID:16884711 MGI:MGI:3701717 NCBI chr 7:45,617,606...45,621,059
Ensembl chr 7:45,617,289...45,621,059
JBrowse link
G Id2 inhibitor of DNA binding 2 IMP (MGI:MGI:3829299|PMID:19109490) MGI PMID:19109490 MGI:MGI:3829299 NCBI chr12:25,093,799...25,096,092
Ensembl chr12:25,093,799...25,097,140
JBrowse link
G Kif14 kinesin family member 14 IMP (MGI:MGI:5485315|PMID:23308235), (MGI:MGI:5605219|PMID:24931760) UniProtKB PMID:23308235, PMID:24931760 MGI:MGI:5485315, MGI:MGI:5605219 NCBI chr 1:136,466,301...136,555,938
Ensembl chr 1:136,466,343...136,531,511
JBrowse link
G Lhx2 LIM homeobox protein 2 IMP (MGI:MGI:4397621|PMID:19820705) MGI PMID:19820705 MGI:MGI:4397621 NCBI chr 2:38,339,271...38,369,737
Ensembl chr 2:38,339,281...38,369,733
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:91,672,791...91,816,124
Ensembl chr15:91,673,175...91,816,120
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chr  X:74,026,592...74,085,690
Ensembl chr  X:74,026,592...74,135,363
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 IMP (MGI:MGI:2151063|PMID:11997145)
(MGI:MGI:3527227|PMID:12527005)
MGI PMID:11997145, PMID:12527005 MGI:MGI:2151063, MGI:MGI:3527227 NCBI chr10:42,561,963...42,583,590
Ensembl chr10:42,561,963...42,583,632
JBrowse link
G Pax6 paired box 6 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Pcnt pericentrin (kendrin) IMP (MGI:MGI:4438783|PMID:20096683) MGI PMID:20096683 MGI:MGI:4438783 NCBI chr10:76,351,254...76,442,912
Ensembl chr10:76,351,263...76,442,786
JBrowse link
G Rpgrip1l Rpgrip1-like IMP (MGI:MGI:3716248|PMID:17558409) MGI PMID:17558409 MGI:MGI:3716248 NCBI chr 8:91,217,030...91,313,291
Ensembl chr 8:91,217,030...91,313,262
JBrowse link
G Sall1 spalt like transcription factor 1 IMP (MGI:MGI:4420747|PMID:18024993) MGI PMID:18024993 MGI:MGI:4420747 NCBI chr 8:89,027,242...89,044,162
Ensembl chr 8:89,027,235...89,044,162
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:13,124,822...13,603,485
Ensembl chr 5:13,125,414...13,602,565
JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) IMP (MGI:MGI:2176418|PMID:11731796) MGI PMID:11731796 MGI:MGI:2176418 NCBI chr 4:155,154,075...155,222,535
Ensembl chr 4:155,154,075...155,222,592
JBrowse link
G Slit1 slit guidance ligand 1 IGI (MGI:MGI:3626138|PMID:12097499) MGI PMID:12097499 MGI:MGI:3626138 NCBI chr19:41,597,824...41,747,275
Ensembl chr19:41,600,257...41,743,665
JBrowse link
G Slit2 slit guidance ligand 2 IGI (MGI:MGI:3626138|PMID:12097499) MGI PMID:12097499 MGI:MGI:3626138 NCBI chr 5:47,981,291...48,307,735
Ensembl chr 5:47,983,138...48,307,733
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 IMP (MGI:MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:MGI:5014119 NCBI chr12:98,920,537...98,983,250
Ensembl chr12:98,920,574...98,983,238
JBrowse link
chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit1 slit guidance ligand 1 NOT ISO (PMID:11748139) UniProtKB PMID:11748139 NCBI chr19:41,597,824...41,747,275
Ensembl chr19:41,600,257...41,743,665
JBrowse link
G Slit2 slit guidance ligand 2 NOT ISO (PMID:11748139) UniProtKB PMID:11748139 NCBI chr 5:47,981,291...48,307,735
Ensembl chr 5:47,983,138...48,307,733
JBrowse link
G Slit3 slit guidance ligand 3 NOT ISO (PMID:11748139) UniProtKB PMID:11748139 NCBI chr11:35,121,456...35,708,507
Ensembl chr11:35,121,224...35,708,507
JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr16:72,027,518...73,047,491
Ensembl chr16:72,308,306...73,046,095
JBrowse link
G Slit2 slit guidance ligand 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 5:47,981,291...48,307,735
Ensembl chr 5:47,983,138...48,307,733
JBrowse link
embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox IMP (MGI:MGI:3574008|PMID:15677725) MGI PMID:15677725 MGI:MGI:3574008 NCBI chr  X:93,286,507...93,298,357
Ensembl chr  X:93,286,445...93,298,357
JBrowse link
G Rac1 Rac family small GTPase 1 IMP (MGI:MGI:3709518|PMID:17409253) MGI PMID:17409253 MGI:MGI:3709518 NCBI chr 5:143,505,481...143,528,031
Ensembl chr 5:143,503,634...143,528,036
JBrowse link
motogenic signaling involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 8:25,518,759...25,575,718
Ensembl chr 8:25,513,654...25,575,718
JBrowse link
olfactory bulb interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 IMP (MGI:MGI:5461281|PMID:23090999) MGI PMID:23090999 MGI:MGI:5461281 NCBI chr 7:44,812,256...44,816,658
Ensembl chr 7:44,812,256...44,816,658
JBrowse link
G Robo1 roundabout guidance receptor 1 IGI (MGI:MGI:3702250|PMID:17360927) UniProtKB PMID:17360927 MGI:MGI:3702250 NCBI chr16:72,027,518...73,047,491
Ensembl chr16:72,308,306...73,046,095
JBrowse link
G Robo2 roundabout guidance receptor 2 IMP (MGI:MGI:3702250|PMID:17360927) UniProtKB PMID:17360927 MGI:MGI:3702250 NCBI chr16:73,891,976...75,447,443
Ensembl chr16:73,891,839...74,411,825
JBrowse link
G Sall3 spalt like transcription factor 3 IMP (MGI:MGI:3798379|PMID:18260139) MGI PMID:18260139 MGI:MGI:3798379 NCBI chr18:80,966,989...80,987,021
Ensembl chr18:80,966,376...80,986,771
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A IMP (MGI:MGI:5285122|PMID:21539518) UniProtKB PMID:21539518 MGI:MGI:5285122 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
olfactory bulb interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 IMP (MGI:MGI:5461281|PMID:23090999) MGI PMID:23090999 MGI:MGI:5461281 NCBI chr 7:44,812,256...44,816,658
Ensembl chr 7:44,812,256...44,816,658
JBrowse link
G Dicer1 dicer 1, ribonuclease type III IMP (MGI:MGI:3778596|PMID:18184563) MGI PMID:18184563 MGI:MGI:3778596 NCBI chr12:104,687,740...104,751,968
Ensembl chr12:104,687,742...104,751,952
JBrowse link
G Dlx5 distal-less homeobox 5 IMP (MGI:MGI:5774924|PMID:25937343) MGI PMID:25937343 MGI:MGI:5774924 NCBI chr 6:6,877,801...6,882,068
Ensembl chr 6:6,877,805...6,882,085
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 IMP (MGI:MGI:3527369|PMID:15543145) UniProtKB PMID:15543145 MGI:MGI:3527369 NCBI chr 1:68,031,884...69,108,576
Ensembl chr 1:68,032,186...69,108,059
JBrowse link
G Gsx2 GS homeobox 2 IMP (MGI:MGI:1926244|PMID:11060228) MGI PMID:11060228 MGI:MGI:1926244 NCBI chr 5:75,075,601...75,077,893
Ensembl chr 5:75,075,601...75,077,893
JBrowse link
G Mir141 microRNA 141 ISS (MGI:MGI:3778596|PMID:18184563) MGI PMID:18184563 MGI:MGI:3778596 NCBI chr 6:124,717,914...124,717,985
Ensembl chr 6:124,717,914...124,717,985
JBrowse link
G Mir200a microRNA 200a IDA
ISS
(MGI:MGI:5774924|PMID:25937343)
(MGI:MGI:3778596|PMID:18184563)
MGI PMID:18184563, PMID:25937343 MGI:MGI:3778596, MGI:MGI:5774924 NCBI chr 4:156,054,896...156,054,985
Ensembl chr 4:156,054,896...156,054,985
JBrowse link
G Mir200b microRNA 200b IDA
ISS
(MGI:MGI:5774924|PMID:25937343)
(MGI:MGI:3778596|PMID:18184563)
MGI PMID:18184563, PMID:25937343 MGI:MGI:3778596, MGI:MGI:5774924 NCBI chr 4:156,055,681...156,055,750
Ensembl chr 4:156,055,681...156,055,750
JBrowse link
G Mir200c microRNA 200c ISO
IDA
(MGI:MGI:3778596|PMID:18184563)
(MGI:MGI:5774924|PMID:25937343)
MGI PMID:18184563, PMID:25937343 MGI:MGI:3778596, MGI:MGI:5774924 NCBI chr 6:124,718,322...124,718,390
Ensembl chr 6:124,718,322...124,718,390
JBrowse link
G Mir376a microRNA 376a IDA (MGI:MGI:5774924|PMID:25937343) MGI PMID:25937343 MGI:MGI:5774924 NCBI chr12:109,723,781...109,723,848
Ensembl chr12:109,723,781...109,723,848
JBrowse link
G Mir429 microRNA 429 ISO (MGI:MGI:3778596|PMID:18184563) MGI PMID:18184563 MGI:MGI:3778596 NCBI chr 4:156,053,905...156,053,987
Ensembl chr 4:156,053,905...156,053,987
JBrowse link
G Mir9-1 microRNA 9-1 IDA (MGI:MGI:5774924|PMID:25937343) MGI PMID:25937343 MGI:MGI:5774924 NCBI chr 3:88,215,598...88,215,686
Ensembl chr 3:88,215,598...88,215,686
JBrowse link
G Mir9-2 microRNA 9-2 IDA (MGI:MGI:5774924|PMID:25937343) MGI PMID:25937343 MGI:MGI:5774924 NCBI chr13:83,738,814...83,738,885
Ensembl chr13:83,738,814...83,738,885
JBrowse link
G Mir9-3 microRNA 9-3 IDA (MGI:MGI:5774924|PMID:25937343) MGI PMID:25937343 MGI:MGI:5774924 NCBI chr 7:79,505,264...79,505,353
Ensembl chr 7:79,505,264...79,505,353
JBrowse link
G Sall1 spalt like transcription factor 1 IMP (MGI:MGI:4420747|PMID:18024993) UniProtKB PMID:18024993 MGI:MGI:4420747 NCBI chr 8:89,027,242...89,044,162
Ensembl chr 8:89,027,235...89,044,162
JBrowse link
G Uncx UNC homeobox IMP (MGI:MGI:4949589|PMID:20692344) MGI PMID:20692344 MGI:MGI:4949589 NCBI chr 5:139,543,865...139,548,179
Ensembl chr 5:139,543,494...139,548,179
JBrowse link
olfactory bulb mitral cell layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ogdh oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) IEP (PMID:16901643) UniProtKB PMID:16901643 NCBI chr11:6,291,597...6,359,094
Ensembl chr11:6,291,633...6,356,642
JBrowse link
G Pax6 paired box 6 ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Sall1 spalt like transcription factor 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 8:89,027,242...89,044,162
Ensembl chr 8:89,027,235...89,044,162
JBrowse link
tangential migration from the subventricular zone to the olfactory bulb term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr15:91,672,791...91,816,124
Ensembl chr15:91,673,175...91,816,120
JBrowse link
G Ogdh oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) IEP (PMID:16901643) UniProtKB PMID:16901643 NCBI chr11:6,291,597...6,359,094
Ensembl chr11:6,291,633...6,356,642
JBrowse link
G Slit1 slit guidance ligand 1 IMP (MGI:MGI:3042495|PMID:14960623) MGI PMID:14960623 MGI:MGI:3042495 NCBI chr19:41,597,824...41,747,275
Ensembl chr19:41,600,257...41,743,665
JBrowse link
G Srf serum response factor IMP (MGI:MGI:3578447|PMID:15837932) MGI PMID:15837932 MGI:MGI:3578447 NCBI chr17:46,546,838...46,558,267
Ensembl chr17:46,548,329...46,556,175
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    developmental process 7031
      anatomical structure development 6505
        olfactory bulb development 54
          olfactory bulb interneuron differentiation + 26
          olfactory bulb mitral cell layer development 3
          olfactory bulb tufted cell development 0
          tangential migration from the subventricular zone to the olfactory bulb + 10
Path 2
Term Annotations click to browse term
  biological_process 23386
    developmental process 7031
      anatomical structure development 6505
        multicellular organism development 5967
          system development 5379
            nervous system development 2723
              central nervous system development 1255
                brain development 967
                  forebrain development 515
                    telencephalon development 346
                      olfactory lobe development 57
                        olfactory bulb development 54
                          olfactory bulb interneuron differentiation + 26
                          olfactory bulb mitral cell layer development 3
                          olfactory bulb tufted cell development 0
                          tangential migration from the subventricular zone to the olfactory bulb + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.