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ONTOLOGY REPORT - ANNOTATIONS


Term:olfactory bulb development
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Accession:GO:0021772 term browser browse the term
Definition:The progression of the olfactory bulb over time from its initial formation until its mature state. The olfactory bulb coordinates neuronal signaling involved in the perception of smell. It receives input from the sensory neurons and outputs to the olfactory cortex.


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olfactory bulb development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding protein 1 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:5,510,009...5,614,416
Ensembl chr17:5,511,385...5,614,435
JBrowse link
G Ak1 adenylate kinase 1 IEP RGD PMID:9920788 RGD:632499 NCBI chr 3:11,652,143...11,659,135 JBrowse link
G Ak3 adenylate kinase 3 IEP RGD PMID:9920788 RGD:632499 NCBI chr 1:247,144,486...247,169,690
Ensembl chr 1:247,144,491...247,169,693
JBrowse link
G Arx aristaless related homeobox ISO MGI:MGI:2429693 (MGI:MGI:3574008|PMID:15677725) RGD PMID:15677725 MGI:MGI:3574008 NCBI chr  X:62,363,757...62,376,139
Ensembl chr  X:62,363,757...62,376,143
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:MGI:3707678 (MGI:MGI:3843558|PMID:19279158) RGD PMID:19279158 MGI:MGI:3843558 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696
JBrowse link
G Crtac1 cartilage acidic protein 1 ISO (MGI:MGI:5086019|PMID:21817055) RGD PMID:21817055 MGI:MGI:5086019 NCBI chr 1:261,527,009...261,669,614
Ensembl chr 1:261,514,141...261,669,586
JBrowse link
G Csf1r colony stimulating factor 1 receptor ISO
IEA
(MGI:MGI:5430247|PMID:22542597)
GO_REF:0000107
RGD
Ensembl
PMID:22542597 GO_REF:0000107, MGI:MGI:5430247 NCBI chr18:56,414,493...56,458,300
Ensembl chr18:56,414,488...56,458,300
JBrowse link
G Dlx2 distal-less homeobox 2 ISO
IEA
MGI:MGI:1857828 (MGI:MGI:76977|PMID:7590232)
GO_REF:0000107
RGD
Ensembl
PMID:7590232 GO_REF:0000107, MGI:MGI:76977 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
G Dpysl2 dihydropyrimidinase-like 2 IEP RGD PMID:14751288 RGD:2316247 NCBI chr15:43,475,640...43,581,725
Ensembl chr15:43,477,629...43,542,939
JBrowse link
G Efna2 ephrin A2 IEP RGD PMID:12234653 RGD:634733 NCBI chr 7:12,382,636...12,393,266
Ensembl chr 7:12,382,636...12,393,266
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 IEP RGD PMID:18565716 RGD:13204724 NCBI chr 1:21,748,201...21,813,205
Ensembl chr 1:21,748,261...21,813,371
JBrowse link
G Eomes eomesodermin ISO MGI:MGI:3774027 (MGI:MGI:3846465|PMID:19435790) RGD PMID:19435790 MGI:MGI:3846465 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Ext1 exostosin glycosyltransferase 1 ISO MGI:MGI:2176173|MGI:MGI:2682061 (MGI:MGI:2679928|PMID:14605369) RGD PMID:14605369 MGI:MGI:2679928 NCBI chr 7:92,605,008...92,881,392
Ensembl chr 7:92,605,728...92,882,068
JBrowse link
G Fezf1 Fez family zinc finger 1 ISO MGI:MGI:3626294 (MGI:MGI:3702790|PMID:16971467) RGD PMID:16971467 MGI:MGI:3702790 NCBI chr 4:50,309,281...50,312,608
Ensembl chr 4:50,309,281...50,312,608
JBrowse link
G Fut1 fucosyltransferase 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:3701717|PMID:16884711)
UniProt
RGD
PMID:16884711 GO_REF:0000024, MGI:MGI:3701717 NCBI chr 1:101,599,018...101,602,440
Ensembl chr 1:101,599,018...101,602,436
JBrowse link
G Id2 inhibitor of DNA binding 2 ISO MGI:MGI:3830733 (MGI:MGI:3829299|PMID:19109490) RGD PMID:19109490 MGI:MGI:3829299 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Kif14 kinesin family member 14 ISO (MGI:MGI:5485315|PMID:23308235), (MGI:MGI:5605219|PMID:24931760) RGD PMID:23308235, PMID:24931760 MGI:MGI:5485315, MGI:MGI:5605219 NCBI chr13:53,350,073...53,421,992
Ensembl chr13:53,351,717...53,420,111
JBrowse link
G Lhx2 LIM homeobox 2 ISO MGI:MGI:4399044 (MGI:MGI:4397621|PMID:19820705) RGD PMID:19820705 MGI:MGI:4397621 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:21168496) RGD PMID:21168496 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:12605461 RGD:12790706 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 ISO MGI:MGI:2151350|MGI:MGI:2176490 (MGI:MGI:2151063|PMID:11997145), (MGI:MGI:3527227|PMID:12527005) RGD PMID:11997145, PMID:12527005 MGI:MGI:2151063, MGI:MGI:3527227 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
G Pax6 paired box 6 IMP RGD PMID:14736749 RGD:8552333 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Pcnt pericentrin ISO MGI:MGI:3799303 (MGI:MGI:4438783|PMID:20096683) RGD PMID:20096683 MGI:MGI:4438783 NCBI chr20:12,943,523...13,038,615
Ensembl chr20:12,944,786...13,038,431
JBrowse link
G Rpgrip1l Rpgrip1-like ISO MGI:MGI:3716208 (MGI:MGI:3716248|PMID:17558409) RGD PMID:17558409 MGI:MGI:3716248 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO MGI:MGI:2388379 (MGI:MGI:4420747|PMID:18024993) RGD PMID:18024993 MGI:MGI:4420747 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Sema3a semaphorin 3A ISO
ISS
(PMID:22416012)
GO_REF:0000024
RGD
UniProt
PMID:22416012 GO_REF:0000024 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Ski SKI proto-oncogene ISO MGI:MGI:2177555 (MGI:MGI:2176418|PMID:11731796) RGD PMID:11731796 MGI:MGI:2176418 NCBI chr 5:172,556,196...172,623,878
Ensembl chr 5:172,559,135...172,623,899
JBrowse link
G Slit1 slit guidance ligand 1 ISO MGI:MGI:1315205 (MGI:MGI:3626138|PMID:12097499) RGD PMID:12097499 MGI:MGI:3626138 NCBI chr 1:260,843,481...260,992,366
Ensembl chr 1:260,843,483...260,992,366
JBrowse link
G Slit2 slit guidance ligand 2 ISO MGI:MGI:1315203 (MGI:MGI:3626138|PMID:12097499) RGD PMID:12097499 MGI:MGI:3626138 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO MGI:MGI:5140723 (MGI:MGI:5014119|PMID:21646512) RGD PMID:21646512 MGI:MGI:5014119 NCBI chr 6:122,920,308...122,974,525
Ensembl chr 6:122,920,317...122,974,522
JBrowse link
chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit1 slit guidance ligand 1 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr 1:260,843,481...260,992,366
Ensembl chr 1:260,843,483...260,992,366
JBrowse link
G Slit2 slit guidance ligand 2 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
G Slit3 slit guidance ligand 3 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr10:19,924,200...20,517,918
Ensembl chr10:20,320,878...20,518,518
JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 IEA
ISO
GO_REF:0000107
(PMID:15207848)
Ensembl
RGD
PMID:15207848 GO_REF:0000107 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Slit2 slit guidance ligand 2 IEA
ISO
GO_REF:0000107
(PMID:15207848)
Ensembl
RGD
PMID:15207848 GO_REF:0000107 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox ISO
IEA
MGI:MGI:2429693 (MGI:MGI:3574008|PMID:15677725)
GO_REF:0000107
RGD
Ensembl
PMID:15677725 GO_REF:0000107, MGI:MGI:3574008 NCBI chr  X:62,363,757...62,376,139
Ensembl chr  X:62,363,757...62,376,143
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:MGI:1932522|MGI:MGI:2663662 (MGI:MGI:3709518|PMID:17409253) RGD PMID:17409253 MGI:MGI:3709518 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
motogenic signaling involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:20083104 RGD:2325172 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
olfactory bulb interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 ISO
IEA
MGI:MGI:5467393 (MGI:MGI:5461281|PMID:23090999)
GO_REF:0000107
RGD
Ensembl
PMID:23090999 GO_REF:0000107, MGI:MGI:5461281 NCBI chr 1:100,807,821...100,812,410
Ensembl chr 1:100,808,241...100,810,522
JBrowse link
G Robo1 roundabout guidance receptor 1 ISO UniProtKB:Q7TPD3 (MGI:MGI:3702250|PMID:17360927) RGD PMID:17360927 MGI:MGI:3702250 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Robo2 roundabout guidance receptor 2 ISO (MGI:MGI:3702250|PMID:17360927) RGD PMID:17360927 MGI:MGI:3702250 NCBI chr11:11,062,866...12,618,793
Ensembl chr11:11,062,790...11,585,765
JBrowse link
G Sall3 spalt-like transcription factor 3 ISO MGI:MGI:3052730 (MGI:MGI:3798379|PMID:18260139) RGD PMID:18260139 MGI:MGI:3798379 NCBI chr18:77,572,200...77,591,710
Ensembl chr18:77,573,702...77,579,969
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
(MGI:MGI:5285122|PMID:21539518)
Ensembl
RGD
PMID:21539518 GO_REF:0000107, MGI:MGI:5285122 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
olfactory bulb interneuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 ISO MGI:MGI:5467393 (MGI:MGI:5461281|PMID:23090999) RGD PMID:23090999 MGI:MGI:5461281 NCBI chr 1:100,807,821...100,812,410
Ensembl chr 1:100,808,241...100,810,522
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (MGI:MGI:3778596|PMID:18184563) RGD PMID:18184563 MGI:MGI:3778596 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dlx5 distal-less homeobox 5 ISO
IEA
MGI:MGI:2180475 (MGI:MGI:5774924|PMID:25937343)
GO_REF:0000107
RGD
Ensembl
PMID:25937343 GO_REF:0000107, MGI:MGI:5774924 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3527369|PMID:15543145)
Ensembl
UniProt
RGD
PMID:15543145 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3527369 NCBI chr 9:75,021,790...76,178,936
Ensembl chr 9:75,021,790...75,528,644
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:MGI:2150162 (MGI:MGI:1926244|PMID:11060228) RGD PMID:11060228 MGI:MGI:1926244 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Mir200a microRNA 200a ISO (MGI:MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:MGI:5774924 NCBI chr 5:173,489,366...173,489,454 JBrowse link
G Mir200b microRNA 200b ISO (MGI:MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:MGI:5774924 NCBI chr 5:173,490,144...173,490,238
Ensembl chr 5:173,490,144...173,490,238
JBrowse link
G Mir200c microRNA 200c ISO (MGI:MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:MGI:5774924 NCBI chr 4:157,236,786...157,236,854 JBrowse link
G Mir9-3 microRNA 9-3 ISO (MGI:MGI:5774924|PMID:25937343) RGD PMID:25937343 MGI:MGI:5774924 NCBI chr 1:141,229,353...141,229,442 JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (MGI:MGI:4420747|PMID:18024993) RGD PMID:18024993 MGI:MGI:4420747 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
G Uncx UNC homeobox ISO
IEA
MGI:MGI:1928812 (MGI:MGI:4949589|PMID:20692344)
GO_REF:0000107
RGD
Ensembl
PMID:20692344 GO_REF:0000107, MGI:MGI:4949589 NCBI chr12:17,182,158...17,186,679
Ensembl chr12:17,182,163...17,186,679
JBrowse link
olfactory bulb mitral cell layer development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ogdh oxoglutarate dehydrogenase ISO (PMID:16901643) RGD PMID:16901643 NCBI chr14:86,414,924...86,481,903
Ensembl chr14:86,414,949...86,613,327
JBrowse link
G Pax6 paired box 6 IMP RGD PMID:14736749 RGD:8552333 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Sall1 spalt-like transcription factor 1 ISO (PMID:18024993) RGD PMID:18024993 NCBI chr19:23,387,737...23,405,025
Ensembl chr19:23,389,375...23,405,039
JBrowse link
tangential migration from the subventricular zone to the olfactory bulb term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 ISO (PMID:21168496) RGD PMID:21168496 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO (PMID:16901643) RGD PMID:16901643 NCBI chr14:86,414,924...86,481,903
Ensembl chr14:86,414,949...86,613,327
JBrowse link
G Slit1 slit guidance ligand 1 ISO
IEA
MGI:MGI:2179459 (MGI:MGI:3042495|PMID:14960623)
GO_REF:0000107
RGD
Ensembl
PMID:14960623 GO_REF:0000107, MGI:MGI:3042495 NCBI chr 1:260,843,481...260,992,366
Ensembl chr 1:260,843,483...260,992,366
JBrowse link
G Srf serum response factor ISO MGI:MGI:2181426|MGI:MGI:2385464 (MGI:MGI:3578447|PMID:15837932) RGD PMID:15837932 MGI:MGI:3578447 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure development 6269
        olfactory bulb development 49
          olfactory bulb interneuron differentiation + 21
          olfactory bulb mitral cell layer development 3
          olfactory bulb tufted cell development 0
          tangential migration from the subventricular zone to the olfactory bulb + 10
Path 2
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            nervous system development 2722
              central nervous system development 1262
                brain development 966
                  forebrain development 507
                    telencephalon development 338
                      olfactory lobe development 52
                        olfactory bulb development 49
                          olfactory bulb interneuron differentiation + 21
                          olfactory bulb mitral cell layer development 3
                          olfactory bulb tufted cell development 0
                          tangential migration from the subventricular zone to the olfactory bulb + 10
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.