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ONTOLOGY REPORT - ANNOTATIONS


Term:cerebral cortex radially oriented cell migration
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Accession:GO:0021799 term browser browse the term
Definition:The migration of cells in the developing cerebral cortex in which cells move from the ventricular and/or subventricular zone toward the surface of the brain.


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cerebral cortex radially oriented cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc141 coiled-coil domain containing 141 ISO (MGI:4868565|PMID:20956536) MGI PMID:20956536 MGI:4868565 NCBI chrNW_004955403:17,850,119...18,032,722 JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004955481:7,408,089...7,411,813
Ensembl chrNW_004955481:7,408,205...7,409,128
JBrowse link
G Cul5 cullin 5 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chrNW_004955412:10,266,072...10,336,156
Ensembl chrNW_004955412:10,256,381...10,336,156
JBrowse link
G Dab1 DAB adaptor protein 1 ISO (MGI:5545793|PMID:24210661)
(MGI:1098179|PMID:9338785)
RGD
MGI
PMID:9338785, PMID:18160654, PMID:24210661 MGI:1098179, MGI:5545793, RGD:2324689 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
G Disc1 DISC1 scaffold protein ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004955492:6,946,528...7,239,328
Ensembl chrNW_004955492:6,953,389...7,239,328
JBrowse link
G Dixdc1 DIX domain containing 1 ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004955412:13,640,693...13,713,926
Ensembl chrNW_004955412:13,642,078...13,711,850
JBrowse link
G Fbxo45 F-box protein 45 ISO (MGI:3849342|PMID:19398581) MGI PMID:19398581 MGI:3849342 NCBI chrNW_004955420:12,714,749...12,727,600
Ensembl chrNW_004955420:12,714,608...12,726,113
JBrowse link
G Fut10 fucosyltransferase 10 ISO (MGI:5532797|PMID:23986452) MGI PMID:23986452 MGI:5532797 NCBI chrNW_004955463:9,552,387...9,629,029
Ensembl chrNW_004955463:9,552,387...9,629,029
JBrowse link
G Lhx6 LIM homeobox 6 ISO (MGI:3702257|PMID:17376969) MGI PMID:17376969 MGI:3702257 NCBI chrNW_004955419:5,835,230...5,858,096
Ensembl chrNW_004955419:5,834,547...5,858,113
JBrowse link
G Mdga1 MAM domain containing glycosylphosphatidylinositol anchor 1 ISO (MGI:4866945|PMID:21104742) MGI PMID:21104742 MGI:4866945 NCBI chrNW_004955437:5,547,684...5,596,980
Ensembl chrNW_004955437:5,547,666...5,601,156
JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chrNW_004955467:8,432,806...8,486,563
Ensembl chrNW_004955467:8,432,806...8,468,155
JBrowse link
G Pou3f2 POU class 3 homeobox 2 ISO (MGI:2183078|PMID:12130536) MGI PMID:12130536 MGI:2183078 NCBI chrNW_004955411:24,714,899...24,722,048
Ensembl chrNW_004955411:24,715,088...24,716,695
JBrowse link
G Rac1 Rac family small GTPase 1 ISO (MGI:3709518|PMID:17409253) MGI PMID:17409253 MGI:3709518 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351
JBrowse link
G Rnf7 ring finger protein 7 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chrNW_004955508:4,001,441...4,003,518 JBrowse link
G Socs7 suppressor of cytokine signaling 7 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chrNW_004955451:13,567,377...13,595,685
Ensembl chrNW_004955451:13,567,377...13,595,685
JBrowse link
cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab2ip DAB2 interacting protein ISO (MGI:5463669|PMID:23056358) UniProt PMID:23056358 MGI:5463669 NCBI chrNW_004955419:6,229,437...6,416,619
Ensembl chrNW_004955419:6,228,591...6,416,402
JBrowse link
cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 ISO (MGI:3042322|PMID:15091337) MGI PMID:15091337 MGI:3042322 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 ISO (MGI:3796260|PMID:18509043) UniProt PMID:18509043 MGI:3796260 NCBI chrNW_004955433:15,253,196...15,288,982
Ensembl chrNW_004955433:15,259,720...15,289,151
JBrowse link
G Gli3 GLI family zinc finger 3 ISO (MGI:1097510|PMID:9232833) MGI PMID:9232833 MGI:1097510 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Rtn4 reticulon 4 ISO (MGI:4461842|PMID:20093372) UniProt PMID:20093372 MGI:4461842 NCBI chrNW_004955424:28,061,346...28,125,838 JBrowse link
cytosolic calcium signaling involved in initiation of cell movement in glial-mediated radial cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2ry12 purinergic receptor P2Y12 ISO PMID:18183622
PMID:17299767
ARUK-UCL PMID:17299767, PMID:18183622 RGD:13673751, RGD:13673786 NCBI chrNW_004955448:2,442,368...2,488,567
Ensembl chrNW_004955448:2,442,368...2,488,567
JBrowse link
extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 ISO (MGI:4366584|PMID:19737524) UniProt PMID:19737524 MGI:4366584 NCBI chrNW_004955406:41,801,235...42,050,731 JBrowse link
layer formation in cerebral cortex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 ISO (MGI:3796260|PMID:18509043) UniProt PMID:18509043 MGI:3796260 NCBI chrNW_004955433:15,253,196...15,288,982
Ensembl chrNW_004955433:15,259,720...15,289,151
JBrowse link
G Cdk5 cyclin dependent kinase 5 ISO (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chrNW_004955491:5,491,744...5,497,280
Ensembl chrNW_004955491:5,491,744...5,497,280
JBrowse link
G Cdk5r1 cyclin dependent kinase 5 regulatory subunit 1 ISO (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chrNW_004955481:7,408,089...7,411,813
Ensembl chrNW_004955481:7,408,205...7,409,128
JBrowse link
G Cdk5r2 cyclin dependent kinase 5 regulatory subunit 2 ISO (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chrNW_004955453:14,471,625...14,474,082
Ensembl chrNW_004955453:14,472,757...14,473,896
JBrowse link
G Ctnnb1 catenin beta 1 ISO (MGI:4454697|PMID:20503375) MGI PMID:20503375 MGI:4454697 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Dab2ip DAB2 interacting protein ISO (MGI:5463669|PMID:23056358) UniProt PMID:23056358 MGI:5463669 NCBI chrNW_004955419:6,229,437...6,416,619
Ensembl chrNW_004955419:6,228,591...6,416,402
JBrowse link
G Dcx doublecortin ISO (MGI:3844387|PMID:19342486) MGI PMID:19342486 MGI:3844387 NCBI chrNW_004955490:4,354,307...4,469,055
Ensembl chrNW_004955490:4,354,307...4,469,055
JBrowse link
G Gli3 GLI family zinc finger 3 ISO (MGI:4949945|PMID:21525285) MGI PMID:21525285 MGI:4949945 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Lrp8 LDL receptor related protein 8 ISO (MGI:3769085|PMID:17330141) MGI PMID:17330141 MGI:3769085 NCBI chrNW_004955464:5,837,002...5,912,178
Ensembl chrNW_004955464:5,837,009...5,911,672
JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 ISO (MGI:5507927|PMID:23097495) MGI PMID:23097495 MGI:5507927 NCBI chrNW_004955604:90,683...99,067
Ensembl chrNW_004955604:90,362...99,986
JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 ISO (MGI:3629819|PMID:15385616) MGI PMID:15385616 MGI:3629819 NCBI chrNW_004955411:33,303,765...33,325,221
Ensembl chrNW_004955411:33,303,655...33,325,376
JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO (MGI:3769085|PMID:17330141) MGI PMID:17330141 MGI:3769085 NCBI chrNW_004955481:608,897...686,454
Ensembl chrNW_004955481:608,897...686,452
JBrowse link
G Reln reelin ISO (MGI:5319303|PMID:20847152) MGI PMID:20847152 MGI:5319303 NCBI chrNW_004955410:8,424,439...8,863,966
Ensembl chrNW_004955410:8,424,394...8,863,969
JBrowse link
G Socs7 suppressor of cytokine signaling 7 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chrNW_004955451:13,567,377...13,595,685
Ensembl chrNW_004955451:13,567,377...13,595,685
JBrowse link
negative regulation of cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmerb1 bMERB domain containing 1 ISO (MGI:5578117|PMID:25099998) MGI PMID:25099998 MGI:5578117 NCBI chrNW_004955442:317,334...442,514
Ensembl chrNW_004955442:314,486...442,088
JBrowse link
neuronal-glial interaction involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lamb1 laminin subunit beta 1 ISO (PMID:23472759) UniProtKB PMID:23472759 NCBI chrNW_004955410:12,241,235...12,305,433
Ensembl chrNW_004955410:12,241,235...12,305,433
JBrowse link
nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sun1 Sad1 and UNC84 domain containing 1 ISO (MGI:4412315|PMID:19874786) UniProt PMID:19874786 MGI:4412315 NCBI chrNW_004955460:8,560,824...8,619,142
Ensembl chrNW_004955460:8,579,460...8,617,705
JBrowse link
G Sun2 Sad1 and UNC84 domain containing 2 ISO (MGI:4412315|PMID:19874786) UniProt PMID:19874786 MGI:4412315 NCBI chrNW_004955413:24,851,626...24,868,352
Ensembl chrNW_004955413:24,851,626...24,865,575
JBrowse link
G Syne2 spectrin repeat containing nuclear envelope protein 2 ISO (MGI:4412315|PMID:19874786) UniProt PMID:19874786 MGI:4412315 NCBI chrNW_004955466:5,646,516...5,926,382 JBrowse link
pyramidal neuron migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Disc1 DISC1 scaffold protein ISO RGD PMID:16299498 RGD:5509783 NCBI chrNW_004955492:6,946,528...7,239,328
Ensembl chrNW_004955492:6,953,389...7,239,328
JBrowse link
G Foxg1 forkhead box G1 ISO (MGI:5440366|PMID:22726835) MGI PMID:22726835 MGI:5440366 NCBI chrNW_004955409:31,672,960...31,674,970 JBrowse link
G Zmiz1 zinc finger MIZ-type containing 1 ISO (PMID:30639322) UniProt PMID:30639322 NCBI chrNW_004955437:13,338,077...13,534,283
Ensembl chrNW_004955437:13,337,825...13,494,889
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    developmental process 5616
      anatomical structure development 5254
        cerebral cortex development 147
          cerebral cortex cell migration 52
            cerebral cortex radially oriented cell migration 37
              cerebral cortex radial glia guided migration + 26
              somal translocation + 0
Path 2
Term Annotations click to browse term
  biological_process 11892
    developmental process 5616
      anatomical structure development 5254
        multicellular organism development 4812
          system development 4532
            nervous system development 2347
              central nervous system development 1136
                brain development 898
                  forebrain development 486
                    telencephalon development 325
                      pallium development 225
                        cerebral cortex development 147
                          cerebral cortex cell migration 52
                            cerebral cortex radially oriented cell migration 37
                              cerebral cortex radial glia guided migration + 26
                              somal translocation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.