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ONTOLOGY REPORT - ANNOTATIONS


Term:cerebral cortex radially oriented cell migration
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Accession:GO:0021799 term browser browse the term
Definition:The migration of cells in the developing cerebral cortex in which cells move from the ventricular and/or subventricular zone toward the surface of the brain.


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cerebral cortex radially oriented cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC141 coiled-coil domain containing 141 ISO (MGI:4868565|PMID:20956536) MGI PMID:20956536 MGI:4868565 NCBI chr36:22,437,363...22,626,200
Ensembl chr36:22,492,052...22,625,957
JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chr 9:40,481,111...40,502,689
Ensembl chr 9:40,501,646...40,502,569
JBrowse link
G CUL5 cullin 5 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chr 5:24,393,692...24,477,595
Ensembl chr 5:24,396,823...24,488,043
JBrowse link
G DAB1 DAB adaptor protein 1 ISO (MGI:1098179|PMID:9338785)
(MGI:5545793|PMID:24210661)
RGD
MGI
PMID:9338785, PMID:18160654, PMID:24210661 MGI:1098179, MGI:5545793, RGD:2324689 NCBI chr 5:51,397,837...52,505,513
Ensembl chr 5:52,231,141...52,502,336
JBrowse link
G DISC1 DISC1 scaffold protein IEA Ensembl GO_REF:0000107 NCBI chr 4:7,524,336...7,825,143
Ensembl chr 4:7,524,397...7,822,558
JBrowse link
G DIXDC1 DIX domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:21,097,000...21,168,470
Ensembl chr 5:21,100,045...21,167,166
JBrowse link
G FBXO45 F-box protein 45 ISO (MGI:3849342|PMID:19398581) MGI PMID:19398581 MGI:3849342 NCBI chr33:29,627,762...29,642,175
Ensembl chr33:29,635,831...29,639,189
JBrowse link
G FUT10 fucosyltransferase 10 IEA Ensembl GO_REF:0000107 NCBI chr16:31,186,333...31,265,463
Ensembl chr16:31,186,418...31,264,963
JBrowse link
G LHX6 LIM homeobox 6 ISO (MGI:3702257|PMID:17376969) MGI PMID:17376969 MGI:3702257 NCBI chr 9:60,348,529...60,374,037
Ensembl chr 9:60,348,335...60,374,024
JBrowse link
G MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 ISO (MGI:4866945|PMID:21104742) MGI PMID:21104742 MGI:4866945 NCBI chr12:6,655,586...6,716,619
Ensembl chr12:6,659,910...6,686,760
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:33,187,614...33,244,483
Ensembl chr 5:33,204,452...33,266,052
JBrowse link
G POU3F2 POU class 3 homeobox 2 ISO (MGI:2183078|PMID:12130536) MGI PMID:12130536 MGI:2183078 NCBI chr12:57,103,712...57,108,522 JBrowse link
G POU3F3 POU class 3 homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr10:38,513,872...38,517,692
Ensembl chr10:38,513,013...38,514,684
JBrowse link
G RAC1 Rac family small GTPase 1 ISO (MGI:3709518|PMID:17409253) MGI PMID:17409253 MGI:3709518 NCBI chr 6:11,726,259...11,758,532
Ensembl chr 6:11,655,494...11,757,216
JBrowse link
G RNF7 ring finger protein 7 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chr23:37,578,222...37,584,862
Ensembl chr23:37,578,273...37,584,523
JBrowse link
G SOCS7 suppressor of cytokine signaling 7 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chr 9:23,775,349...23,809,325
Ensembl chr 9:23,776,827...23,803,994
JBrowse link
cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAB2IP DAB2 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 9:60,725,887...60,918,242
Ensembl chr 9:60,726,809...60,918,139
JBrowse link
cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAB1 DAB adaptor protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 5:51,397,837...52,505,513
Ensembl chr 5:52,231,141...52,502,336
JBrowse link
cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRG1 adhesion G protein-coupled receptor G1 ISO (MGI:3796260|PMID:18509043) UniProt PMID:18509043 MGI:3796260 NCBI chr 2:58,805,737...58,842,618
Ensembl chr 2:58,805,834...58,852,684
JBrowse link
G GLI3 GLI family zinc finger 3 ISO (MGI:1097510|PMID:9232833) MGI PMID:9232833 MGI:1097510 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G RTN4 reticulon 4 IEA Ensembl GO_REF:0000107 NCBI chr10:55,884,452...55,954,476
Ensembl chr10:55,885,125...55,936,574
JBrowse link
cytosolic calcium signaling involved in initiation of cell movement in glial-mediated radial cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2RY12 purinergic receptor P2Y12 ISO PMID:17299767
PMID:18183622
ARUK-UCL PMID:17299767, PMID:18183622 RGD:13673751, RGD:13673786 NCBI chr23:45,908,574...45,954,675
Ensembl chr23:45,909,485...45,910,526
JBrowse link
extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 IEA Ensembl GO_REF:0000107 NCBI chr38:2,506,617...2,741,866 JBrowse link
layer formation in cerebral cortex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRG1 adhesion G protein-coupled receptor G1 IEA Ensembl GO_REF:0000107 NCBI chr 2:58,805,737...58,842,618
Ensembl chr 2:58,805,834...58,852,684
JBrowse link
G CDK5 cyclin dependent kinase 5 ISO (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chr16:15,105,177...15,113,085
Ensembl chr16:15,101,230...15,109,269
JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:40,481,111...40,502,689
Ensembl chr 9:40,501,646...40,502,569
JBrowse link
G CDK5R2 cyclin dependent kinase 5 regulatory subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr37:25,528,934...25,535,795
Ensembl chr37:25,529,151...25,530,263
JBrowse link
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DAB2IP DAB2 interacting protein IEA Ensembl GO_REF:0000107 NCBI chr 9:60,725,887...60,918,242
Ensembl chr 9:60,726,809...60,918,139
JBrowse link
G DCX doublecortin IEA Ensembl GO_REF:0000107 NCBI chr  X:84,408,762...84,541,157
Ensembl chr  X:84,408,895...84,517,827
JBrowse link
G GLI3 GLI family zinc finger 3 IEA Ensembl GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G LRP8 LDL receptor related protein 8 ISO (MGI:3769085|PMID:17330141) MGI PMID:17330141 MGI:3769085 NCBI chr 5:55,604,878...55,684,666
Ensembl chr 5:55,604,878...55,699,736
JBrowse link
G MBOAT7 membrane bound O-acyltransferase domain containing 7 IEA Ensembl GO_REF:0000107 NCBI chr 1:103,028,000...103,040,299
Ensembl chr 1:103,028,002...103,040,167
JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 IEA Ensembl GO_REF:0000107 NCBI chr12:65,209,177...65,230,274
Ensembl chr12:65,209,542...65,228,998
JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400
JBrowse link
G RELN reelin IEA Ensembl GO_REF:0000107 NCBI chr18:16,275,822...16,773,875
Ensembl chr18:16,275,837...16,773,875
JBrowse link
G SOCS7 suppressor of cytokine signaling 7 IEA Ensembl GO_REF:0000107 NCBI chr 9:23,775,349...23,809,325
Ensembl chr 9:23,776,827...23,803,994
JBrowse link
negative regulation of cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMERB1 bMERB domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:28,242,190...28,356,218
Ensembl chr 6:28,225,677...28,357,180
JBrowse link
neuronal-glial interaction involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 IEA Ensembl GO_REF:0000107 NCBI chr18:12,634,640...12,700,311
Ensembl chr18:12,630,554...12,700,308
JBrowse link
nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUN1 Sad1 and UNC84 domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:15,996,061...16,047,788
Ensembl chr 6:15,997,488...16,047,687
JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr10:26,055,508...26,074,972
Ensembl chr10:26,055,536...26,074,434
JBrowse link
G SYNE2 spectrin repeat containing nuclear envelope protein 2 IEA Ensembl GO_REF:0000107 NCBI chr 8:38,373,900...38,643,544
Ensembl chr 8:38,373,964...38,643,240
JBrowse link
pyramidal neuron migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DISC1 DISC1 scaffold protein ISO RGD PMID:16299498 RGD:5509783 NCBI chr 4:7,524,336...7,825,143
Ensembl chr 4:7,524,397...7,822,558
JBrowse link
G FOXG1 forkhead box G1 ISO (MGI:5440366|PMID:22726835) MGI PMID:22726835 MGI:5440366 NCBI chr 8:8,276,300...8,279,785 JBrowse link
G ZMIZ1 zinc finger MIZ-type containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 4:28,807,368...29,035,946
Ensembl chr 4:28,854,908...29,045,986
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16190
    developmental process 6310
      anatomical structure development 5858
        cerebral cortex development 147
          cerebral cortex cell migration 53
            cerebral cortex radially oriented cell migration 38
              cerebral cortex radial glia guided migration + 26
              somal translocation + 0
Path 2
Term Annotations click to browse term
  biological_process 16190
    developmental process 6310
      anatomical structure development 5858
        multicellular organism development 5351
          system development 4984
            nervous system development 2586
              central nervous system development 1213
                brain development 934
                  forebrain development 498
                    telencephalon development 330
                      pallium development 226
                        cerebral cortex development 147
                          cerebral cortex cell migration 53
                            cerebral cortex radially oriented cell migration 38
                              cerebral cortex radial glia guided migration + 26
                              somal translocation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.