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ONTOLOGY REPORT - ANNOTATIONS


Term:cerebral cortex radially oriented cell migration
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Accession:GO:0021799 term browser browse the term
Definition:The migration of cells in the developing cerebral cortex in which cells move from the ventricular and/or subventricular zone toward the surface of the brain.


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cerebral cortex radially oriented cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC141 coiled-coil domain containing 141 ISO (MGI:4868565|PMID:20956536) MGI PMID:20956536 MGI:4868565 NCBI chr 2:178,825,308...179,050,137
Ensembl chr 2:178,829,757...179,050,086
JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chr17:32,485,028...32,491,256
Ensembl chr17:32,486,993...32,491,253
JBrowse link
G CUL5 cullin 5 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chr11:108,008,733...108,107,766
Ensembl chr11:108,008,898...108,107,761
JBrowse link
G DAB1 DAB adaptor protein 1 ISO (MGI:5545793|PMID:24210661)
(MGI:1098179|PMID:9338785)
RGD
MGI
PMID:9338785, PMID:18160654, PMID:24210661 MGI:1098179, MGI:5545793, RGD:2324689 NCBI chr 1:56,994,778...58,546,726
Ensembl chr 1:56,994,778...58,546,734
JBrowse link
G DISC1 DISC1 scaffold protein ISO (MGI:4821185|PMID:20624590) DFLAT PMID:20624590 MGI:4821185 NCBI chr 1:231,626,790...232,041,272
Ensembl chr 1:231,626,815...232,041,272
Ensembl chr 1:231,626,815...232,041,272
JBrowse link
G DIXDC1 DIX domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr11:111,927,169...112,022,653
Ensembl chr11:111,927,144...112,022,653
JBrowse link
G FBXO45 F-box protein 45 IEA Ensembl GO_REF:0000107 NCBI chr 3:196,568,660...196,589,059
Ensembl chr 3:196,568,611...196,589,059
JBrowse link
G FUT10 fucosyltransferase 10 IEA Ensembl GO_REF:0000107 NCBI chr 8:33,308,102...33,473,146
Ensembl chr 8:33,370,824...33,473,146
JBrowse link
G LHX6 LIM homeobox 6 ISS UniProtKB GO_REF:0000024 NCBI chr 9:122,185,626...122,228,957
Ensembl chr 9:122,202,577...122,229,626
JBrowse link
G MDGA1 MAM domain containing glycosylphosphatidylinositol anchor 1 ISO (MGI:4866945|PMID:21104742) MGI PMID:21104742 MGI:4866945 NCBI chr 6:37,630,679...37,697,883
Ensembl chr 6:37,630,679...37,699,306
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 IEA Ensembl GO_REF:0000107 NCBI chr17:8,435,884...8,472,744
Ensembl chr17:8,413,131...8,490,411
JBrowse link
G POU3F2 POU class 3 homeobox 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:98,834,574...98,839,458
Ensembl chr 6:98,834,574...98,839,458
JBrowse link
G POU3F3 POU class 3 homeobox 3 IEA Ensembl GO_REF:0000107 NCBI chr 2:104,854,115...104,858,574
Ensembl chr 2:104,853,287...104,858,574
Ensembl chr 2:104,853,287...104,858,574
JBrowse link
G RAC1 Rac family small GTPase 1 ISO (MGI:3709518|PMID:17409253) MGI PMID:17409253 MGI:3709518 NCBI chr 7:6,374,527...6,403,967
Ensembl chr 7:6,374,527...6,403,967
JBrowse link
G RNF7 ring finger protein 7 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chr 3:141,738,298...141,747,560
Ensembl chr 3:141,738,249...141,747,560
JBrowse link
G SOCS7 suppressor of cytokine signaling 7 ISO (MGI:5545793|PMID:24210661) MGI PMID:24210661 MGI:5545793 NCBI chr17:38,351,844...38,405,593
Ensembl chr17:38,351,844...38,405,593
JBrowse link
cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAB2IP DAB2 interacting protein ISS UniProtKB GO_REF:0000024 NCBI chr 9:121,566,883...121,785,530
Ensembl chr 9:121,567,057...121,785,530
JBrowse link
cell-cell adhesion involved in neuronal-glial interactions involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAB1 DAB adaptor protein 1 IEA Ensembl GO_REF:0000107 NCBI chr 1:56,994,778...58,546,726
Ensembl chr 1:56,994,778...58,546,734
JBrowse link
cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRG1 adhesion G protein-coupled receptor G1 ISS UniProtKB GO_REF:0000024 NCBI chr16:57,619,535...57,665,567
Ensembl chr16:57,610,652...57,665,580
JBrowse link
G GLI3 GLI family zinc finger 3 ISO (MGI:1097510|PMID:9232833) MGI PMID:9232833 MGI:1097510 NCBI chr 7:41,960,949...42,237,209
Ensembl chr 7:41,960,949...42,237,870
JBrowse link
G RTN4 reticulon 4 ISS UniProtKB GO_REF:0000024 NCBI chr 2:54,972,189...55,137,831
Ensembl chr 2:54,972,187...55,112,621
JBrowse link
cytosolic calcium signaling involved in initiation of cell movement in glial-mediated radial cell migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2RY12 purinergic receptor P2Y12 ISS ARUK-UCL GO_REF:0000024 NCBI chr 3:151,336,843...151,384,753
Ensembl chr 3:151,337,380...151,384,812
Ensembl chr 3:151,337,380...151,384,812
JBrowse link
extension of a leading process involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SRGAP2 SLIT-ROBO Rho GTPase activating protein 2 ISS UniProtKB GO_REF:0000024 NCBI chr 1:206,203,541...206,464,436
Ensembl chr 1:206,203,345...206,464,443
JBrowse link
G SRGAP2C SLIT-ROBO Rho GTPase activating protein 2C IDA (PMID:22559944) UniProtKB PMID:22559944 NCBI chr 1:121,184,975...121,392,874
Ensembl chr 1:121,184,811...121,392,874
JBrowse link
layer formation in cerebral cortex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRG1 adhesion G protein-coupled receptor G1 ISS UniProtKB GO_REF:0000024 NCBI chr16:57,619,535...57,665,567
Ensembl chr16:57,610,652...57,665,580
JBrowse link
G CDK5 cyclin dependent kinase 5 IEA Ensembl GO_REF:0000107 NCBI chr 7:151,053,815...151,057,897
Ensembl chr 7:151,053,815...151,057,897
JBrowse link
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 IEA Ensembl GO_REF:0000107 NCBI chr17:32,485,028...32,491,256
Ensembl chr17:32,486,993...32,491,253
JBrowse link
G CDK5R2 cyclin dependent kinase 5 regulatory subunit 2 IEA Ensembl GO_REF:0000107 NCBI chr 2:218,959,666...218,962,155
Ensembl chr 2:218,959,666...218,962,155
JBrowse link
G CTNNB1 catenin beta 1 IEA Ensembl GO_REF:0000107 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G DAB2IP DAB2 interacting protein ISS UniProtKB GO_REF:0000024 NCBI chr 9:121,566,883...121,785,530
Ensembl chr 9:121,567,057...121,785,530
JBrowse link
G DCX doublecortin IEA Ensembl GO_REF:0000107 NCBI chr  X:111,293,779...111,412,205
Ensembl chr  X:111,293,779...111,412,429
JBrowse link
G GLI3 GLI family zinc finger 3 IEA Ensembl GO_REF:0000107 NCBI chr 7:41,960,949...42,237,209
Ensembl chr 7:41,960,949...42,237,870
JBrowse link
G LRP8 LDL receptor related protein 8 ISO (MGI:3769085|PMID:17330141) MGI PMID:17330141 MGI:3769085 NCBI chr 1:53,242,364...53,328,070
Ensembl chr 1:53,242,364...53,328,469
JBrowse link
G MBOAT7 membrane bound O-acyltransferase domain containing 7 ISS UniProtKB GO_REF:0000024 NCBI chr19:54,173,414...54,189,632
Ensembl chr19:54,173,412...54,189,882
JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 IEA Ensembl GO_REF:0000107 NCBI chr 6:108,166,022...108,188,809
Ensembl chr 6:108,166,058...108,188,809
Ensembl chr 6:108,166,058...108,188,809
JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISS BHF-UCL GO_REF:0000024 NCBI chr17:2,593,210...2,685,617
Ensembl chr17:2,593,210...2,685,615
JBrowse link
G RELN reelin IEA Ensembl GO_REF:0000107 NCBI chr 7:103,471,789...103,989,658
Ensembl chr 7:103,471,784...103,989,658
JBrowse link
G SOCS7 suppressor of cytokine signaling 7 IEA Ensembl GO_REF:0000107 NCBI chr17:38,351,844...38,405,593
Ensembl chr17:38,351,844...38,405,593
JBrowse link
negative regulation of cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMERB1 bMERB domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr16:15,434,588...15,588,259
Ensembl chr16:15,434,475...15,625,028
JBrowse link
neuronal-glial interaction involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LAMB1 laminin subunit beta 1 IMP (PMID:23472759) UniProtKB PMID:23472759 NCBI chr 7:107,923,799...108,003,176
Ensembl chr 7:107,923,799...108,003,187
JBrowse link
nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SUN1 Sad1 and UNC84 domain containing 1 IEA Ensembl GO_REF:0000107 NCBI chr 7:815,557...874,934
Ensembl chr 7:816,615...896,435
JBrowse link
G SUN2 Sad1 and UNC84 domain containing 2 IEA Ensembl GO_REF:0000107 NCBI chr22:38,734,727...38,756,014
Ensembl chr22:38,734,725...38,794,143
JBrowse link
G SYNE2 spectrin repeat containing nuclear envelope protein 2 IEA Ensembl GO_REF:0000107 NCBI chr14:63,761,904...64,226,449
Ensembl chr14:63,761,899...64,226,433
Ensembl chr14:63,761,899...64,226,433
JBrowse link
pyramidal neuron migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DISC1 DISC1 scaffold protein IEA Ensembl GO_REF:0000107 NCBI chr 1:231,626,790...232,041,272
Ensembl chr 1:231,626,815...232,041,272
Ensembl chr 1:231,626,815...232,041,272
JBrowse link
G FOXG1 forkhead box G1 IEA Ensembl GO_REF:0000107 NCBI chr14:28,766,787...28,770,277
Ensembl chr14:28,766,787...28,770,277
Ensembl chr14:28,766,787...28,770,277
JBrowse link
G ZMIZ1 zinc finger MIZ-type containing 1 IMP (PMID:30639322) UniProt PMID:30639322 NCBI chr10:79,068,966...79,316,519
Ensembl chr10:79,068,966...79,316,528
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      anatomical structure development 6873
        cerebral cortex development 155
          cerebral cortex cell migration 54
            cerebral cortex radially oriented cell migration 39
              cerebral cortex radial glia guided migration + 27
              somal translocation + 0
Path 2
Term Annotations click to browse term
  biological_process 18672
    developmental process 7466
      anatomical structure development 6873
        multicellular organism development 6346
          system development 5749
            nervous system development 2886
              central nervous system development 1320
                brain development 1000
                  forebrain development 514
                    telencephalon development 345
                      pallium development 236
                        cerebral cortex development 155
                          cerebral cortex cell migration 54
                            cerebral cortex radially oriented cell migration 39
                              cerebral cortex radial glia guided migration + 27
                              somal translocation + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.