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ONTOLOGY REPORT - ANNOTATIONS


Term:layer formation in cerebral cortex
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Accession:GO:0021819 term browser browse the term
Definition:The detachment of cells from radial glial fibers at the appropriate time when they cease to migrate and form distinct layer in the cerebral cortex.
Synonyms:related_synonym: cerebral cortex lamination


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layer formation in cerebral cortex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:3796260|PMID:18509043)
Ensembl
UniProt
RGD
PMID:18509043 GO_REF:0000024, GO_REF:0000107, MGI:MGI:3796260 NCBI chr19:10,423,534...10,460,674
Ensembl chr19:10,423,501...10,460,674
JBrowse link
G Cdk5 cyclin-dependent kinase 5 ISO MGI:MGI:1861809 (MGI:MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:MGI:2149271 NCBI chr 4:7,282,945...7,287,427
Ensembl chr 4:7,282,948...7,288,383
JBrowse link
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 ISO MGI:MGI:1330828 (MGI:MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:MGI:2149271 NCBI chr10:67,862,054...67,863,255
Ensembl chr10:67,862,054...67,863,255
JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 ISO MGI:MGI:101764 (MGI:MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:MGI:2149271 NCBI chr 9:82,120,059...82,121,527
Ensembl chr 9:82,120,059...82,121,527
JBrowse link
G Ctnnb1 catenin beta 1 ISO
IEA
MGI:MGI:2148567|MGI:MGI:3701617 (MGI:MGI:4454697|PMID:20503375)
GO_REF:0000107
RGD
Ensembl
PMID:20503375 GO_REF:0000107, MGI:MGI:4454697 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Dab2ip DAB2 interacting protein IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:MGI:5463669|PMID:23056358)
Ensembl
UniProt
RGD
PMID:23056358 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5463669 NCBI chr 3:14,889,263...15,060,286
Ensembl chr 3:14,889,510...15,060,286
JBrowse link
G Dcx doublecortin ISO
IEA
MGI:MGI:2387757 (MGI:MGI:3844387|PMID:19342486)
GO_REF:0000107
RGD
Ensembl
PMID:19342486 GO_REF:0000107, MGI:MGI:3844387 NCBI chr  X:115,098,675...115,175,515
Ensembl chr  X:115,098,675...115,175,299
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:MGI:2176173|MGI:MGI:3798847 (MGI:MGI:4949945|PMID:21525285) RGD PMID:21525285 MGI:MGI:4949945 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Lrp8 LDL receptor related protein 8 ISO MGI:MGI:109520 (MGI:MGI:3769085|PMID:17330141) RGD PMID:17330141 MGI:MGI:3769085 NCBI chr 5:127,404,348...127,476,636
Ensembl chr 5:127,404,450...127,476,641
JBrowse link
G Mboat7 membrane bound O-acyltransferase domain containing 7 ISO MGI:MGI:5509338 (MGI:MGI:5507927|PMID:23097495) RGD PMID:23097495 MGI:MGI:5507927 NCBI chr 1:64,100,159...64,114,437
Ensembl chr 1:64,101,018...64,113,792
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 ISO MGI:MGI:2151350 (MGI:MGI:3629819|PMID:15385616) RGD PMID:15385616 MGI:MGI:3629819 NCBI chr20:47,286,843...47,306,318
Ensembl chr20:47,288,137...47,306,318
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 ISO MGI:MGI:1340044 (MGI:MGI:3769085|PMID:17330141) RGD PMID:17330141 MGI:MGI:3769085 NCBI chr10:61,456,144...61,577,412
Ensembl chr10:61,456,145...61,577,412
JBrowse link
G Reln reelin ISO
IEA
MGI:MGI:1856398 (MGI:MGI:5319303|PMID:20847152)
GO_REF:0000107
RGD
Ensembl
PMID:20847152 GO_REF:0000107, MGI:MGI:5319303 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
G Socs7 suppressor of cytokine signaling 7 ISO MGI:MGI:5545789 (MGI:MGI:5545793|PMID:24210661) RGD PMID:24210661 MGI:MGI:5545793 NCBI chr10:85,301,797...85,337,971
Ensembl chr10:85,301,875...85,330,397
JBrowse link
negative regulation of cell motility involved in cerebral cortex radial glia guided migration term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmerb1 bMERB domain containing 1 ISO (MGI:MGI:5578117|PMID:25099998) RGD PMID:25099998 MGI:MGI:5578117 NCBI chr10:3,411,380...3,570,689
Ensembl chr10:3,411,380...3,570,688
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure formation involved in morphogenesis 1213
        layer formation in cerebral cortex 15
          extracellular matrix organization in marginal zone involved in cerebral cortex radial glia guided migration 0
          negative regulation of cell motility involved in cerebral cortex radial glia guided migration 1
          negative regulation of cell-glial cell adhesion involved in cerebral cortex lamination 0
Path 2
Term Annotations click to browse term
  biological_process 20028
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            nervous system development 2722
              central nervous system development 1262
                brain development 966
                  forebrain development 507
                    telencephalon development 338
                      pallium development 233
                        cerebral cortex development 149
                          cerebral cortex cell migration 53
                            cerebral cortex radially oriented cell migration 38
                              cerebral cortex radial glia guided migration 26
                                layer formation in cerebral cortex 15
                                  extracellular matrix organization in marginal zone involved in cerebral cortex radial glia guided migration 0
                                  negative regulation of cell motility involved in cerebral cortex radial glia guided migration 1
                                  negative regulation of cell-glial cell adhesion involved in cerebral cortex lamination 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.