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ONTOLOGY REPORT - ANNOTATIONS


Term:forebrain neuron development
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Accession:GO:0021884 term browser browse the term
Definition:The process whose specific outcome is the progression of a neuron that resides in the forebrain, from its initial commitment to its fate, to the fully functional differentiated cell.


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forebrain neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 IMP induction of dopaminergic neurons in the rostral forebrain RGD PMID:9630220 RGD:2289424 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Gbx2 gastrulation brain homeobox 2 ISO MGI:MGI:1857634 (MGI:MGI:4849329|PMID:21048141) RGD PMID:21048141 MGI:MGI:4849329 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Gnaq G protein subunit alpha q ISO
IEA
MGI:MGI:2151661 (MGI:MGI:3054490|PMID:15340067)
GO_REF:0000107
RGD
Ensembl
PMID:15340067 GO_REF:0000107, MGI:MGI:3054490 NCBI chr 1:233,382,778...233,622,584
Ensembl chr 1:233,382,708...233,622,786
JBrowse link
G Lhx6 LIM homeobox 6 ISO
IBA
MGI:MGI:1096343 (MGI:MGI:3588012|PMID:15217369)
PMID:21873635
RGD PMID:15217369, PMID:21873635 MGI:MGI:3588012, RGD:13792537 NCBI chr 3:15,409,349...15,433,504
Ensembl chr 3:15,411,939...15,433,252
JBrowse link
G Lhx8 LIM homeobox 8 ISO
IBA
MGI:MGI:1306803 (MGI:MGI:3588012|PMID:15217369)
PMID:21873635
RGD PMID:15217369, PMID:21873635 MGI:MGI:3588012, RGD:13792537 NCBI chr 2:260,572,205...260,598,744
Ensembl chr 2:260,574,190...260,596,777
JBrowse link
G Rapgef2 Rap guanine nucleotide exchange factor 2 ISO
ISS
(MGI:MGI:3848551|PMID:19453629)
GO_REF:0000024
RGD
UniProt
PMID:19453629 GO_REF:0000024, MGI:MGI:3848551 NCBI chr 2:177,836,191...178,057,378
Ensembl chr 2:177,836,202...178,057,157
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:MGI:2137412 (MGI:MGI:3583071|PMID:15882093) RGD PMID:15882093 MGI:MGI:3583071
G Tfap2a transcription factor AP-2 alpha ISO MGI:MGI:1888387 (MGI:MGI:1855759|PMID:10803593) RGD PMID:10803593 MGI:MGI:1855759 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit1 slit guidance ligand 1 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr 1:260,843,481...260,992,366
Ensembl chr 1:260,843,483...260,992,366
JBrowse link
G Slit2 slit guidance ligand 2 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
G Slit3 slit guidance ligand 3 NOT ISO (PMID:11748139) RGD PMID:11748139 NCBI chr10:19,924,200...20,517,918
Ensembl chr10:20,320,878...20,518,518
JBrowse link
chemorepulsion involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Robo1 roundabout guidance receptor 1 IEA
ISO
GO_REF:0000107
(PMID:15207848)
Ensembl
RGD
PMID:15207848 GO_REF:0000107 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Slit2 slit guidance ligand 2 IEA
ISO
GO_REF:0000107
(PMID:15207848)
Ensembl
RGD
PMID:15207848 GO_REF:0000107 NCBI chr14:66,831,848...67,171,491
Ensembl chr14:66,831,848...67,170,361
JBrowse link
embryonic olfactory bulb interneuron precursor migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox ISO
IEA
MGI:MGI:2429693 (MGI:MGI:3574008|PMID:15677725)
GO_REF:0000107
RGD
Ensembl
PMID:15677725 GO_REF:0000107, MGI:MGI:3574008 NCBI chr  X:62,363,757...62,376,139
Ensembl chr  X:62,363,757...62,376,143
JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:MGI:1932522|MGI:MGI:2663662 (MGI:MGI:3709518|PMID:17409253) RGD PMID:17409253 MGI:MGI:3709518 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
gonadotrophin-releasing hormone neuronal migration to the hypothalamus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:MGI:4850173 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:MGI:4850173 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:MGI:4850173|PMID:21059704) RGD PMID:21059704 MGI:MGI:4850173 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
hypothalamus gonadotrophin-releasing hormone neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubb ubiquitin B ISO MGI:MGI:3774112 (MGI:MGI:3776935|PMID:18299572) RGD PMID:18299572 MGI:MGI:3776935 NCBI chr10:48,880,231...48,881,896
Ensembl chr10:48,881,049...48,881,881
JBrowse link
motogenic signaling involved in postnatal olfactory bulb interneuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 Fibroblast growth factor receptor 1 IMP RGD PMID:20083104 RGD:2325172 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449
JBrowse link
olfactory bulb interneuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf5 activating transcription factor 5 ISO
IEA
MGI:MGI:5467393 (MGI:MGI:5461281|PMID:23090999)
GO_REF:0000107
RGD
Ensembl
PMID:23090999 GO_REF:0000107, MGI:MGI:5461281 NCBI chr 1:100,807,821...100,812,410
Ensembl chr 1:100,808,241...100,810,522
JBrowse link
G Robo1 roundabout guidance receptor 1 ISO UniProtKB:Q7TPD3 (MGI:MGI:3702250|PMID:17360927) RGD PMID:17360927 MGI:MGI:3702250 NCBI chr11:9,079,291...10,146,302
Ensembl chr11:9,642,365...10,143,317
JBrowse link
G Robo2 roundabout guidance receptor 2 ISO (MGI:MGI:3702250|PMID:17360927) RGD PMID:17360927 MGI:MGI:3702250 NCBI chr11:11,062,866...12,618,793
Ensembl chr11:11,062,790...11,585,765
JBrowse link
G Sall3 spalt-like transcription factor 3 ISO MGI:MGI:3052730 (MGI:MGI:3798379|PMID:18260139) RGD PMID:18260139 MGI:MGI:3798379 NCBI chr18:77,572,200...77,591,710
Ensembl chr18:77,573,702...77,579,969
JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO
GO_REF:0000107
(MGI:MGI:5285122|PMID:21539518)
Ensembl
RGD
PMID:21539518 GO_REF:0000107, MGI:MGI:5285122 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860
JBrowse link
pyramidal neuron development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg7 autophagy related 7 ISO MGI:MGI:2386545|MGI:MGI:3587769 (MGI:MGI:3630371|PMID:16625205) RGD PMID:16625205 MGI:MGI:3630371 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124
JBrowse link
G Atp7a ATPase copper transporting alpha ISO MGI:MGI:1856466 (MGI:MGI:71790|PMID:2473662) RGD PMID:2473662 MGI:MGI:71790 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Dclk2 doublecortin-like kinase 2 ISO MGI:MGI:1277171 (MGI:MGI:3844387|PMID:19342486) RGD PMID:19342486 MGI:MGI:3844387 NCBI chr 2:186,116,624...186,245,937
Ensembl chr 2:186,116,624...186,245,771
JBrowse link
G Dcx doublecortin ISO
IEA
MGI:MGI:1918012 (MGI:MGI:3844387|PMID:19342486)
GO_REF:0000107
RGD
Ensembl
PMID:19342486 GO_REF:0000107, MGI:MGI:3844387 NCBI chr  X:115,098,675...115,175,515
Ensembl chr  X:115,098,675...115,175,299
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (MGI:MGI:4452541|PMID:20410112) RGD PMID:20410112 MGI:MGI:4452541 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928
JBrowse link
G Ogdh oxoglutarate dehydrogenase ISO (PMID:16901643) RGD PMID:16901643 NCBI chr14:86,414,924...86,481,903
Ensembl chr14:86,414,949...86,613,327
JBrowse link
G Plxna3 plexin A3 ISO MGI:MGI:2386961 (MGI:MGI:2152659|PMID:11683995) RGD PMID:11683995 MGI:MGI:2152659 NCBI chr  X:156,363,400...156,379,433
Ensembl chr  X:156,363,405...156,379,189
JBrowse link
G Scyl2 SCY1 like pseudokinase 2 IEA
ISO
GO_REF:0000107
(MGI:MGI:5694521|PMID:26203146)
Ensembl
RGD
PMID:26203146 GO_REF:0000107, MGI:MGI:5694521 NCBI chr 7:30,291,087...30,344,464
Ensembl chr 7:30,291,087...30,344,445
JBrowse link
G Slc4a10 solute carrier family 4 member 10 ISO MGI:MGI:3774019 (MGI:MGI:3772751|PMID:18165320) RGD PMID:18165320 MGI:MGI:3772751 NCBI chr 3:47,995,812...48,287,897
Ensembl chr 3:47,995,959...48,287,910
JBrowse link
G Uqcrq ubiquinol-cytochrome c reductase, complex III subunit VII ISO (PMID:16901643) RGD PMID:16901643 NCBI chr10:38,779,132...38,782,489
Ensembl chr10:38,779,132...38,782,419
JBrowse link
pyramidal neuron migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Disc1 DISC1 scaffold protein IMP RGD PMID:16299498 RGD:5509783 NCBI chr19:57,818,838...58,069,992
Ensembl chr19:57,820,260...58,066,152
JBrowse link
G Foxg1 forkhead box G1 ISO (MGI:MGI:5440366|PMID:22726835) RGD PMID:22726835 MGI:MGI:5440366 NCBI chr 6:69,971,227...69,974,037
Ensembl chr 6:69,971,227...69,974,037
JBrowse link
G Zmiz1 zinc finger, MIZ-type containing 1 ISO (PMID:30639322) RGD PMID:30639322 NCBI chr16:1,749,191...1,954,633
Ensembl chr16:1,749,191...1,954,614
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      cellular developmental process 4459
        cell development 2440
          neuron development 1323
            central nervous system neuron development 101
              forebrain neuron development 36
                hypothalamus gonadotrophin-releasing hormone neuron development + 4
                olfactory bulb interneuron development + 11
                pyramidal neuron development + 13
Path 2
Term Annotations click to browse term
  biological_process 20027
    developmental process 6827
      anatomical structure development 6269
        multicellular organism development 5744
          system development 5280
            nervous system development 2722
              neurogenesis 1938
                generation of neurons 1781
                  neuron differentiation 1617
                    neuron development 1323
                      central nervous system neuron development 101
                        forebrain neuron development 36
                          hypothalamus gonadotrophin-releasing hormone neuron development + 4
                          olfactory bulb interneuron development + 11
                          pyramidal neuron development + 13
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.