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ONTOLOGY REPORT - ANNOTATIONS


Term:rostrocaudal neural tube patterning
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Accession:GO:0021903 term browser browse the term
Definition:The process in which the neural tube is divided into specific regions along the rostrocaudal axis.
Synonyms:related_synonym: anterior-posterior neural tube patterning


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rostrocaudal neural tube patterning term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:11,137,889...11,164,854
Ensembl chr  X:11,136,939...11,164,915
JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO MGI:MGI:1857632 (MGI:MGI:82985|PMID:8887324) RGD PMID:8887324 MGI:MGI:82985 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208
JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:MGI:2179440 (MGI:MGI:4421275|PMID:19913509) RGD PMID:19913509 MGI:MGI:4421275 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907
JBrowse link
forebrain-midbrain boundary formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax6 paired box 6 ISO
IEA
MGI:MGI:1856155|MGI:MGI:1856158 (MGI:MGI:892757|PMID:9169845)
GO_REF:0000107
RGD
Ensembl
PMID:9169845 GO_REF:0000107, MGI:MGI:892757 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
midbrain-hindbrain boundary development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G En1 engrailed homeobox 1 ISO
IEA
MGI:MGI:1857163 (MGI:MGI:3525936|PMID:15607945)
GO_REF:0000107
RGD
Ensembl
PMID:15607945 GO_REF:0000107, MGI:MGI:3525936 NCBI chr13:36,532,758...36,537,888
Ensembl chr13:36,532,758...36,537,093
JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:MGI:2150347 (MGI:MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:MGI:3720541 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831
JBrowse link
G Gbx2 gastrulation brain homeobox 2 ISO MGI:MGI:1857634 (MGI:MGI:3624192|PMID:16651541) RGD PMID:16651541 MGI:MGI:3624192 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA
MGI:MGI:2156191 (MGI:MGI:1891551|PMID:11029008), (MGI:MGI:4413372|PMID:19795512)
PMID:21873635
RGD PMID:11029008, PMID:19795512, PMID:21873635 MGI:MGI:1891551, MGI:MGI:4413372, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:MGI:1857490 (MGI:MGI:59176|PMID:2205396) RGD PMID:2205396 MGI:MGI:59176 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
midbrain-hindbrain boundary initiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssbp3 single stranded DNA binding protein 3 IEA
ISO
GO_REF:0000107
(MGI:MGI:3578570|PMID:15857913)
Ensembl
RGD
PMID:15857913 GO_REF:0000107, MGI:MGI:3578570 NCBI chr 5:126,511,339...126,649,830
Ensembl chr 5:126,511,350...126,648,661
JBrowse link
midbrain-hindbrain boundary maturation during brain development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt1 Wnt family member 1 ISO MGI:MGI:1856382 (MGI:MGI:76584|PMID:8555108) RGD PMID:8555108 MGI:MGI:76584 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
midbrain-hindbrain boundary morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gbx2 gastrulation brain homeobox 2 ISO MGI:MGI:1857634 (MGI:MGI:3624192|PMID:16651541) RGD PMID:16651541 MGI:MGI:3624192 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817
JBrowse link
G Hes1 hes family bHLH transcription factor 1 ISO
IEA
MGI:MGI:104877 (MGI:MGI:2149154|PMID:11500373)
GO_REF:0000107
RGD
Ensembl
PMID:11500373 GO_REF:0000107, MGI:MGI:2149154 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248
JBrowse link
G Hes3 hes family bHLH transcription factor 3 ISO MGI:MGI:104853 (MGI:MGI:2149134|PMID:11522634) RGD PMID:11522634 MGI:MGI:2149134 NCBI chr 5:169,463,196...169,469,795
Ensembl chr 5:169,464,989...169,467,153
JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956
JBrowse link
zona limitans intrathalamica formation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule IDA RGD PMID:25281935 RGD:12832757 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    multicellular organismal process 9055
      pattern specification process 496
        regionalization 392
          neural tube patterning 49
            rostrocaudal neural tube patterning 14
              forebrain-midbrain boundary formation 1
              hindbrain-spinal cord boundary formation 0
              midbrain-hindbrain boundary development + 9
              zona limitans intrathalamica formation 1
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          embryo development 1303
            embryo development ending in birth or egg hatching 859
              chordate embryonic development 843
                neural tube development 196
                  neural tube patterning 49
                    rostrocaudal neural tube patterning 14
                      forebrain-midbrain boundary formation 1
                      hindbrain-spinal cord boundary formation 0
                      midbrain-hindbrain boundary development + 9
                      zona limitans intrathalamica formation 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.