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ONTOLOGY REPORT - ANNOTATIONS


Term:central nervous system projection neuron axonogenesis
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Accession:GO:0021952 term browser browse the term
Definition:Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region.
Synonyms:narrow_synonym: central nervous system axon tract development


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central nervous system projection neuron axonogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit ISO (MGI:2181503|PMID:11344259), (MGI:2683795|PMID:14687550)
(MGI:3527366|PMID:15608630)
MGI PMID:11344259, PMID:14687550, PMID:15608630 MGI:2181503, MGI:2683795, MGI:3527366 NCBI chr 1:129,922,740...129,931,582
Ensembl chr 1:133,535,023...133,547,361
JBrowse link
G DCLK1 doublecortin like kinase 1 ISO (MGI:3614628|PMID:16387638) MGI PMID:16387638 MGI:3614628 NCBI chr13:16,988,340...17,342,911
Ensembl chr13:35,425,382...35,768,935
JBrowse link
G DCX doublecortin ISO (MGI:3614628|PMID:16387638) MGI PMID:16387638 MGI:3614628 NCBI chr  X:100,411,871...100,529,833
Ensembl chr  X:110,875,032...110,988,582
JBrowse link
G EPHB1 EPH receptor B1 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 3:131,841,459...132,309,082
Ensembl chr 3:139,313,387...139,776,802
JBrowse link
G EPHB2 EPH receptor B2 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 1:21,895,961...22,107,649
Ensembl chr 1:22,912,570...23,047,118
JBrowse link
G EPHB3 EPH receptor B3 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 3:181,604,188...181,624,744
Ensembl chr 3:190,089,522...190,104,905
JBrowse link
G MYCBP2 MYC binding protein 2 ISO (MGI:3776727|PMID:18031680)
(MGI:3759703|PMID:17901218)
MGI
UniProt
PMID:17901218, PMID:18031680 MGI:3759703, MGI:3776727 NCBI chr13:58,262,251...58,544,819
Ensembl chr13:77,306,509...77,586,843
JBrowse link
G NR4A2 nuclear receptor subfamily 4 group A member 2 ISO (MGI:1350702|PMID:10585298) MGI PMID:10585298 MGI:1350702 NCBI chr2B:43,584,835...43,593,118
Ensembl chr2B:160,826,091...160,837,162
JBrowse link
G PRDM8 PR/SET domain 8 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 4:43,993,635...44,014,430 JBrowse link
G SPTBN4 spectrin beta, non-erythrocytic 4 ISO (MGI:3708238|PMID:17197442) MGI PMID:17197442 MGI:3708238 NCBI chr19:37,515,420...37,621,473
Ensembl chr19:46,042,387...46,127,429
JBrowse link
anterior commissure morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G FBXO45 F-box protein 45 ISO (MGI:3849342|PMID:19398581) MGI PMID:19398581 MGI:3849342 NCBI chr 3:193,913,712...193,934,123 JBrowse link
G NFIB nuclear factor I B ISO (MGI:4453290|PMID:19961580) UniProt PMID:19961580 MGI:4453290 NCBI chr 9:13,923,516...14,376,264 JBrowse link
G NR2E1 nuclear receptor subfamily 2 group E member 1 ISO (MGI:2151063|PMID:11997145) MGI PMID:11997145 MGI:2151063 NCBI chr 6:105,965,478...105,988,213
Ensembl chr 6:109,831,223...109,851,436
JBrowse link
G PLXNA4 plexin A4 ISO (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chr 7:124,097,028...124,621,504
Ensembl chr 7:136,643,657...136,992,405
JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan ISO (MGI:4848234|PMID:21055390) MGI PMID:21055390 MGI:4848234 NCBI chr11:71,833,654...71,848,509
Ensembl chr11:75,492,912...75,493,973
JBrowse link
corpus callosum morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G C12H12orf57 chromosome 12 C12orf57 homolog ISO (PMID:23453665), (PMID:23453666), (PMID:23633300), (PMID:24798461) UniProtKB PMID:23453665, PMID:23453666, PMID:23633300, PMID:24798461 NCBI chr12:7,073,251...7,075,408
Ensembl chr12:6,978,576...6,990,580
JBrowse link
G NIN ninein ISO (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chr14:31,308,388...31,420,045
Ensembl chr14:49,609,368...49,719,971
JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO (PMID:9063735) BHF-UCL PMID:9063735 NCBI chr17:2,584,349...2,676,928
Ensembl chr17:2,590,007...2,680,994
JBrowse link
G PRDM8 PR/SET domain 8 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 4:43,993,635...44,014,430 JBrowse link
G SZT2 SZT2 subunit of KICSTOR complex ISO (PMID:23932106) UniProtKB PMID:23932106 NCBI chr 1:42,691,292...42,754,046
Ensembl chr 1:44,068,998...44,129,456
JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan ISO (MGI:4848234|PMID:21055390) MGI PMID:21055390 MGI:4848234 NCBI chr11:71,833,654...71,848,509
Ensembl chr11:75,492,912...75,493,973
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 ISO (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500
JBrowse link
corticospinal neuron axon guidance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCN1B sodium voltage-gated channel beta subunit 1 ISO (MGI:3778100|PMID:18354028) MGI PMID:18354028 MGI:3778100 NCBI chr19:31,974,499...31,984,488 JBrowse link
corticospinal neuron axon guidance through spinal cord term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SLIT2 slit guidance ligand 2 ISO (PMID:10975526) BHF-UCL PMID:10975526 NCBI chr 4:14,654,448...15,023,708
Ensembl chr 4:20,158,952...20,314,656
JBrowse link
corticospinal tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G CDH11 cadherin 11 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr16:45,261,269...45,436,597
Ensembl chr16:64,367,862...64,475,028
JBrowse link
G EPHA4 EPH receptor A4 ISO (MGI:1306963|PMID:9789074) UniProt PMID:9789074 MGI:1306963 NCBI chr2B:108,664,475...108,818,802
Ensembl chr2B:227,248,958...227,402,790
JBrowse link
G FBXO45 F-box protein 45 ISO (MGI:3849342|PMID:19398581) MGI PMID:19398581 MGI:3849342 NCBI chr 3:193,913,712...193,934,123 JBrowse link
G NIN ninein ISO (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chr14:31,308,388...31,420,045
Ensembl chr14:49,609,368...49,719,971
JBrowse link
G PRDM8 PR/SET domain 8 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 4:43,993,635...44,014,430 JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 ISO (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chr2B:15,325,094...15,460,908
Ensembl chr2B:148,460,904...148,596,500
JBrowse link
spinal cord ventral commissure morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADARB1 adenosine deaminase RNA specific B1 ISO (MGI:4831065|PMID:20826656) MGI PMID:20826656 MGI:4831065 NCBI chr21:31,374,841...31,532,721
Ensembl chr21:44,715,931...44,815,748
JBrowse link
G DCC DCC netrin 1 receptor ISO (MGI:87114|PMID:9126737) MGI PMID:9126737 MGI:87114 NCBI chr18:45,717,924...46,913,998
Ensembl chr18:49,268,812...50,255,155
JBrowse link
G GLI2 GLI family zinc finger 2 ISO (MGI:1340208|PMID:10409510) MGI PMID:10409510 MGI:1340208 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12566
    developmental process 5839
      anatomical structure development 5452
        cell development 2155
          neuron development 1170
            central nervous system neuron development 99
              central nervous system neuron axonogenesis 41
                central nervous system projection neuron axonogenesis 28
                  anterior commissure morphogenesis 6
                  corpus callosum morphogenesis 8
                  corticospinal tract morphogenesis + 9
                  cuneatus tract morphogenesis 0
                  gracilis tract morphogenesis 0
                  medulla reticulospinal tract morphogenesis 0
                  pons reticulospinal tract morphogenesis 0
                  posterior commissure morphogenesis 0
                  rubrospinal tract morphogenesis 0
                  spinal cord ventral commissure morphogenesis 3
                  spinothalamic tract morphogenesis 0
                  tectobulbar tract morphogenesis 0
                  tectospinal tract morphogenesis 0
                  trigeminothalamic tract morphogenesis 0
                  vestibulospinal tract morphogenesis 0
Path 2
Term Annotations click to browse term
  biological_process 12566
    developmental process 5839
      anatomical structure development 5452
        multicellular organism development 4984
          system development 4688
            nervous system development 2406
              neurogenesis 1723
                generation of neurons 1578
                  neuron differentiation 1429
                    neuron development 1170
                      neuron projection development 1031
                        neuron projection morphogenesis 612
                          axonogenesis 398
                            central nervous system neuron axonogenesis 41
                              central nervous system projection neuron axonogenesis 28
                                anterior commissure morphogenesis 6
                                corpus callosum morphogenesis 8
                                corticospinal tract morphogenesis + 9
                                cuneatus tract morphogenesis 0
                                gracilis tract morphogenesis 0
                                medulla reticulospinal tract morphogenesis 0
                                pons reticulospinal tract morphogenesis 0
                                posterior commissure morphogenesis 0
                                rubrospinal tract morphogenesis 0
                                spinal cord ventral commissure morphogenesis 3
                                spinothalamic tract morphogenesis 0
                                tectobulbar tract morphogenesis 0
                                tectospinal tract morphogenesis 0
                                trigeminothalamic tract morphogenesis 0
                                vestibulospinal tract morphogenesis 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.