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ONTOLOGY REPORT - ANNOTATIONS


Term:central nervous system projection neuron axonogenesis
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Accession:GO:0021952 term browser browse the term
Definition:Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region.
Synonyms:narrow_synonym: central nervous system axon tract development


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central nervous system projection neuron axonogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit ISO (MGI:3527366|PMID:15608630)
(MGI:2181503|PMID:11344259), (MGI:2683795|PMID:14687550)
MGI PMID:11344259, PMID:14687550, PMID:15608630 MGI:2181503, MGI:2683795, MGI:3527366 NCBI chrNW_004955545:1,065,457...1,077,056
Ensembl chrNW_004955545:1,065,457...1,077,526
JBrowse link
G Dclk1 doublecortin like kinase 1 ISO (MGI:3614628|PMID:16387638) MGI PMID:16387638 MGI:3614628 NCBI chrNW_004955431:9,975,629...10,302,605
Ensembl chrNW_004955431:9,975,262...10,297,010
JBrowse link
G Dcx doublecortin ISO (MGI:3614628|PMID:16387638) MGI PMID:16387638 MGI:3614628 NCBI chrNW_004955490:4,354,307...4,469,055
Ensembl chrNW_004955490:4,354,307...4,469,055
JBrowse link
G Ephb1 EPH receptor B1 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chrNW_004955501:3,424,112...3,821,727
Ensembl chrNW_004955501:3,423,977...3,821,890
JBrowse link
G Ephb2 EPH receptor B2 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
JBrowse link
G Ephb3 EPH receptor B3 ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chrNW_004955420:22,900,588...22,919,924
Ensembl chrNW_004955420:22,901,337...22,920,712
JBrowse link
G Mycbp2 MYC binding protein 2 ISO (MGI:3759703|PMID:17901218)
(MGI:3776727|PMID:18031680)
UniProt
MGI
PMID:17901218, PMID:18031680 MGI:3759703, MGI:3776727 NCBI chrNW_004955404:29,932,125...30,186,236
Ensembl chrNW_004955404:29,932,125...30,186,236
JBrowse link
G Nr4a2 nuclear receptor subfamily 4 group A member 2 ISO (MGI:1350702|PMID:10585298) MGI PMID:10585298 MGI:1350702 NCBI chrNW_004955449:16,928,780...16,944,536
Ensembl chrNW_004955449:16,937,794...16,945,731
JBrowse link
G Prdm8 PR/SET domain 8 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chrNW_004955433:4,443,339...4,463,687
Ensembl chrNW_004955433:4,459,669...4,462,928
JBrowse link
G Sptbn4 spectrin beta, non-erythrocytic 4 ISO (MGI:3708238|PMID:17197442) MGI PMID:17197442 MGI:3708238 NCBI chrNW_004955578:730,916...813,740
Ensembl chrNW_004955578:731,814...810,065
JBrowse link
anterior commissure morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Fbxo45 F-box protein 45 ISO (MGI:3849342|PMID:19398581) MGI PMID:19398581 MGI:3849342 NCBI chrNW_004955420:12,714,749...12,727,600
Ensembl chrNW_004955420:12,714,608...12,726,113
JBrowse link
G Nfib nuclear factor I B ISO (MGI:4453290|PMID:19961580) UniProt PMID:19961580 MGI:4453290 NCBI chrNW_004955434:17,192,188...17,603,503
Ensembl chrNW_004955434:17,198,571...17,415,084
JBrowse link
G Nr2e1 nuclear receptor subfamily 2 group E member 1 ISO (MGI:2151063|PMID:11997145) MGI PMID:11997145 MGI:2151063 NCBI chrNW_004955411:33,303,765...33,325,221
Ensembl chrNW_004955411:33,303,655...33,325,376
JBrowse link
G Plxna4 plexin A4 ISO (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan ISO (MGI:4848234|PMID:21055390) MGI PMID:21055390 MGI:4848234 NCBI chrNW_004955414:15,166,349...15,178,284
Ensembl chrNW_004955414:15,166,349...15,178,284
JBrowse link
corpus callosum morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G LOC102009926 chromosome unknown open reading frame, human C12orf57 ISO (PMID:23453665), (PMID:23453666), (PMID:23633300), (PMID:24798461) UniProtKB PMID:23453665, PMID:23453666, PMID:23633300, PMID:24798461 NCBI chrNW_004955413:4,524,236...4,525,760
Ensembl chrNW_004955413:4,524,236...4,525,760
JBrowse link
G Nin ninein ISO (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chrNW_004955409:12,074,895...12,174,899
Ensembl chrNW_004955409:12,075,543...12,174,977
JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ISO (PMID:9063735) BHF-UCL PMID:9063735 NCBI chrNW_004955481:608,897...686,454
Ensembl chrNW_004955481:608,897...686,452
JBrowse link
G Prdm8 PR/SET domain 8 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chrNW_004955433:4,443,339...4,463,687
Ensembl chrNW_004955433:4,459,669...4,462,928
JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex ISO (PMID:23932106) UniProtKB PMID:23932106 NCBI chrNW_004955537:2,968,839...3,017,863
Ensembl chrNW_004955537:2,968,839...3,017,863
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan ISO (MGI:4848234|PMID:21055390) MGI PMID:21055390 MGI:4848234 NCBI chrNW_004955414:15,166,349...15,178,284
Ensembl chrNW_004955414:15,166,349...15,178,284
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491
JBrowse link
corticospinal neuron axon guidance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scn1b sodium voltage-gated channel beta subunit 1 ISO (MGI:3778100|PMID:18354028) MGI PMID:18354028 MGI:3778100 NCBI chrNW_004955468:4,375,517...4,383,383
Ensembl chrNW_004955468:4,375,157...4,383,502
JBrowse link
corticospinal neuron axon guidance through spinal cord term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit2 slit guidance ligand 2 ISO (PMID:10975526) BHF-UCL PMID:10975526 NCBI chrNW_004955480:3,982,977...4,314,160
Ensembl chrNW_004955480:3,984,586...4,313,908
JBrowse link
corticospinal tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Cdh11 cadherin 11 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chrNW_004955433:21,613,909...21,770,968
Ensembl chrNW_004955433:21,612,297...21,687,281
JBrowse link
G Epha4 EPH receptor A4 ISO (MGI:1306963|PMID:9789074) UniProt PMID:9789074 MGI:1306963 NCBI chrNW_004955453:12,099,800...12,240,199
Ensembl chrNW_004955453:12,099,757...12,240,199
JBrowse link
G Fbxo45 F-box protein 45 ISO (MGI:3849342|PMID:19398581) MGI PMID:19398581 MGI:3849342 NCBI chrNW_004955420:12,714,749...12,727,600
Ensembl chrNW_004955420:12,714,608...12,726,113
JBrowse link
G Nin ninein ISO (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chrNW_004955409:12,074,895...12,174,899
Ensembl chrNW_004955409:12,075,543...12,174,977
JBrowse link
G Prdm8 PR/SET domain 8 ISO (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chrNW_004955433:4,443,339...4,463,687
Ensembl chrNW_004955433:4,459,669...4,462,928
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 ISO (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chrNW_004955440:10,755,658...10,881,044
Ensembl chrNW_004955440:10,756,014...10,795,491
JBrowse link
spinal cord ventral commissure morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase RNA specific B1 ISO (MGI:4831065|PMID:20826656) MGI PMID:20826656 MGI:4831065 NCBI chrNW_004955407:41,886,286...41,962,846
Ensembl chrNW_004955407:41,886,286...41,962,897
JBrowse link
G Dcc DCC netrin 1 receptor ISO (MGI:87114|PMID:9126737) MGI PMID:9126737 MGI:87114 NCBI chrNW_004955402:37,123,112...38,218,876
Ensembl chrNW_004955402:37,123,795...38,218,472
JBrowse link
G Gli2 GLI family zinc finger 2 ISO (MGI:1340208|PMID:10409510) MGI PMID:10409510 MGI:1340208 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11892
    developmental process 5616
      anatomical structure development 5254
        cell development 2101
          neuron development 1148
            central nervous system neuron development 97
              central nervous system neuron axonogenesis 41
                central nervous system projection neuron axonogenesis 28
                  anterior commissure morphogenesis 6
                  corpus callosum morphogenesis 8
                  corticospinal tract morphogenesis + 9
                  cuneatus tract morphogenesis 0
                  gracilis tract morphogenesis 0
                  medulla reticulospinal tract morphogenesis 0
                  pons reticulospinal tract morphogenesis 0
                  posterior commissure morphogenesis 0
                  rubrospinal tract morphogenesis 0
                  spinal cord ventral commissure morphogenesis 3
                  spinothalamic tract morphogenesis 0
                  tectobulbar tract morphogenesis 0
                  tectospinal tract morphogenesis 0
                  trigeminothalamic tract morphogenesis 0
                  vestibulospinal tract morphogenesis 0
Path 2
Term Annotations click to browse term
  biological_process 11892
    developmental process 5616
      anatomical structure development 5254
        multicellular organism development 4812
          system development 4532
            nervous system development 2347
              neurogenesis 1687
                generation of neurons 1551
                  neuron differentiation 1403
                    neuron development 1148
                      neuron projection development 1012
                        neuron projection morphogenesis 605
                          axonogenesis 396
                            central nervous system neuron axonogenesis 41
                              central nervous system projection neuron axonogenesis 28
                                anterior commissure morphogenesis 6
                                corpus callosum morphogenesis 8
                                corticospinal tract morphogenesis + 9
                                cuneatus tract morphogenesis 0
                                gracilis tract morphogenesis 0
                                medulla reticulospinal tract morphogenesis 0
                                pons reticulospinal tract morphogenesis 0
                                posterior commissure morphogenesis 0
                                rubrospinal tract morphogenesis 0
                                spinal cord ventral commissure morphogenesis 3
                                spinothalamic tract morphogenesis 0
                                tectobulbar tract morphogenesis 0
                                tectospinal tract morphogenesis 0
                                trigeminothalamic tract morphogenesis 0
                                vestibulospinal tract morphogenesis 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.