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ONTOLOGY REPORT - ANNOTATIONS


Term:central nervous system projection neuron axonogenesis
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Accession:GO:0021952 term browser browse the term
Definition:Generation of a long process of a CNS neuron, that carries efferent (outgoing) action potentials from the cell body towards target cells in a different central nervous system region.
Synonyms:narrow_synonym: central nervous system axon tract development


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central nervous system projection neuron axonogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 IMP (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 3:18,054,325...18,057,514
Ensembl chr 3:18,054,174...18,057,517
JBrowse link
G Chrnb2 cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal) IMP (MGI:3527366|PMID:15608630)
(MGI:2181503|PMID:11344259), (MGI:2683795|PMID:14687550)
MGI PMID:11344259, PMID:14687550, PMID:15608630 MGI:2181503, MGI:2683795, MGI:3527366 NCBI chr 3:89,753,448...89,764,632
Ensembl chr 3:89,746,195...89,764,632
JBrowse link
G Dclk1 doublecortin-like kinase 1 IGI (MGI:3614628|PMID:16387638) MGI PMID:16387638 MGI:3614628 NCBI chr 3:55,242,303...55,539,068
Ensembl chr 3:55,242,364...55,539,068
JBrowse link
G Dcx doublecortin IGI (MGI:3614628|PMID:16387638) MGI PMID:16387638 MGI:3614628 NCBI chr  X:143,855,842...143,933,396
Ensembl chr  X:143,855,842...143,933,311
JBrowse link
G Ephb1 Eph receptor B1 IMP
IDA
(MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 9:101,922,128...102,354,693
Ensembl chr 9:101,922,128...102,354,693
JBrowse link
G Ephb2 Eph receptor B2 IMP
IBA
(MGI:2675767|PMID:12971893)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:12971893, PMID:21873635 MGI:2675767, MGI:6201960 NCBI chr 4:136,647,536...136,836,326
Ensembl chr 4:136,647,539...136,835,988
JBrowse link
G Ephb3 Eph receptor B3 IDA (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr16:21,204,620...21,223,309
Ensembl chr16:21,204,755...21,223,305
JBrowse link
G Ephb6 Eph receptor B6 IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:41,603,834...41,620,509
Ensembl chr 6:41,605,482...41,620,509
JBrowse link
G Mycbp2 MYC binding protein 2, E3 ubiquitin protein ligase IMP (MGI:3759703|PMID:17901218)
(MGI:3776727|PMID:18031680)
UniProt
MGI
PMID:17901218, PMID:18031680 MGI:3759703, MGI:3776727 NCBI chr14:103,113,411...103,346,840
Ensembl chr14:103,113,411...103,346,814
JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IMP (MGI:1350702|PMID:10585298) MGI PMID:10585298 MGI:1350702 NCBI chr 2:57,106,830...57,124,003
Ensembl chr 2:57,106,830...57,124,003
JBrowse link
G Prdm8 PR domain containing 8 IMP (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 5:98,167,203...98,187,454
Ensembl chr 5:98,167,198...98,188,991
JBrowse link
G Sptbn4 spectrin beta, non-erythrocytic 4 IMP (MGI:3708238|PMID:17197442) MGI PMID:17197442 MGI:3708238 NCBI chr 7:27,356,383...27,447,704
Ensembl chr 7:27,356,383...27,447,686
JBrowse link
anterior commissure morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 IMP (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 3:18,054,325...18,057,514
Ensembl chr 3:18,054,174...18,057,517
JBrowse link
G Fbxo45 F-box protein 45 IMP (MGI:3849342|PMID:19398581) MGI PMID:19398581 MGI:3849342 NCBI chr16:32,230,112...32,247,025
Ensembl chr16:32,230,112...32,247,158
JBrowse link
G Nfib nuclear factor I/B IMP (MGI:4453290|PMID:19961580) UniProt PMID:19961580 MGI:4453290 NCBI chr 4:82,290,173...82,506,751
Ensembl chr 4:82,290,173...82,705,750
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 IMP (MGI:2151063|PMID:11997145) MGI PMID:11997145 MGI:2151063 NCBI chr10:42,561,963...42,583,590
Ensembl chr10:42,561,963...42,583,632
JBrowse link
G Plxna4 plexin A4 IMP (MGI:3578029|PMID:15814794) MGI PMID:15814794 MGI:3578029 NCBI chr 6:32,144,543...32,588,192
Ensembl chr 6:32,144,268...32,588,192
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan IMP (MGI:4848234|PMID:21055390) MGI PMID:21055390 MGI:4848234 NCBI chr 7:98,350,668...98,361,390
Ensembl chr 7:98,350,668...98,361,328
JBrowse link
corpus callosum morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 IMP (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 3:18,054,325...18,057,514
Ensembl chr 3:18,054,174...18,057,517
JBrowse link
G Grcc10 gene rich cluster, C10 gene ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 6:124,739,183...124,741,069
Ensembl chr 6:124,739,183...124,741,374
JBrowse link
G Nin ninein IGI (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chr12:70,011,435...70,113,811
Ensembl chr12:70,011,435...70,113,717
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr11:74,673,949...74,724,384
Ensembl chr11:74,673,949...74,724,670
JBrowse link
G Prdm8 PR domain containing 8 IMP (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 5:98,167,203...98,187,454
Ensembl chr 5:98,167,198...98,188,991
JBrowse link
G Szt2 SZT2 subunit of KICSTOR complex ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 4:118,362,740...118,409,286
Ensembl chr 4:118,362,743...118,409,273
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan IMP (MGI:4848234|PMID:21055390) MGI PMID:21055390 MGI:4848234 NCBI chr 7:98,350,668...98,361,390
Ensembl chr 7:98,350,668...98,361,328
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 IMP (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chr 2:44,983,512...45,117,442
Ensembl chr 2:44,983,632...45,117,395
JBrowse link
corticospinal neuron axon guidance term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scn1b sodium channel, voltage-gated, type I, beta IMP (MGI:3778100|PMID:18354028) MGI PMID:18354028 MGI:3778100 NCBI chr 7:31,116,524...31,127,023
Ensembl chr 7:31,116,524...31,127,003
JBrowse link
corticospinal neuron axon guidance through spinal cord term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slit2 slit guidance ligand 2 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 5:47,981,291...48,307,735
Ensembl chr 5:47,983,138...48,307,733
JBrowse link
corticospinal tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 IMP
IGI
(MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 3:18,054,325...18,057,514
Ensembl chr 3:18,054,174...18,057,517
JBrowse link
G Cdh11 cadherin 11 IGI (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 8:102,632,095...102,785,493
Ensembl chr 8:102,632,095...102,785,642
JBrowse link
G Epha4 Eph receptor A4 IMP (MGI:1306963|PMID:9789074) UniProt PMID:9789074 MGI:1306963 NCBI chr 1:77,367,182...77,515,107
Ensembl chr 1:77,367,185...77,515,088
JBrowse link
G Fbxo45 F-box protein 45 IMP (MGI:3849342|PMID:19398581) MGI PMID:19398581 MGI:3849342 NCBI chr16:32,230,112...32,247,025
Ensembl chr16:32,230,112...32,247,158
JBrowse link
G Nin ninein IGI (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chr12:70,011,435...70,113,811
Ensembl chr12:70,011,435...70,113,717
JBrowse link
G Prdm8 PR domain containing 8 IMP (MGI:5315201|PMID:22284184) MGI PMID:22284184 MGI:5315201 NCBI chr 5:98,167,203...98,187,454
Ensembl chr 5:98,167,198...98,188,991
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 IMP (MGI:5629993|PMID:25741725) MGI PMID:25741725 MGI:5629993 NCBI chr 2:44,983,512...45,117,442
Ensembl chr 2:44,983,632...45,117,395
JBrowse link
spinal cord ventral commissure morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adarb1 adenosine deaminase, RNA-specific, B1 IMP (MGI:4831065|PMID:20826656) MGI PMID:20826656 MGI:4831065 NCBI chr10:77,290,727...77,418,292
Ensembl chr10:77,290,726...77,418,270
JBrowse link
G Dcc deleted in colorectal carcinoma IMP (MGI:87114|PMID:9126737) MGI PMID:9126737 MGI:87114 NCBI chr18:71,253,613...72,351,228
Ensembl chr18:71,253,634...72,351,069
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 IMP (MGI:1340208|PMID:10409510) MGI PMID:10409510 MGI:1340208 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    developmental process 7030
      anatomical structure development 6504
        cell development 2487
          neuron development 1316
            central nervous system neuron development 101
              central nervous system neuron axonogenesis 42
                central nervous system projection neuron axonogenesis 29
                  anterior commissure morphogenesis 6
                  corpus callosum morphogenesis 8
                  corticospinal tract morphogenesis + 9
                  cuneatus tract morphogenesis 0
                  gracilis tract morphogenesis 0
                  medulla reticulospinal tract morphogenesis 0
                  pons reticulospinal tract morphogenesis 0
                  posterior commissure morphogenesis 0
                  rubrospinal tract morphogenesis 0
                  spinal cord ventral commissure morphogenesis 3
                  spinothalamic tract morphogenesis 0
                  tectobulbar tract morphogenesis 0
                  tectospinal tract morphogenesis 0
                  trigeminothalamic tract morphogenesis 0
                  vestibulospinal tract morphogenesis 0
Path 2
Term Annotations click to browse term
  biological_process 23386
    developmental process 7030
      anatomical structure development 6504
        multicellular organism development 5968
          system development 5380
            nervous system development 2722
              neurogenesis 1939
                generation of neurons 1785
                  neuron differentiation 1618
                    neuron development 1316
                      neuron projection development 1160
                        neuron projection morphogenesis 716
                          axonogenesis 490
                            central nervous system neuron axonogenesis 42
                              central nervous system projection neuron axonogenesis 29
                                anterior commissure morphogenesis 6
                                corpus callosum morphogenesis 8
                                corticospinal tract morphogenesis + 9
                                cuneatus tract morphogenesis 0
                                gracilis tract morphogenesis 0
                                medulla reticulospinal tract morphogenesis 0
                                pons reticulospinal tract morphogenesis 0
                                posterior commissure morphogenesis 0
                                rubrospinal tract morphogenesis 0
                                spinal cord ventral commissure morphogenesis 3
                                spinothalamic tract morphogenesis 0
                                tectobulbar tract morphogenesis 0
                                tectospinal tract morphogenesis 0
                                trigeminothalamic tract morphogenesis 0
                                vestibulospinal tract morphogenesis 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.