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ONTOLOGY REPORT - ANNOTATIONS


Term:telencephalon regionalization
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Accession:GO:0021978 term browser browse the term
Definition:The regionalization process that creates areas within the forebrain that will direct the behavior of cell migration in differentiation as the telencephalon develops.


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telencephalon regionalization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 ISO
IEA
MGI:MGI:96785 (MGI:MGI:2154554|PMID:11719201)
GO_REF:0000107
RGD
Ensembl
PMID:11719201 GO_REF:0000107, MGI:MGI:2154554 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
MGI:MGI:96785 (MGI:MGI:2154554|PMID:11719201), (MGI:MGI:3640853|PMID:16855091)
Ensembl
RGD
PMID:11719201, PMID:16855091 GO_REF:0000107, MGI:MGI:2154554, MGI:MGI:3640853 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:MGI:2150162 (MGI:MGI:3838261|PMID:18701439) RGD PMID:18701439 MGI:MGI:3838261 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Lhx2 LIM homeobox 2 ISO
IEA
MGI:MGI:1890208|MGI:MGI:88177|MGI:MGI:88180 (MGI:MGI:2154554|PMID:11719201)
GO_REF:0000107
RGD
Ensembl
PMID:11719201 GO_REF:0000107, MGI:MGI:2154554 NCBI chr 3:22,628,674...22,658,447
Ensembl chr 3:22,640,545...22,658,446
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:MGI:2178753|MGI:MGI:3665330 (MGI:MGI:5689191|PMID:26166575) RGD PMID:26166575 MGI:MGI:5689191 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Pax6 paired box 6 ISO MGI:MGI:1856155 (MGI:MGI:3838261|PMID:18701439) RGD PMID:18701439 MGI:MGI:3838261 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Shh sonic hedgehog signaling molecule IMP
IEA
ISO
GO_REF:0000107
MGI:MGI:1857796 (MGI:MGI:1926244|PMID:11060228)
Ensembl
RGD
PMID:11060228, PMID:9811591 GO_REF:0000107, MGI:MGI:1926244, RGD:2306311 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Six3 SIX homeobox 3 ISO (MGI:MGI:3813369|PMID:18694563) RGD PMID:18694563 MGI:MGI:3813369 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925
JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 ISO
IEA
(MGI:MGI:5566553|PMID:24531968)
GO_REF:0000107
RGD
Ensembl
PMID:24531968 GO_REF:0000107, MGI:MGI:5566553 NCBI chr19:10,423,534...10,460,674
Ensembl chr19:10,423,501...10,460,674
JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 ISO MGI:MGI:3707409 (MGI:MGI:5486528|PMID:23431145) RGD PMID:23431145 MGI:MGI:5486528 NCBI chr 2:102,685,513...102,688,624
Ensembl chr 2:102,685,513...102,688,624
JBrowse link
G Dmrta2 DMRT-like family A2 ISO MGI:MGI:5527461 (MGI:MGI:5524255|PMID:23056351), (MGI:MGI:5605467|PMID:22923088) RGD PMID:22923088, PMID:23056351 MGI:MGI:5524255, MGI:MGI:5605467 NCBI chr 5:129,754,295...129,760,045
Ensembl chr 5:129,756,149...129,758,986
JBrowse link
G Emx1 empty spiracles homeobox 1 ISO MGI:MGI:95388 (MGI:MGI:3043493|PMID:15147765) RGD PMID:15147765 MGI:MGI:3043493 NCBI chr 4:116,967,646...116,984,136
Ensembl chr 4:116,968,000...116,985,551
JBrowse link
G Emx2 empty spiracles homeobox 2 ISO MGI:MGI:2148858|MGI:MGI:95387 (MGI:MGI:3043493|PMID:15147765), (MGI:MGI:3606726|PMID:12764040) RGD PMID:12764040, PMID:15147765 MGI:MGI:3043493, MGI:MGI:3606726 NCBI chr 1:280,633,938...280,640,946
Ensembl chr 1:280,633,938...280,640,946
JBrowse link
G Eomes eomesodermin ISO
IEA
MGI:MGI:2176173|MGI:MGI:3802572 (MGI:MGI:5486528|PMID:23431145)
GO_REF:0000107
RGD
Ensembl
PMID:23431145 GO_REF:0000107, MGI:MGI:5486528 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493
JBrowse link
G Nr2f1 nuclear receptor subfamily 2, group F, member 1 ISO MGI:MGI:3521756 (MGI:MGI:3763674|PMID:17828260) RGD PMID:17828260 MGI:MGI:3763674 NCBI chr 2:5,569,954...5,579,894
Ensembl chr 2:5,569,935...5,579,894
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:MGI:1856155 (MGI:MGI:3606726|PMID:12764040), (MGI:MGI:5486528|PMID:23431145)
Ensembl
RGD
PMID:12764040, PMID:23431145 GO_REF:0000107, MGI:MGI:3606726, MGI:MGI:5486528 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Tra2b transformer 2 beta homolog ISO MGI:MGI:2176173|MGI:MGI:4450919 (MGI:MGI:5584349|PMID:24586484) RGD PMID:24586484 MGI:MGI:5584349 NCBI chr11:82,373,828...82,392,208
Ensembl chr11:82,373,870...82,392,083
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    multicellular organismal process 9055
      pattern specification process 496
        regionalization 392
          telencephalon regionalization 16
            cerebral cortex regionalization 9
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            nervous system development 2716
              central nervous system development 1257
                brain development 963
                  forebrain development 507
                    telencephalon development 338
                      telencephalon regionalization 16
                        cerebral cortex regionalization 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.